EWM30496.1, cds141 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|585113160|gb|EWM30496.1| (Protein of unknown function DUF4336 [Nannochloropsis gaditana]) HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0 Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0
Query: 1 MAAIIGGSWRLELHQRSRLLSFFLFVSLFLPVTVEAFTARIHGCPTMSSLNRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKNPFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
MAAIIGGSWRLELHQRSRLLSFFLFVSLFLPVTVEAFTARIHGCPTMSSLNRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKNPFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA
Sbjct: 1 MAAIIGGSWRLELHQRSRLLSFFLFVSLFLPVTVEAFTARIHGCPTMSSLNRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKNPFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|585108161|gb|EWM26165.1| (Protein of unknown function DUF4336 [Nannochloropsis gaditana]) HSP 1 Score: 101.293 bits (251), Expect = 1.672e-20 Identity = 59/180 (32.78%), Postives = 98/180 (54.44%), Query Frame = 0
Query: 132 RDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKD----LDVAVYET-PLLREMVLTHKPSKTLFVADS 306
R +++ P PP +PT+L+ SD + +W FEQPF+ ++K RMSV + + +YSP+AATPEC DM++++V + ++ S+ +H L WR P A+++++ PR + + LP P ++ ++ A+ + P RE+VL HKPSKTL AD+
Sbjct: 65 RQKLFLP--FPPSVRPTSLVFSDAQHKVWTFEQPFI-TTTNIKTRMSVFK-CETSIVMYSPIAATPECCDMVRNIVGG-----MPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADA 235
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|504212925|ref|WP_014400027.1| (hypothetical protein [Corallococcus coralloides] >gi|380731419|gb|AFE07421.1| hypothetical protein COCOR_07244 [Corallococcus coralloides DSM 2259]) HSP 1 Score: 97.0561 bits (240), Expect = 9.845e-20 Identity = 75/234 (32.05%), Postives = 107/234 (45.73%), Query Frame = 0
Query: 161 VFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMV-PSSFPEHHESLVTWREVFPEARVV------SVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRL-YERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHL 386
VF+ PF L V V RM+VLRL DGG ++SP+A TPE ++ +L F+V P+ F HH L W FP+ARVV + P + + E D P P+ ++ V P L E + H+PS+T V D F+ L R L G+ RF P F RL E R +R W +++V CH ++E G G++A + + L
Sbjct: 18 VFDAPFSLFGVPVGGRMTVLRLPDGGLWVHSPVAFTPER--------RAAVAALGPVRFLVAPNLF--HHLHLPDWAAAFPDARVVAPKGLRAKQPALRIDLEL------EDLPDPAWAPVLDQMN--VRGMPQLNEFLFFHRPSRTAIVTDLAFHYAHAEGLKL-RAYLWLDGVLGRFAAPRFLRLFTKDPEAVRASLQRAMKWDVERVVVCHGQVLERG-GQKALHDAFSRL 231
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|441491838|gb|AGC48533.1| (hypothetical protein MYSTI_07261 [Myxococcus stipitatus DSM 14675]) HSP 1 Score: 93.9745 bits (232), Expect = 1.181e-18 Identity = 70/231 (30.30%), Postives = 115/231 (49.78%), Query Frame = 0
Query: 165 PFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVS------VHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNS-LTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRL-YERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
PF +G D+ RM+++RL DGG ++SP+A TPE L++ V +L F+V + HH + W +PEA+V++ P + + +E L GP+ + Q VAV P+L E V H+PSKT+ + D F I+ SNS LTR +L G + R ++ + + R ++V W +++ CH ++E+G +A E ++ LA
Sbjct: 21 PFRMGAFDLGGRMTLIRLPDGGLWVHSPVALTPE----LRAAVD----ALGPVRFLVAPNL-MHHLKVGDWAAAYPEAKVLAPAGLRRKRPDLRIDAE-LESGPAVEGIEQ----------VAVRGMPMLDEFVFFHRPSKTVLLTDMSFNIHR--SNSWLTRMYLKLNGAWQRLSPTVITKMVIKDRPAVRASLDQVLAWDIQRVLVCHGDVMEQG-APDALREAFQRLA 228
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|768732026|ref|WP_044900896.1| (DUF4336 domain-containing protein [Myxococcus stipitatus]) HSP 1 Score: 93.5893 bits (231), Expect = 1.390e-18 Identity = 70/231 (30.30%), Postives = 115/231 (49.78%), Query Frame = 0
Query: 165 PFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVS------VHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNS-LTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRL-YERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
PF +G D+ RM+++RL DGG ++SP+A TPE L++ V +L F+V + HH + W +PEA+V++ P + + +E L GP+ + Q VAV P+L E V H+PSKT+ + D F I+ SNS LTR +L G + R ++ + + R ++V W +++ CH ++E+G +A E ++ LA
Sbjct: 15 PFRMGAFDLGGRMTLIRLPDGGLWVHSPVALTPE----LRAAVD----ALGPVRFLVAPNL-MHHLKVGDWAAAYPEAKVLAPAGLRRKRPDLRIDAE-LESGPAVEGIEQ----------VAVRGMPMLDEFVFFHRPSKTVLLTDMSFNIHR--SNSWLTRMYLKLNGAWQRLSPTVITKMVIKDRPAVRASLDQVLAWDIQRVLVCHGDVMEQG-APDALREAFQRLA 222
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|836728593|ref|WP_047860656.1| (DUF4336 domain-containing protein [Archangium gephyra] >gi|827427806|gb|AKJ07702.1| Methanol oxidation genes, glmU-like protein [Archangium gephyra]) HSP 1 Score: 93.5893 bits (231), Expect = 1.601e-18 Identity = 75/236 (31.78%), Postives = 114/236 (48.31%), Query Frame = 0
Query: 159 LWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMV-PSSFPEHHESLVTWREVFPEARVVS--------VHPRINV-ISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLY-ERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
L+V + PF +G + + RM+V+RL DGG L+SP+ E KS +L F+V P++ HH SL W +P A+V++ RI+V +S+ + G S L + P L E H+PS+TL + D F I+E S LTR +L G+Y + F + + K R + ERV W F+++V CH ++E+G GKEA E +
Sbjct: 9 LFVLDVPFRIGGMALGGRMTVIRLPDGGLWLHSPVKLDAEA--------KSAVDALGPVRFLVAPNTM--HHLSLGDWAAAYPTAKVLAPAGLRAKRPELRIDVELSDVMDVGQSPSIELLL-----------AHGIPKLEEFAFFHRPSRTLLLTDLAFNIHETPS-WLTRTYLKLSGVYGKLGATWFLKSMVKDKAALRAWRERVLGWDFERVVPCHGQVLEQG-GKEAMREAF 221
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|505134776|ref|WP_015321878.1| (DUF4336 domain-containing protein [Natronococcus occultus] >gi|433674246|gb|AGB38438.1| hypothetical protein Natoc_2676 [Natronococcus occultus SP4]) HSP 1 Score: 90.1225 bits (222), Expect = 2.646e-17 Identity = 68/235 (28.94%), Postives = 113/235 (48.09%), Query Frame = 0
Query: 151 LISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLD-VAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGM-NKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
++++R LW E+P +++ M+V+ LS GG + SP T E +++ L F+ P+S H + +RE +P+A +++ + +G D P D+D VA+ L E+ H+PS+T+ + D GF+I+E S TR + +L +Y R P FRL + N+ +R V W FD+++ H A+VE G GK A EG+
Sbjct: 1 MLTERDDRLWTDEEPLAFLGMELGRIMTVIELSTGGLFVQSPAELTAE--------LRAALDELGDVRFVAPASKLHGHLYMEQYREAYPDAELLAAPGLAARRPDLRFDGTLGDVPDP---RWSADIDQVAITGHRWLTELAFYHRPSETVILGDVGFHIDER-SPLQTRLVARLLCVYGRIGPPIEFRLTIANEATFRRSIRDVLAWEFDRVIPGHGAIVESG-GKRAVAEGF 222
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|495439258|ref|WP_008163953.1| (DUF4336 domain-containing protein [Natronorubrum sulfidifaciens] >gi|445589275|gb|ELY43511.1| hypothetical protein C495_14036 [Natronorubrum sulfidifaciens JCM 14089]) HSP 1 Score: 89.7373 bits (221), Expect = 3.709e-17 Identity = 68/235 (28.94%), Postives = 113/235 (48.09%), Query Frame = 0
Query: 151 LISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLD-VAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGM-NKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
++ R +W +E+P +++ M+V+RLS GG + SP TPE +++ L F+ P+S H + +R +P+A +++ + + D P P D+D VA+ L E+ H+PS+T+ + D GF+I E S TR + + +Y+R P FRL + N+ +R + V W FD++V H ++E G GK A LEGY
Sbjct: 1 MLEQRDDRVWTYEEPLRFLGLEIGRIMTVIRLSSGGLFVQSPAELTPE--------LRAALDDLGDVRFVAPASKLHGHLYMEQYRATYPDAELLAAPGLPARRPDLGFDQLLGDTPDPRWAP---DIDQVAIVGHRWLTELAYFHRPSRTVILGDVGFHIGEG-SPLTTRLVARALRVYERVGPPLEFRLTIANEASFRRSIQDVLAWEFDRVVPGHGEIIETG-GKRAVLEGY 222
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|1121247620|ref|WP_073565367.1| (DUF4336 domain-containing protein [Archangium sp. Cb G35] >gi|1113025531|gb|OJT19634.1| hypothetical protein BO221_35305 [Archangium sp. Cb G35]) HSP 1 Score: 89.3521 bits (220), Expect = 5.406e-17 Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 0
Query: 159 LWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMV-PSSFPEHHESLVTWREVFPEARVVSVHP--------RINV-ISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLY-ERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
L+V + PF +G + + RM+V+RL DGG L+SP+ E KS +L F+V P++ HH SL W +PEA+V++ RI+V +S+ + G S L + P L E H+PS+TL + D F I+E S LTR +L G Y + + + K R + ERV W F+++V CH ++E+G GKEA + +
Sbjct: 9 LFVLDVPFSVGAMALGGRMTVIRLPDGGLWLHSPVKLDAE--------KKSAVDALGPVRFLVAPNTM--HHLSLGDWAAAYPEAKVLAPAGLRAKRPDLRIDVELSDVMDVGQSPTIELLL-----------AHGIPKLEEFAFFHRPSRTLLLTDLAFNIHETPS-WLTRTYLKLCGAYGKLGATWLLKSMVKDKAALRAWRERVLGWDFERVVPCHGQVLEKG-GKEAMRDAF 221
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|492957482|ref|WP_006065567.1| (DUF4336 domain-containing protein [Natronorubrum bangense] >gi|445595637|gb|ELY49741.1| hypothetical protein C494_07000 [Natronorubrum bangense JCM 10635]) HSP 1 Score: 88.5817 bits (218), Expect = 9.715e-17 Identity = 68/235 (28.94%), Postives = 111/235 (47.23%), Query Frame = 0
Query: 151 LISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLD-VAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGM-NKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
++ R W +E+P +++ M+V+RLS GG + SP TPE ++S L F+ P+S H + +R V+P A +++ + + D P P D+D VA+ L E+ H+PS+T+ + D GF+I E S TR + + +Y + P FRL + N+ +R + V W FD++V H +++ G GK A LEGY
Sbjct: 1 MLKQRGDRCWTYEEPLRFLGLEIGRIMTVIRLSSGGLFVQSPAELTPE--------LQSALDELGDVRFVAPASKLHGHLYMEQYRAVYPNAELLAAPGLPARRPDLQFDQLLGDTPDPRWAP---DIDQVAIVGHRWLTELAYVHRPSRTVILGDVGFHIGEG-SPLTTRLVARALRVYKQIGPPLEFRLTIANEASFRRSIQDVLAWEFDRVVPGHGEIIDTG-GKRAVLEGY 222 The following BLAST results are available for this feature:
BLAST of EWM30496.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|