rna1404, rna1404 (mRNA) Nannochloropsis gaditana

Overview
Namerna1404
Unique Namerna1404
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1326
Alignment locationCM002457.1:554887..556363 -

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Properties
Property NameValue
Productph domain-containing
Orig transcript idgnl|cribi|Naga_100029g21.9516.mrna
Orig protein idgnl|cribi|Naga_100029g21.9516
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:554887..556363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g21gene1355Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1404rna1404-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29259.1cds1402Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1404 ID=rna1404|Name=rna1404|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp
ATGTGGGAGGGGCAGACGCTAGAGCCTCCGTGGGATGGACGGCTCCCTAT
CATCTCGCACGAATATCGTGCCCGAGGCCTTTTTTTCTCCTTCCTCTCAC
GCCCGCACATCACTTTGAATACGACCGACGAATACACAGTCGCGGCGGGA
AGTCCACAGCTTTTTCTTGAGGCTTACACCGGGTTTTCTCGCGCAGTTTT
CTTTTTCCCCCCAAGCTTTGCGAGGACGATGACCATGACGGGACTGCACC
GGCCGCTCCTGCTCCTGATAGTATTAGCGCTTTACGCCCTGGAAAACCAG
GTGCGTGCCCTCCCGGCTGCGCCTGCCAAGAGCCTCAAGGTCATACCTGC
GCCCTCTGCACGCAAGGCAGACGTGACCCACAAACTTAACACCATCGACA
TGATGATCGCGGGCGGTGTTGCCACGGCTATCGGAGACCTGGCTATGCAT
CCCATTGACACCATTAAGACCGTGCAGCAAGCAGCTCCGGCGGGTCTAAG
CATCTTCAAGGCATGCTCCAAAATTTTAAAGGAGATGGGGCCTATAGGTT
TTTATGCAGGCGTGGTTCCCTATGCCACCATGGACGGGCTCTCGGGTGCG
ATCAAATTCGCCACCTACGAGTGGGGAAAGAAGCTTGTCGCACCCGTTTT
GCCCTCCGCTTTGCATGCATACTCCCATTTCGTCTGTGCCGCCGGAGCAT
TTCTATCCTGCTCCGTGGTGATGGTGCCTGGAGAGCTCGTCAAGCAACGT
TTGCAGGCGGGCGTGGTCCCAAACATGGTGGACGGCATCAAGCAGATGTG
GAAGACCGAGGGGCTGCCCGGATTTTTCGTGGGCTACAAGGCTACCCTGA
TTCGCGATGTGCCCTACACCATGCTCGAGCTGGGCTTGTACGAAAACTTT
AAGACCCTGATCAAAAAGTATCGTAAGCGTGAGGAGCTTACGACTTACGA
AGAGCTGGGGGCGGCAGCAGTGACAGGAGGCTTGGTGGGCTTGTTGACCA
ATCCTCTCGATCTGGTCAAGACGCGACTGATGACTGGGACCCAATACACG
GGATTCTTCGACGTGGTCCAAAAGATGTATAAGACGGAGGGAGGCATCTC
CAGCTTCATGTCAGGGTCCAGCGCGCGTGTGCTGTGGCTGTTGCCCTTCA
CAGTCATTCATCTCGGCGCCTATGAAAGTGCTGTCCAAGCGCATCTTAGC
CGACCTCAAGCCCAATATTGCCACCAAATAAGAATGAAGGTCGTCCGCTG
TAAAGGGCTTGCAGGTCACTACAGCGTTTTGGCGATGGGGATCGATCACA
TGTTAAGAGATATCCGGCGACGATGA
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protein sequence of rna1404

>rna1404-protein ID=rna1404-protein|Name=rna1404|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MTGRRIKTDAFGKEYVAFQIGVKNGNLAWQLKFTSYMGVRKLQGQRTAAM
EKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNT
WHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRK
FSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDG
YCLSDVMLVDTATLELGRATFEAAEIALSSSK
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mRNA from alignment at CM002457.1:554887..556363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1404 ID=rna1404|Name=rna1404|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp|location=Sequence derived from alignment at CM002457.1:554887..556363- (Nannochloropsis gaditana)
ATGACGGGAAGAAGGTGAGATCAAATAGGTTAACGATATCTTACCCCAGG
TATCATTTTTGCTGAAGGAAAAATCAGCAAGCTTTGATATCATCCAATCT
CCCCTCTTACTCCTAAAATAGGATTAAAACTGACGCTTTTGGGAAAGAGT
ATGTCGCATTCCAGATAGGTGTTAAAAATGGAAATTTAGCTTGGCAACTC
AGTAAGAGATTTTCTGAATTTGCGAGCATGCATGGAAAATTTTGCAGGCA
CCTGGAGCAACGTTTGCAGAAATGGCCGGAGGAATATAGGCATCTTCACG
CTTACTTACCGGCACTTCCACCTAGGCTTTGGCATAAATCGGCAGAGAGT
CTTGATGGCAGGCAAAAAGATCTGGAGGTTTATCTTCAACGTCTTCTTGA
CGTCCCTATAGCTACAGAAGATCCGCACGTGTTGGCCTTTTTGGGGATAG
TCTCATCCCTGAGCGCGGAGCTTGCATCCCCAAGCGCAGAGTTCAATGCT
CACTCCAATGCCATGAAGCAAAGAAAGATTATACATGTGTCTTCTCTGAA
TGGCGATCTTGAAATGGGTGACATTATACTCTTTCAGTGCGCGCACGCCC
TCGCAGGCCTTCAGCGAGGTGTGACACGTGCGGAATGGGATCACGGTATG
TACCTTCCGCTTTAAGCGCCCAGCCCGTGAATGTGAAAACCTACCTTGTT
GCTTGCTGTGAAGGCATAATAATTGAACATGATTCCTCACCTCCAAATCA
TCCCAATATAGTGGCTTTAGTCGTTAAACGCCAAGACGGTCGCGGGTGCG
ATCTTCTTGAAAGTACTTGTGACGGCGTTACCTGCGTCCCTCTTTCCGCT
CGGATGGCTGCCTATGCTACAGAGTTTACGTCCTACATGGGGGTCCGCAA
ATTACAAGGGCAAAGGACAGCTGCAATGGAAAAAAAGTTGCAAGGATTTG
TGGAACGGATCAATGGTCGGCCATATGGATTTCCGTTGACTACATTGTTC
GCGAAGAAGTACATCACCAGCGACACAGACGTTGCTCCTGTTACTGCTTA
CGGCTTACCTTCTCCGAAGTCAAATACTTGGCATTCGAATCTCCGCTCTG
TCCCTTTCTACCCTGACTTCTTGAACAATCGCCGGAGGCATTCAAAAGTC
ACGGCCTTGTCGGCTTCAAATTCCTCCCAAGCAGATTCAAGTAGCGGAAT
GGAGGTAGTTGAGAAGGCGAGAAGGAAATTTTCCCATGAGAGAGGTTTCT
TTTGTAGCAATCTAGTGGCTGCTGCATTGCGAGAGATGTGCGTGCTAAAA
GCAGACATTAATGATGACTACTTTTGGCCCGGTGCCTTCACTGAAGGTGG
TGAGATAGACGATGCCTTTCGGGATGGGTACTGTCTCAGTGACGTGATGT
TGGTGGACACCGCCACGCTTGAGCTGGGGCGAGCCACATTTGAAGCGGCA
GAGATAGCGCTTTCGTCCTCAAAGTGA
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Coding sequence (CDS) from alignment at CM002457.1:554887..556363-

>rna1404 ID=rna1404|Name=rna1404|organism=Nannochloropsis gaditana|type=CDS|length=2097bp|location=Sequence derived from alignment at CM002457.1:554887..556363- (Nannochloropsis gaditana)
AGTTTACGTCCTACATGGGGGTCCGCAAATTACAAGGGCAAAGGACAGCT
GCAATGGAAAAAAAGTTGCAAGGATTTGTGGAACGGATCAATGGTCGGCC
ATATGGATTTCCGTTGACTACATTGTTCGCGAAGAAGTACATCACCAGCG
ACACAGACGTTGCTCCTGTTACTGCTTACGGCTTACCTTCTCCGAAGTCA
AATACTTGGCATTCGAATCTCCGCTCTGTCCCTTTCTACCCTGACTTCTT
GAACAATCGCCGGAGGCATTCAAAAGTCACGGCCTTGTCGGCTTCAAATT
CCTCCCAAGCAGATTCAAGTAGCGGAATGGAGGTAGTTGAGAAGGCGAGA
AGGAAATTTTCCCATGAGAGAGGTTTCTTTTGTAGCAATCTAGTGGCTGC
TGCATTGCGAGAGATGTGCGTGCTAAAAGCAGACATTAATGATGACTACT
TTTGGCCCGGTGCCTTCACTGAAGGTGGTGAGATAGACGATGCCTTTCGG
GATGGGTACTGTCTCAGTGACGTGATGTTGGTGGACACCGCCACGCTTGA
GCTGGGGCGAGCCACATTTGAAGCGGCAGAGATAGCGCTTTCGTCCTCAA
AGTGAGATTAAAACTGACGCTTTTGGGAAAGAGTATGTCGCATTCCAGAT
AGGTGTTAAAAATGGAAATTTAGCTTGGCAACTCAATGACGGGAAGAAGA
GTTTACGTCCTACATGGGGGTCCGCAAATTACAAGGGCAAAGGACAGCTG
CAATGGAAAAAAAGTTGCAAGGATTTGTGGAACGGATCAATGGTCGGCCA
TATGGATTTCCGTTGACTACATTGTTCGCGAAGAAGTACATCACCAGCGA
CACAGACGTTGCTCCTGTTACTGCTTACGGCTTACCTTCTCCGAAGTCAA
ATACTTGGCATTCGAATCTCCGCTCTGTCCCTTTCTACCCTGACTTCTTG
AACAATCGCCGGAGGCATTCAAAAGTCACGGCCTTGTCGGCTTCAAATTC
CTCCCAAGCAGATTCAAGTAGCGGAATGGAGGTAGTTGAGAAGGCGAGAA
GGAAATTTTCCCATGAGAGAGGTTTCTTTTGTAGCAATCTAGTGGCTGCT
GCATTGCGAGAGATGTGCGTGCTAAAAGCAGACATTAATGATGACTACTT
TTGGCCCGGTGCCTTCACTGAAGGTGGTGAGATAGACGATGCCTTTCGGG
ATGGGTACTGTCTCAGTGACGTGATGTTGGTGGACACCGCCACGCTTGAG
CTGGGGCGAGCCACATTTGAAGCGGCAGAGATAGCGCTTTCGTCCTCAAA
GTGAGATTAAAACTGACGCTTTTGGGAAAGAGTATGTCGCATTCCAGATA
GGTGTTAAAAATGGAAATTTAGCTTGGCAACTCAATGACGGGAAGAAGAG
TTTACGTCCTACATGGGGGTCCGCAAATTACAAGGGCAAAGGACAGCTGC
AATGGAAAAAAAGTTGCAAGGATTTGTGGAACGGATCAATGGTCGGCCAT
ATGGATTTCCGTTGACTACATTGTTCGCGAAGAAGTACATCACCAGCGAC
ACAGACGTTGCTCCTGTTACTGCTTACGGCTTACCTTCTCCGAAGTCAAA
TACTTGGCATTCGAATCTCCGCTCTGTCCCTTTCTACCCTGACTTCTTGA
ACAATCGCCGGAGGCATTCAAAAGTCACGGCCTTGTCGGCTTCAAATTCC
TCCCAAGCAGATTCAAGTAGCGGAATGGAGGTAGTTGAGAAGGCGAGAAG
GAAATTTTCCCATGAGAGAGGTTTCTTTTGTAGCAATCTAGTGGCTGCTG
CATTGCGAGAGATGTGCGTGCTAAAAGCAGACATTAATGATGACTACTTT
TGGCCCGGTGCCTTCACTGAAGGTGGTGAGATAGACGATGCCTTTCGGGA
TGGGTACTGTCTCAGTGACGTGATGTTGGTGGACACCGCCACGCTTGAGC
TGGGGCGAGCCACATTTGAAGCGGCAGAGATAGCGCTTTCGTCCTCAAAG
TGAGATTAAAACTGACGCTTTTGGGAAAGAGTATGTCGCATTCCAGATAG
GTGTTAAAAATGGAAATTTAGCTTGGCAACTCAATGACGGGAAGAAG
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Synonyms
Publications