EWM29259.1, cds1402 (CDS) Nannochloropsis gaditana

Overview
NameEWM29259.1
Unique Namecds1402
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:556350..556363 -
Alignment locationCM002457.1:556163..556242 -
Alignment locationCM002457.1:554887..555491 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29259.1
Productph domain-containing
Orig transcript idgnl|cribi|Naga_100029g21.9516.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:556350..556363 -
CM002457.1supercontigCM002457.1:556163..556242 -
CM002457.1supercontigCM002457.1:554887..555491 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Homology
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|585111782|gb|EWM29259.1| (ph domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 484.952 bits (1247), Expect = 1.648e-173
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MTGRRIKTDAFGKEYVAFQIGVKNGNLAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 232
            MTGRRIKTDAFGKEYVAFQIGVKNGNLAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK
Sbjct:    1 MTGRRIKTDAFGKEYVAFQIGVKNGNLAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 232          
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|553194970|ref|XP_005856064.1| (ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292994|gb|EKU20295.1| ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 417.542 bits (1072), Expect = 4.788e-144
Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0
Query:   28 AWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 232
            A+  +FTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKA RKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK
Sbjct:  209 AYATEFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKASRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 413          

HSP 2 Score: 65.855 bits (159), Expect = 6.598e-9
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    5 RIKTDAFGKEYVAFQIGVKNGNLAWQL--KFTSYMGVRKLQGQRTAAMEKKLQGFVE 59
            RIKTDAFGKEYVAFQIGVKNGNLAWQL  +F+ +     + G+    +E++LQ + E
Sbjct:    1 RIKTDAFGKEYVAFQIGVKNGNLAWQLSKRFSEFAS---MHGKFCRHLEQRLQKWPE 54          
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|325186918|emb|CCA21462.1| (ribonuclease H2 subunit A putative [Albugo laibachii Nc14])

HSP 1 Score: 62.003 bits (149), Expect = 1.250e-7
Identity = 31/98 (31.63%), Postives = 53/98 (54.08%), Query Frame = 0
Query:  124 VTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATF 221
            V+ L    +   + +  +   +K ++     R +FCS+LVA+AL+E+  L+   +  YFWPG+F E GEI+ +   G  L   + +D   +E+  ATF
Sbjct:  393 VSPLQNFTTQSVEIAKSVVASQKTKQSPHKRRKYFCSSLVASALKELGWLQTKRSCSYFWPGSFEEHGEIERSLHPGTTLGKEIDIDCRPVEVATATF 490          
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|635361451|emb|CCI49601.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 62.003 bits (149), Expect = 1.423e-7
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 0
Query:  123 KVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATF 221
            ++ +  + N +    S  M    + +   S  + +FCS+LVA+AL++M  L+   +  YFWPG+F E GEI+ +   G  L   + VD   +E+  A F
Sbjct:  657 RLPSFVSQNHTSTTQSVKMSKDVRTKETSSKRKNYFCSSLVASALKDMGWLRTQRSCSYFWPGSFEEDGEIEKSLHPGITLGKEIDVDCRLVEVATAIF 755          
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|1173945324|gb|OQR93964.1| (ribonuclease H2 subunit A [Achlya hypogyna])

HSP 1 Score: 61.2326 bits (147), Expect = 2.640e-7
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0
Query:  157 FFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRA 219
            +FCS LVAAAL  +  L+ D+   Y+WPG F EGGE++     G  +   + +D   LE+GRA
Sbjct:  539 YFCSELVAAALMHLGWLRKDLPPSYYWPGNFQEGGELEVHLEPGVTIGPELALDCKFLEVGRA 601          
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|953502461|emb|CEG36392.1| (ribonuclease h2 subunit [Plasmopara halstedii])

HSP 1 Score: 61.2326 bits (147), Expect = 2.827e-7
Identity = 51/191 (26.70%), Postives = 83/191 (43.46%), Query Frame = 0
Query:   27 LAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELG 217
            +A+  + ++ + VRK++ +R+  +   L  FV R+NG  Y       F  K   SD ++A  T                               HSK      S SS  +SS+    V  +      +R +FCS+LVAAA +E+  L+       FWPG+F +GGE++   R    L   +++D   +E+G
Sbjct:  758 MAYAREVSNVIVVRKIETERSIELMDTLTDFVRRVNGNRYSLAEILRFTGK---SDRNLARSTLVT----------------------------HSKYEVGDDSISSNINSSTPSSPVTSSSDSTKSQRKYFCSSLVAAAWKELGWLQTKRKSSSFWPGSFEDGGEVERLLRPELVLGPEIVIDCRIVEVG 917          
The following BLAST results are available for this feature:
BLAST of EWM29259.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585111782|gb|EWM29259.1|1.648e-173100.00ph domain-containing [Nannochloropsis gaditana][more]
gi|553194970|ref|XP_005856064.1|4.788e-14497.56ph domain-containing protein, partial [Nannochloro... [more]
gi|325186918|emb|CCA21462.1|1.250e-731.63ribonuclease H2 subunit A putative [Albugo laibach... [more]
gi|635361451|emb|CCI49601.1|1.423e-731.31unnamed protein product [Albugo candida][more]
gi|1173945324|gb|OQR93964.1|2.640e-742.86ribonuclease H2 subunit A [Achlya hypogyna][more]
gi|953502461|emb|CEG36392.1|2.827e-726.70ribonuclease h2 subunit [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1404rna1404Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications