rna1401, rna1401 (mRNA) Nannochloropsis gaditana

Overview
Namerna1401
Unique Namerna1401
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1798
Alignment locationCM002457.1:549582..550737 +

Link to JBrowse

Properties
Property NameValue
ProductFe-S metabolism associated domain, SufE-like protein
Orig transcript idgnl|cribi|Naga_100029g25.9531.mrna
Orig protein idgnl|cribi|Naga_100029g25.9531
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:549582..550737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g25gene1352Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1401rna1401-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29274.1cds1399Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1401 ID=rna1401|Name=rna1401|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp
AGGGAGCTGAGATCCGGCGCTTCCGAACCAGGACGTGAGTGCTTAAGCGT
GCCAACACGTTCCAAAGGCCTTGGGGTCCATGATTTATGTGCATCATTTT
AATTCCACACGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGC
AATCATGTCCACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCA
TTTCGACCATCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGC
CTTGTCAATAGGCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCAT
TAATTTGGATAAGCTGGCTAAGACCAGAGCCTTGACAGTATTACGCGAGT
CTCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCTTTTGAGCTG
CGTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGCCCTTATCAC
TATTGGAAGTCTGGCAGAGTACCTGATCAGCTCGGGGTCCGAGGGGTTGT
CGGGCGTCGGCTTCGTTTACGGCATTCCTATCCTTCTCATCGGGCTTTCG
TTGCAATACGCGCAGCTAAATCCCGTTCCTGTCGAGGTACGTCTTTTTTG
CGACCATGATCTGGCATGGCTCAAACAAAAGACCAGTCACGTGAGAGCTA
AGGTCTGCCCTTCTCCTGGTCACTCTTTCTCGGTCACCGACTCTGTACCG
CAAAGTCTATGGATGCGGCGGTACCCCATTCCTATGTCTATGAGAGACTA
GACTTGTACATTTGCTTGCTGAGCCTAAGGCGCGTCACGAGTTATCTTTT
ATTCCATATTGTATTCTCTTTTCCTCTCTTCCTGGAAACATTCCTCGCCT
CTAGTCGACTCCGGAAGCCGACCGACTATTTGAACAGAAATCGACGCCCA
CGATCCAGAAAATCAAAAAGGACGTGACCCGGCATCGTTACGGGGATGAC
GCGCACCTTGACACGACGGTTCAGGCCCTTGGCTTGGTAATGCCCAACAA
GGAGTTCCCGCAGCTCCAGTACCTGACACAGGGCGTGGAGAACGGCGAGC
TCGCGTTCTCCATGGTCTTCAAGAGCGACGACACGCCTTACCGTCTGTGG
GTGGAGCCCGAGCGCATTGCTCGCTACGAGACCTTCTTCGGGCCCGGAGT
GTGGGCCACGGTGGAAAAAGTGGACGCGGAGCGCCGACTCGTGGCCATCA
AGCTCGTGACAGGAGAGCGGCCGGCGTCTGCACAAGCGTCCCGACCAGAA
GGCGAGAGCGCTGCTCCCGCTGAGCCCGCCTCAGCTTAAGTGAGTCTAGC
CTGAAGGGCAGCAGGAGGACACTGCTGCCTAGAAACGTCTTCCACCGTGG
CAGTGCCTCGTTTTTCTGCCGTGGCCCTTAGTCCAGCACTTCCGTTTCTT
TTCCCCCACCGGGCCATGAACGAACGTTGTCTGATTAGTGTGTTAAGTGA
GCTTATCAAAGGGCGTACGAGTGCAGCGTGGCTTTTGGTAGCCTGGTAGC
TTTGTCGCTGCCAATCGACGTCATGTGTGAGATAGAATCGCAGGAAAGGG
GAAGAATACAAAGTGCCCTTATGCAGCAGCGCGAGTGTGCGAGTGGTCAC
ACCTTTCGGTAGTTTTCATCGCAATCAGAATCCTTTGTCGGAGAAAAAGG
ACTCATGGGAAAAAACAGGCAACGAAGGAGTTAATCCGATCAAAACTTGT
CCAGTACGTGTCGTGCTTTGTTTCATTTCTTATGCCTCTTCTCGTCGCGA
AGATTTCCTGGTGGAGAATGAGGAATGCATGGTCCTTGTCGGCGTGTG
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protein sequence of rna1401

>rna1401-protein ID=rna1401-protein|Name=rna1401|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MRLSSTVKDKMGTAQAVLILLISISLVKGFLVGHRHQLRVPTSSQRTQGA
KTTTYMSSTDIDESSLGLTPRLLEVSRAFQLMDERTRVQNLLALASSMKP
MKDFRKLSENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIE
GMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAE
SKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHA
GHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALS
IDAKTPAEAG
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mRNA from alignment at CM002457.1:549582..550737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1401 ID=rna1401|Name=rna1401|organism=Nannochloropsis gaditana|type=mRNA|length=1156bp|location=Sequence derived from alignment at CM002457.1:549582..550737+ (Nannochloropsis gaditana)
ATGCGGCTATCCTCTACAGTAAAGGATAAAATGGGCACCGCGCAGGCAGT
TCTAATCCTTTTGATCTCGATCTCTCTAGTAAAGGGCTTTTTGGTGGGCC
ACAGACATCAGTTGCGTGTGCCAACTTCGTCGCAAAGGACACAAGGGGCC
AAGACGACGACGTACATGTCCTCCACTGACATCGACGAGAGCAGCCTGGG
CCTGACCCCCCGCCTTTTGGAGGTCTCACGCGCCTTCCAACTCATGGACG
AACGCACGCGTGTACAGAATTTGCTGGCGTTGGCCTCTTCTATGAAGCCC
ATGAAGGATTTTCGGAAGCTGTCCGAAAATAAGGTCCCGGGATGCCTGTC
TACGGTGTACGTGCACGCCTTCATGCAAGACGGAAAAGTCTATTTCGAAG
GAGACTCAGACGCACAATTGACAAAGGGCTTGGTGGCTCTGCTGATTGAG
GGGATGTCTGGCTGCAGTGCTGAAGAGATTCAAGCAGTGAAACCAGAATT
TATCAAGTATGCGGGTATTGCAGCGAGCTTGACGCCCGGGTGAGTTAGAT
GTAAGGTGGAGATGCTGGCTGTCGGCATGTCTGTCGAAATACATGAGTAC
ATTAAGAACTGTTGATTGGGATAAGGAGAGAGCGACAAGGGCGCGAGGAC
CTGTGTGTCTTGCCTCTCCCAAGGACCACGGCCCGGTCTTTCTCCCGGCG
GCCTTGCTCGTAGCTTGGACTCGGTCGCTTCTCAATTTattccccacccc
tctcgcGTGCAGGCGCAACAACGGGTTTCTGAACATGTTGGCCATGCTCA
AGCGCAAGGCTGTGGAGGCTGAGTcgaagggcgagggcgctGGGCAGGAG
GAGCCGGCCGTGGAATTCCAGGAGGACATTGCCCGACCTGTCTACAGCAG
CTGTATGAAGAAACTGATCAATTTCCTGAAGCCGAAGCGTCTGGAGATGC
AGGACGATTCAGCGCAGCACGCGGGCCACGCAGGCGCCAAAGGCCTCGGG
GGAGAGAGCCATTTCAGCCTGCGGATCGTCGCCGACTGCTTCGAGGGCCT
GAGCCTCGTCCAGCGGCACAAGCTGGTGTACACGGTGCTGGCGGCAGAGA
TGCAGCAGATCCACGCGCTGTCCATCGATGCCAAAACCCCCGCAGAGGCT
GGTTAA
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Coding sequence (CDS) from alignment at CM002457.1:549582..550737+

>rna1401 ID=rna1401|Name=rna1401|organism=Nannochloropsis gaditana|type=CDS|length=1866bp|location=Sequence derived from alignment at CM002457.1:549582..550737+ (Nannochloropsis gaditana)
ATGCGGCTATCCTCTACAGTAAAGGATAAAATGGGCACCGCGCAGGCAGT
TCTAATCCTTTTGATCTCGATCTCTCTAGTAAAGGGCTTTTTGGTGGGCC
ACAGACATCAGTTGCGTGTGCCAACTTCGTCGCAAAGGACACAAGGGGCC
AAGACGACGACGTACATGTCCTCCACTGACATCGACGAGAGCAGCCTGGG
CCTGACCCCCCGCCTTTTGGAGGTCTCACGCGCCTTCCAACTCATGGACG
AACGCACGCGTGTACAGAATTTGCTGGCGTTGGCCTCTTCTATGAAGCCC
ATGAAGGATTTTCGGAAGCTGTCCGAAAATAAGGTCCCGGGATGCCTGTC
TACGGTGTACGTGCACGCCTTCATGCAAGACGGAAAAGTCTATTTCGAAG
GAGACTCAGACGCACAATTGACAAAGGGCTTGGTGGCTCTGCTGATTGAG
GGGATGTCTGGCTGCAGTGCTGAAGAGATTCAAGCAGTGAAACCAGAATT
TATCAAGTATGCGGGTATTGCAGCGAGCTTGACGCCCGGGCGCAACAACG
GGTTTCTGAACATGTTGGCCATGCTCAAGCGCAAGGCTGTGGAGGCTGAG
TcgaagggcgagggcgctGGGCAGGAGGAGCCGGCCGTGGAATTCCAGGA
GGACATTGCCCGACCTGTCTACAGCAGCTGTATGAAGAAACTGATCAATT
TCCTGAAGCCGAAGCGTCTGGAGATGCAGGACGATTCAGCGCAGCACGCG
GGCCACGCAGGCGCCAAAGGCCTCGGGGGAGAGAGCCATTTCAGCCTGCG
GATCGTCGCCGACTGCTTCGAGGGCCTGAGCCTCGTCCAGCGGCACAAGC
TGGTGTACACGGTGCTGGCGGCAGAGATGCAGCAGATCCACGCGCTGTCC
ATCGATGCCAAAACCCCCGCAGAGGCTGGTTAAATGCGGCTATCCTCTAC
AGTAAAGGATAAAATGGGCACCGCGCAGGCAGTTCTAATCCTTTTGATCT
CGATCTCTCTAGTAAAGGGCTTTTTGGTGGGCCACAGACATCAGTTGCGT
GTGCCAACTTCGTCGCAAAGGACACAAGGGGCCAAGACGACGACGTACAT
GTCCTCCACTGACATCGACGAGAGCAGCCTGGGCCTGACCCCCCGCCTTT
TGGAGGTCTCACGCGCCTTCCAACTCATGGACGAACGCACGCGTGTACAG
AATTTGCTGGCGTTGGCCTCTTCTATGAAGCCCATGAAGGATTTTCGGAA
GCTGTCCGAAAATAAGGTCCCGGGATGCCTGTCTACGGTGTACGTGCACG
CCTTCATGCAAGACGGAAAAGTCTATTTCGAAGGAGACTCAGACGCACAA
TTGACAAAGGGCTTGGTGGCTCTGCTGATTGAGGGGATGTCTGGCTGCAG
TGCTGAAGAGATTCAAGCAGTGAAACCAGAATTTATCAAGTATGCGGGTA
TTGCAGCGAGCTTGACGCCCGGGCGCAACAACGGGTTTCTGAACATGTTG
GCCATGCTCAAGCGCAAGGCTGTGGAGGCTGAGTcgaagggcgagggcgc
tGGGCAGGAGGAGCCGGCCGTGGAATTCCAGGAGGACATTGCCCGACCTG
TCTACAGCAGCTGTATGAAGAAACTGATCAATTTCCTGAAGCCGAAGCGT
CTGGAGATGCAGGACGATTCAGCGCAGCACGCGGGCCACGCAGGCGCCAA
AGGCCTCGGGGGAGAGAGCCATTTCAGCCTGCGGATCGTCGCCGACTGCT
TCGAGGGCCTGAGCCTCGTCCAGCGGCACAAGCTGGTGTACACGGTGCTG
GCGGCAGAGATGCAGCAGATCCACGCGCTGTCCATCGATGCCAAAACCCC
CGCAGAGGCTGGTTAA
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Synonyms
Publications