EWM30496.1, cds141 (CDS) Nannochloropsis gaditana

Overview
NameEWM30496.1
Unique Namecds141
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:367114..368277 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30496.1
ProductProtein of unknown function DUF4336
Orig transcript idgnl|cribi|Naga_100013g81.9784.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:367114..368277 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025638DUF4336
Homology
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|585113160|gb|EWM30496.1| (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0
Query:    1 MAAIIGGSWRLELHQRSRLLSFFLFVSLFLPVTVEAFTARIHGCPTMSSLNRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKNPFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
            MAAIIGGSWRLELHQRSRLLSFFLFVSLFLPVTVEAFTARIHGCPTMSSLNRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKNPFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA
Sbjct:    1 MAAIIGGSWRLELHQRSRLLSFFLFVSLFLPVTVEAFTARIHGCPTMSSLNRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKNPFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|585108161|gb|EWM26165.1| (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 101.293 bits (251), Expect = 1.672e-20
Identity = 59/180 (32.78%), Postives = 98/180 (54.44%), Query Frame = 0
Query:  132 RDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKD----LDVAVYET-PLLREMVLTHKPSKTLFVADS 306
            R +++ P   PP  +PT+L+ SD +  +W FEQPF+    ++K RMSV +  +    +YSP+AATPEC DM++++V          + ++ S+  +H   L  WR   P A+++++ PR   +          +    LP P ++     ++ A+ +  P  RE+VL HKPSKTL  AD+
Sbjct:   65 RQKLFLP--FPPSVRPTSLVFSDAQHKVWTFEQPFI-TTTNIKTRMSVFK-CETSIVMYSPIAATPECCDMVRNIVGG-----MPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKDSSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADA 235          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|504212925|ref|WP_014400027.1| (hypothetical protein [Corallococcus coralloides] >gi|380731419|gb|AFE07421.1| hypothetical protein COCOR_07244 [Corallococcus coralloides DSM 2259])

HSP 1 Score: 97.0561 bits (240), Expect = 9.845e-20
Identity = 75/234 (32.05%), Postives = 107/234 (45.73%), Query Frame = 0
Query:  161 VFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMV-PSSFPEHHESLVTWREVFPEARVV------SVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRL-YERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHL 386
            VF+ PF L  V V  RM+VLRL DGG  ++SP+A TPE         ++   +L    F+V P+ F  HH  L  W   FP+ARVV      +  P + +  E        D P     P+   ++  V   P L E +  H+PS+T  V D  F+        L R    L G+  RF  P F RL     E  R   +R   W  +++V CH  ++E G G++A  + +  L
Sbjct:   18 VFDAPFSLFGVPVGGRMTVLRLPDGGLWVHSPVAFTPER--------RAAVAALGPVRFLVAPNLF--HHLHLPDWAAAFPDARVVAPKGLRAKQPALRIDLEL------EDLPDPAWAPVLDQMN--VRGMPQLNEFLFFHRPSRTAIVTDLAFHYAHAEGLKL-RAYLWLDGVLGRFAAPRFLRLFTKDPEAVRASLQRAMKWDVERVVVCHGQVLERG-GQKALHDAFSRL 231          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|441491838|gb|AGC48533.1| (hypothetical protein MYSTI_07261 [Myxococcus stipitatus DSM 14675])

HSP 1 Score: 93.9745 bits (232), Expect = 1.181e-18
Identity = 70/231 (30.30%), Postives = 115/231 (49.78%), Query Frame = 0
Query:  165 PFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVS------VHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNS-LTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRL-YERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
            PF +G  D+  RM+++RL DGG  ++SP+A TPE    L++ V     +L    F+V  +   HH  +  W   +PEA+V++        P + + +E L  GP+ +   Q          VAV   P+L E V  H+PSKT+ + D  F I+   SNS LTR   +L G + R       ++ +  +   R   ++V  W   +++ CH  ++E+G   +A  E ++ LA
Sbjct:   21 PFRMGAFDLGGRMTLIRLPDGGLWVHSPVALTPE----LRAAVD----ALGPVRFLVAPNL-MHHLKVGDWAAAYPEAKVLAPAGLRRKRPDLRIDAE-LESGPAVEGIEQ----------VAVRGMPMLDEFVFFHRPSKTVLLTDMSFNIHR--SNSWLTRMYLKLNGAWQRLSPTVITKMVIKDRPAVRASLDQVLAWDIQRVLVCHGDVMEQG-APDALREAFQRLA 228          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|768732026|ref|WP_044900896.1| (DUF4336 domain-containing protein [Myxococcus stipitatus])

HSP 1 Score: 93.5893 bits (231), Expect = 1.390e-18
Identity = 70/231 (30.30%), Postives = 115/231 (49.78%), Query Frame = 0
Query:  165 PFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVS------VHPRINVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNS-LTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRL-YERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
            PF +G  D+  RM+++RL DGG  ++SP+A TPE    L++ V     +L    F+V  +   HH  +  W   +PEA+V++        P + + +E L  GP+ +   Q          VAV   P+L E V  H+PSKT+ + D  F I+   SNS LTR   +L G + R       ++ +  +   R   ++V  W   +++ CH  ++E+G   +A  E ++ LA
Sbjct:   15 PFRMGAFDLGGRMTLIRLPDGGLWVHSPVALTPE----LRAAVD----ALGPVRFLVAPNL-MHHLKVGDWAAAYPEAKVLAPAGLRRKRPDLRIDAE-LESGPAVEGIEQ----------VAVRGMPMLDEFVFFHRPSKTVLLTDMSFNIHR--SNSWLTRMYLKLNGAWQRLSPTVITKMVIKDRPAVRASLDQVLAWDIQRVLVCHGDVMEQG-APDALREAFQRLA 222          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|836728593|ref|WP_047860656.1| (DUF4336 domain-containing protein [Archangium gephyra] >gi|827427806|gb|AKJ07702.1| Methanol oxidation genes, glmU-like protein [Archangium gephyra])

HSP 1 Score: 93.5893 bits (231), Expect = 1.601e-18
Identity = 75/236 (31.78%), Postives = 114/236 (48.31%), Query Frame = 0
Query:  159 LWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMV-PSSFPEHHESLVTWREVFPEARVVS--------VHPRINV-ISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLY-ERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
            L+V + PF +G + +  RM+V+RL DGG  L+SP+    E         KS   +L    F+V P++   HH SL  W   +P A+V++           RI+V +S+ +  G S      L            +  P L E    H+PS+TL + D  F I+E  S  LTR   +L G+Y +     F +  +  K   R + ERV  W F+++V CH  ++E+G GKEA  E +
Sbjct:    9 LFVLDVPFRIGGMALGGRMTVIRLPDGGLWLHSPVKLDAEA--------KSAVDALGPVRFLVAPNTM--HHLSLGDWAAAYPTAKVLAPAGLRAKRPELRIDVELSDVMDVGQSPSIELLL-----------AHGIPKLEEFAFFHRPSRTLLLTDLAFNIHETPS-WLTRTYLKLSGVYGKLGATWFLKSMVKDKAALRAWRERVLGWDFERVVPCHGQVLEQG-GKEAMREAF 221          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|505134776|ref|WP_015321878.1| (DUF4336 domain-containing protein [Natronococcus occultus] >gi|433674246|gb|AGB38438.1| hypothetical protein Natoc_2676 [Natronococcus occultus SP4])

HSP 1 Score: 90.1225 bits (222), Expect = 2.646e-17
Identity = 68/235 (28.94%), Postives = 113/235 (48.09%), Query Frame = 0
Query:  151 LISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLD-VAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGM-NKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
            ++++R   LW  E+P     +++   M+V+ LS GG  + SP   T E        +++    L    F+ P+S    H  +  +RE +P+A +++         +   +G   D P         D+D VA+     L E+   H+PS+T+ + D GF+I+E  S   TR + +L  +Y R   P  FRL + N+   +R    V  W FD+++  H A+VE G GK A  EG+
Sbjct:    1 MLTERDDRLWTDEEPLAFLGMELGRIMTVIELSTGGLFVQSPAELTAE--------LRAALDELGDVRFVAPASKLHGHLYMEQYREAYPDAELLAAPGLAARRPDLRFDGTLGDVPDP---RWSADIDQVAITGHRWLTELAFYHRPSETVILGDVGFHIDER-SPLQTRLVARLLCVYGRIGPPIEFRLTIANEATFRRSIRDVLAWEFDRVIPGHGAIVESG-GKRAVAEGF 222          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|495439258|ref|WP_008163953.1| (DUF4336 domain-containing protein [Natronorubrum sulfidifaciens] >gi|445589275|gb|ELY43511.1| hypothetical protein C495_14036 [Natronorubrum sulfidifaciens JCM 14089])

HSP 1 Score: 89.7373 bits (221), Expect = 3.709e-17
Identity = 68/235 (28.94%), Postives = 113/235 (48.09%), Query Frame = 0
Query:  151 LISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLD-VAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGM-NKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
            ++  R   +W +E+P     +++   M+V+RLS GG  + SP   TPE        +++    L    F+ P+S    H  +  +R  +P+A +++         +   +    D P     P   D+D VA+     L E+   H+PS+T+ + D GF+I E  S   TR + +   +Y+R   P  FRL + N+   +R  + V  W FD++V  H  ++E G GK A LEGY
Sbjct:    1 MLEQRDDRVWTYEEPLRFLGLEIGRIMTVIRLSSGGLFVQSPAELTPE--------LRAALDDLGDVRFVAPASKLHGHLYMEQYRATYPDAELLAAPGLPARRPDLGFDQLLGDTPDPRWAP---DIDQVAIVGHRWLTELAYFHRPSRTVILGDVGFHIGEG-SPLTTRLVARALRVYERVGPPLEFRLTIANEASFRRSIQDVLAWEFDRVVPGHGEIIETG-GKRAVLEGY 222          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|1121247620|ref|WP_073565367.1| (DUF4336 domain-containing protein [Archangium sp. Cb G35] >gi|1113025531|gb|OJT19634.1| hypothetical protein BO221_35305 [Archangium sp. Cb G35])

HSP 1 Score: 89.3521 bits (220), Expect = 5.406e-17
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 0
Query:  159 LWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMV-PSSFPEHHESLVTWREVFPEARVVSVHP--------RINV-ISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLY-ERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
            L+V + PF +G + +  RM+V+RL DGG  L+SP+    E         KS   +L    F+V P++   HH SL  W   +PEA+V++           RI+V +S+ +  G S      L            +  P L E    H+PS+TL + D  F I+E  S  LTR   +L G Y +       +  +  K   R + ERV  W F+++V CH  ++E+G GKEA  + +
Sbjct:    9 LFVLDVPFSVGAMALGGRMTVIRLPDGGLWLHSPVKLDAE--------KKSAVDALGPVRFLVAPNTM--HHLSLGDWAAAYPEAKVLAPAGLRAKRPDLRIDVELSDVMDVGQSPTIELLL-----------AHGIPKLEEFAFFHRPSRTLLLTDLAFNIHETPS-WLTRTYLKLCGAYGKLGATWLLKSMVKDKAALRAWRERVLGWDFERVVPCHGQVLEKG-GKEAMRDAF 221          
BLAST of EWM30496.1 vs. NCBI_GenBank
Match: gi|492957482|ref|WP_006065567.1| (DUF4336 domain-containing protein [Natronorubrum bangense] >gi|445595637|gb|ELY49741.1| hypothetical protein C494_07000 [Natronorubrum bangense JCM 10635])

HSP 1 Score: 88.5817 bits (218), Expect = 9.715e-17
Identity = 68/235 (28.94%), Postives = 111/235 (47.23%), Query Frame = 0
Query:  151 LISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPSTDAPSQLPFPLRKDLD-VAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGM-NKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGY 383
            ++  R    W +E+P     +++   M+V+RLS GG  + SP   TPE        ++S    L    F+ P+S    H  +  +R V+P A +++         +   +    D P     P   D+D VA+     L E+   H+PS+T+ + D GF+I E  S   TR + +   +Y +   P  FRL + N+   +R  + V  W FD++V  H  +++ G GK A LEGY
Sbjct:    1 MLKQRGDRCWTYEEPLRFLGLEIGRIMTVIRLSSGGLFVQSPAELTPE--------LQSALDELGDVRFVAPASKLHGHLYMEQYRAVYPNAELLAAPGLPARRPDLQFDQLLGDTPDPRWAP---DIDQVAIVGHRWLTELAYVHRPSRTVILGDVGFHIGEG-SPLTTRLVARALRVYKQIGPPLEFRLTIANEASFRRSIQDVLAWEFDRVVPGHGEIIDTG-GKRAVLEGY 222          
The following BLAST results are available for this feature:
BLAST of EWM30496.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113160|gb|EWM30496.1|0.000e+0100.00Protein of unknown function DUF4336 [Nannochlorops... [more]
gi|585108161|gb|EWM26165.1|1.672e-2032.78Protein of unknown function DUF4336 [Nannochlorops... [more]
gi|504212925|ref|WP_014400027.1|9.845e-2032.05hypothetical protein [Corallococcus coralloides] >... [more]
gi|441491838|gb|AGC48533.1|1.181e-1830.30hypothetical protein MYSTI_07261 [Myxococcus stipi... [more]
gi|768732026|ref|WP_044900896.1|1.390e-1830.30DUF4336 domain-containing protein [Myxococcus stip... [more]
gi|836728593|ref|WP_047860656.1|1.601e-1831.78DUF4336 domain-containing protein [Archangium geph... [more]
gi|505134776|ref|WP_015321878.1|2.646e-1728.94DUF4336 domain-containing protein [Natronococcus o... [more]
gi|495439258|ref|WP_008163953.1|3.709e-1728.94DUF4336 domain-containing protein [Natronorubrum s... [more]
gi|1121247620|ref|WP_073565367.1|5.406e-1731.36DUF4336 domain-containing protein [Archangium sp. ... [more]
gi|492957482|ref|WP_006065567.1|9.715e-1728.94DUF4336 domain-containing protein [Natronorubrum b... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna141rna141Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications