EWM29259.1, cds1402 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|585111782|gb|EWM29259.1| (ph domain-containing [Nannochloropsis gaditana]) HSP 1 Score: 484.952 bits (1247), Expect = 1.648e-173 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query: 1 MTGRRIKTDAFGKEYVAFQIGVKNGNLAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 232
MTGRRIKTDAFGKEYVAFQIGVKNGNLAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK
Sbjct: 1 MTGRRIKTDAFGKEYVAFQIGVKNGNLAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 232
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|553194970|ref|XP_005856064.1| (ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292994|gb|EKU20295.1| ph domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 417.542 bits (1072), Expect = 4.788e-144 Identity = 200/205 (97.56%), Postives = 202/205 (98.54%), Query Frame = 0
Query: 28 AWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 232
A+ +FTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKA RKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK
Sbjct: 209 AYATEFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKASRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATFEAAEIALSSSK 413 HSP 2 Score: 65.855 bits (159), Expect = 6.598e-9 Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0
Query: 5 RIKTDAFGKEYVAFQIGVKNGNLAWQL--KFTSYMGVRKLQGQRTAAMEKKLQGFVE 59
RIKTDAFGKEYVAFQIGVKNGNLAWQL +F+ + + G+ +E++LQ + E
Sbjct: 1 RIKTDAFGKEYVAFQIGVKNGNLAWQLSKRFSEFAS---MHGKFCRHLEQRLQKWPE 54
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|325186918|emb|CCA21462.1| (ribonuclease H2 subunit A putative [Albugo laibachii Nc14]) HSP 1 Score: 62.003 bits (149), Expect = 1.250e-7 Identity = 31/98 (31.63%), Postives = 53/98 (54.08%), Query Frame = 0
Query: 124 VTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATF 221
V+ L + + + + +K ++ R +FCS+LVA+AL+E+ L+ + YFWPG+F E GEI+ + G L + +D +E+ ATF
Sbjct: 393 VSPLQNFTTQSVEIAKSVVASQKTKQSPHKRRKYFCSSLVASALKELGWLQTKRSCSYFWPGSFEEHGEIERSLHPGTTLGKEIDIDCRPVEVATATF 490
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|635361451|emb|CCI49601.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 62.003 bits (149), Expect = 1.423e-7 Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 0
Query: 123 KVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRATF 221
++ + + N + S M + + S + +FCS+LVA+AL++M L+ + YFWPG+F E GEI+ + G L + VD +E+ A F
Sbjct: 657 RLPSFVSQNHTSTTQSVKMSKDVRTKETSSKRKNYFCSSLVASALKDMGWLRTQRSCSYFWPGSFEEDGEIEKSLHPGITLGKEIDVDCRLVEVATAIF 755
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|1173945324|gb|OQR93964.1| (ribonuclease H2 subunit A [Achlya hypogyna]) HSP 1 Score: 61.2326 bits (147), Expect = 2.640e-7 Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0
Query: 157 FFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELGRA 219
+FCS LVAAAL + L+ D+ Y+WPG F EGGE++ G + + +D LE+GRA
Sbjct: 539 YFCSELVAAALMHLGWLRKDLPPSYYWPGNFQEGGELEVHLEPGVTIGPELALDCKFLEVGRA 601
BLAST of EWM29259.1 vs. NCBI_GenBank
Match: gi|953502461|emb|CEG36392.1| (ribonuclease h2 subunit [Plasmopara halstedii]) HSP 1 Score: 61.2326 bits (147), Expect = 2.827e-7 Identity = 51/191 (26.70%), Postives = 83/191 (43.46%), Query Frame = 0
Query: 27 LAWQLKFTSYMGVRKLQGQRTAAMEKKLQGFVERINGRPYGFPLTTLFAKKYITSDTDVAPVTAYGLPSPKSNTWHSNLRSVPFYPDFLNNRRRHSKVTALSASNSSQADSSSGMEVVEKARRKFSHERGFFCSNLVAAALREMCVLKADINDDYFWPGAFTEGGEIDDAFRDGYCLSDVMLVDTATLELG 217
+A+ + ++ + VRK++ +R+ + L FV R+NG Y F K SD ++A T HSK S SS +SS+ V + +R +FCS+LVAAA +E+ L+ FWPG+F +GGE++ R L +++D +E+G
Sbjct: 758 MAYAREVSNVIVVRKIETERSIELMDTLTDFVRRVNGNRYSLAEILRFTGK---SDRNLARSTLVT----------------------------HSKYEVGDDSISSNINSSTPSSPVTSSSDSTKSQRKYFCSSLVAAAWKELGWLQTKRKSSSFWPGSFEDGGEVERLLRPELVLGPEIVIDCRIVEVG 917 The following BLAST results are available for this feature:
BLAST of EWM29259.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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