EWM29274.1, cds1399 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|585111797|gb|EWM29274.1| (Fe-S metabolism associated domain, SufE-like protein [Nannochloropsis gaditana]) HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query: 1 MRLSSTVKDKMGTAQAVLILLISISLVKGFLVGHRHQLRVPTSSQRTQGAKTTTYMSSTDIDESSLGLTPRLLEVSRAFQLMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310
MRLSSTVKDKMGTAQAVLILLISISLVKGFLVGHRHQLRVPTSSQRTQGAKTTTYMSSTDIDESSLGLTPRLLEVSRAFQLMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG
Sbjct: 1 MRLSSTVKDKMGTAQAVLILLISISLVKGFLVGHRHQLRVPTSSQRTQGAKTTTYMSSTDIDESSLGLTPRLLEVSRAFQLMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|545702082|ref|XP_005703372.1| (cysteine desulfuration protein SufE (plastid) [Galdieria sulphuraria] >gi|452819800|gb|EME26852.1| cysteine desulfuration protein SufE [Galdieria sulphuraria]) HSP 1 Score: 258.84 bits (660), Expect = 1.344e-81 Identity = 141/289 (48.79%), Postives = 192/289 (66.44%), Query Frame = 0
Query: 34 HRHQLRVPTSSQRTQGAKTTTYMSSTDIDESSLGLTPRLLEVSRAFQLM-DERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQE-----------EPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGL-GGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQ-IHALSIDAKTPAE 308
++ +L P S+ R Q +DE LGLTP L + ++F D + RVQ LL LA +++P+ K +ENKVPGCLSTV+V + K++F+GDSDAQLTKGL+ALLI+G++GC+ EEI+ + PEF+ AG++ SLTPGRNNGFLNML +K KA EA SK G +E + + E + P+YS+ ++KL LKP RLE+ DDS QHAGH GAKGL E+HFS+ +V+D F GLSLV+RH+LVYT+L E+++ +HAL I AKTP+E
Sbjct: 44 NKKRLHFPKSTFRLQ--------IRCQVDEKKLGLTPELARLVKSFAAAPDPKLRVQQLLYLAQTLEPLPFQYKTNENKVPGCLSTVHVVGDCDNEKIFFKGDSDAQLTKGLLALLIKGLNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETASGPIYSAIVEKLQK-LKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSE 323
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|397567524|gb|EJK45638.1| (hypothetical protein THAOC_35737 [Thalassiosira oceanica]) HSP 1 Score: 234.958 bits (598), Expect = 4.608e-72 Identity = 136/279 (48.75%), Postives = 187/279 (67.03%), Query Frame = 0
Query: 48 QGAKTTTYM-SSTDIDESSLGLTPRLLEVSRAFQ-LMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQ----DGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAV-------EAESKGEGAGQE---EPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGL--GGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAE 308
+G T T + SST+ID +L LTP L ++ AF + DE+TR + LL +A+ + + D ++ ENKVPGCLSTV+V + D V + GDSD LTKGL+ALLI G+SGC+AE+I AV P+FI+ A I+ +LTPGRNNGFLNMLA++K+KA E+ + G+ AG E E F E +P+Y++ + L+ LKP +E+ D+S+QHAGH GAKG GESHF+L +VAD F+GL LV+RH+L+Y +L M +IHAL I AK+P E
Sbjct: 55 RGDTTATALHSSTEIDTDALNLTPELEMMTGAFSSIADEKTRHKQLLYMANQLPTVDDSIRIPENKVPGCLSTVHVDCTTEEKDGDTLVNYVGDSDGLLTKGLLALLIRGLSGCTAEQIAAVDPQFIQAAKISQTLTPGRNNGFLNMLAVMKKKASDAVEGGDESPASGDAAGAENSGEVVTSFDEVEGKPMYNAILSTLVPILKPVSIELVDNSSQHAGHGGAKGWEESGESHFALDVVADVFDGLPLVKRHQLIYMLLGEVMPKIHALEIRAKSPGE 333
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|1210518088|dbj|GAX23019.1| (hypothetical protein FisN_15Hh082 [Fistulifera solaris]) HSP 1 Score: 231.106 bits (588), Expect = 2.101e-71 Identity = 130/269 (48.33%), Postives = 176/269 (65.43%), Query Frame = 0
Query: 49 GAKTTTYMSSTDID---ESSLGLTPRLLEVSRAFQ-LMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDG-----KVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAE 308
G +++ SST D ++ + LTP LL+++ AF+ + D++ R + LL +A+ + P+ + + ENKVPGCLSTVYV D ++ F GDSD LTKGLVALL+ G+SG +AE+IQ V P FI+ GIAASLTPGRNNGFLNML ++K KA + E+ + G E A D +P+Y + ++ L LKP L+++D S QHAGH A GE+HF+L IVA FEGL+LV+RHKLVY +L M +IHAL I AKTP E
Sbjct: 2 GLRSSAASSSTQEDTHTDNPMRLTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGVIRIEFVGDSDGLLTKGLVALLVRGLSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKAKQLEANYQATGPSESATTTAGD-EKPMYQAIVQGL-QALKPVSLKLEDVSYQHAGHREASK-DGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEE 267
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|1210517671|dbj|GAX23367.1| (hypothetical protein FisN_15Lh082 [Fistulifera solaris]) HSP 1 Score: 227.639 bits (579), Expect = 8.220e-70 Identity = 128/269 (47.58%), Postives = 174/269 (64.68%), Query Frame = 0
Query: 49 GAKTTTYMSSTDID---ESSLGLTPRLLEVSRAFQ-LMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDG-----KVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAE 308
G +++ SST D ++ + LTP LL+++ AF+ + D++ R + LL +A+ + P+ + + ENKVPGCLSTVYV D ++ F GDSD LTKGLVALL+ G+SG +A +IQ V P FI+ GIAASLTPGRNNGFLNML ++K KA + E+ + G E D +P+Y + ++ L LKP L+++D S QHAGH G GE+HF+L IVA FEGL+LV+RHKLVY +L M +IHAL I AKTP E
Sbjct: 17 GLRSSAASSSTQDDTHTDNPMRLTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGIIRIEFVGDSDGLLTKGLVALLVRGLSGNTAADIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKMKAKQLEANYQATGPSETTSSTGGD-EKPMYQAIVQGL-QTLKPVSLKLEDVSYQHAGH-GEASKDGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEE 282
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|548861777|gb|ERN19148.1| (hypothetical protein AMTR_s00061p00163190 [Amborella trichopoda]) HSP 1 Score: 207.608 bits (527), Expect = 4.671e-62 Identity = 122/275 (44.36%), Postives = 163/275 (59.27%), Query Frame = 0
Query: 68 LTPRLLEVSRAFQ-LMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDGK-VYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGA---------GQEEPAVEFQ--EDIARPVYSSCMK--------------------KLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQ-IHALSIDAKTPAE 308
L P+L FQ + D RT+ + LL + P+ + K ENKV GC+S V+V A++ D K V+FE DSDA LTKGL ALL+EG+SG S EI + P+FI G+ SL+P RNNGFLNM +++RKA++ + E + G +VE Q E +P S+ +K KL L P LE++D S QHAGH GAKG GGE+HF+LRIV+D FEG SL++RH+LVY +L E+ +HALSI AKTP+E
Sbjct: 7 LPPKLKNTVELFQSVQDPRTKYEQLLYYGRKLNPLGNEFKTRENKVEGCVSQVWVRAYLDDSKNVWFEADSDAVLTKGLAALLVEGLSGNSPPEIVKISPDFIHIMGLNQSLSPSRNNGFLNMFKLMQRKALQLYIESEKSEDQKELRSLGSNGSSVEAQQIEVSEKPSESADVKSHENEMGFTVLSERGERIIEKLERELVPIELEVEDVSYQHAGHMGAKGEGGETHFNLRIVSDKFEGKSLIKRHRLVYDLLKEELDSGLHALSIVAKTPSE 281
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|769796032|ref|XP_006857681.2| (sufE-like protein 1, chloroplastic/mitochondrial [Amborella trichopoda]) HSP 1 Score: 207.608 bits (527), Expect = 3.411e-61 Identity = 122/275 (44.36%), Postives = 163/275 (59.27%), Query Frame = 0
Query: 68 LTPRLLEVSRAFQ-LMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQDGK-VYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGA---------GQEEPAVEFQ--EDIARPVYSSCMK--------------------KLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQ-IHALSIDAKTPAE 308
L P+L FQ + D RT+ + LL + P+ + K ENKV GC+S V+V A++ D K V+FE DSDA LTKGL ALL+EG+SG S EI + P+FI G+ SL+P RNNGFLNM +++RKA++ + E + G +VE Q E +P S+ +K KL L P LE++D S QHAGH GAKG GGE+HF+LRIV+D FEG SL++RH+LVY +L E+ +HALSI AKTP+E
Sbjct: 76 LPPKLKNTVELFQSVQDPRTKYEQLLYYGRKLNPLGNEFKTRENKVEGCVSQVWVRAYLDDSKNVWFEADSDAVLTKGLAALLVEGLSGNSPPEIVKISPDFIHIMGLNQSLSPSRNNGFLNMFKLMQRKALQLYIESEKSEDQKELRSLGSNGSSVEAQQIEVSEKPSESADVKSHENEMGFTVLSERGERIIEKLERELVPIELEVEDVSYQHAGHMGAKGEGGETHFNLRIVSDKFEGKSLIKRHRLVYDLLKEELDSGLHALSIVAKTPSE 350
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|544217304|ref|XP_005538796.1| (unknown protein for iron-sulfur cluster formation sufE [Cyanidioschyzon merolae strain 10D] >gi|449019358|dbj|BAM82760.1| unknown protein for iron-sulfur cluster formation sufE [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 201.445 bits (511), Expect = 2.890e-59 Identity = 113/236 (47.88%), Postives = 155/236 (65.68%), Query Frame = 0
Query: 80 QLMDERTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFM-QDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPA---VEFQEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEM--QQIHALSIDAKTPAEA 309
+L D++ RVQ LL +AS++ P R++ N+V GCLS V+V AF+ ++GKV F GDSD+QLTKGLVA LI G+SG S EE+ AV P+FIK +G+ SLTPGR NGFLNML ++ KA GE + A V +E I + + LKP +E++DDSA+H GH GA GE+HF+++IV+D F+ + V+RHKLVY +L+ E+ ++IHALSI TP EA
Sbjct: 88 KLGDQKLRVQQLLHMASTLPPFPRERRVLANRVRGCLSVVHVDAFLDKEGKVEFIGDSDSQLTKGLVAFLIRGLSGYSVEEVCAVTPDFIKESGLGVSLTPGRTNGFLNMLRTMQEKA-RMLGMGEANSMQSTANGKVSMKEVI---------ENKLQVLKPDLIEIRDDSAKHRGHEGAHERRGETHFTIKIVSDTFKDMPEVKRHKLVYALLSEELNSRRIHALSIITLTPIEA 313
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|1023964783|gb|KZV14237.1| (sufE-like protein, chloroplastic-like [Dorcoceras hygrometricum]) HSP 1 Score: 201.06 bits (510), Expect = 4.899e-59 Identity = 118/279 (42.29%), Postives = 176/279 (63.08%), Query Frame = 0
Query: 39 RVPTSSQRTQGAKTTTYMSSTDIDESSLGLTPRLLEVSRAFQLMDE-RTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQ-DGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIA----RPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQ-QIHALSIDAKTPAEAG 310
R+PT +++ +S I+E L P+L E+ F+ + E + + + LL ++KP++ K + NKV GC+S V+V A++ D V FE DSD+ LTKGL ALL++G+SG A+EI V P+F+ G+ SLTP RNNGF+NML ++++KA++ + E G A EF E A R V+ M L L+P LE++D S QHAGH+G +G E+HF++++V++ FEG SLV+RH+L+Y++L E+Q +HALSI AKTPAE G
Sbjct: 47 RIPTKKPNFSAPSSSSSVSLQSIEE----LPPKLQEIINLFRGVQEPKAKYEQLLFYGRNLKPLEFQYKNNANKVQGCVSQVWVRAYVDSDKNVIFEADSDSVLTKGLAALLVQGLSGRPADEIVRVSPDFVVLLGLQQSLTPSRNNGFVNMLKLMQKKALQLSVEAEKTGNSN-AEEFGEGPAMLGSRGVWIKEM--LEKELRPLELEVEDISYQHAGHSGFRGSDAETHFNVKVVSEEFEGKSLVKRHRLIYSLLQEELQGGLHALSIVAKTPAEVG 318
BLAST of EWM29274.1 vs. NCBI_GenBank
Match: gi|643722930|gb|KDP32627.1| (hypothetical protein JCGZ_13177 [Jatropha curcas]) HSP 1 Score: 201.06 bits (510), Expect = 1.466e-58 Identity = 128/315 (40.63%), Postives = 180/315 (57.14%), Query Frame = 0
Query: 39 RVPTSSQRTQGAKTTTYMSSTDIDESSLGLTPRLLEVSRAFQLMDE-RTRVQNLLALASSMKPMKDFRKLSENKVPGCLSTVYVHAFMQ-DGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKA----VEAESKGEGA---------GQEEPA--------------VEFQEDIARPVYSSCMKKLINF---------------LKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQ-IHALSIDAKTPAE 308
++PT +Q + A + +S I+E L P+L E+ + FQ + E + + + LL ++KP+ K ENKV GC+S V+V A++ D V FE DSD+ LTKGL ALL++G+SG +EI V P+F G+ SLTP RNNGFLNML +++RKA VEAE KG G+ G E+ + +E +D+ S M ++ LKP LE++D S QHAGHAG +G GE+HF+LR+V+ FEG SLV+RH+L+Y +L E+Q +HALSI AKTPAE
Sbjct: 48 KIPTRTQPSLFASPPSAVSLQPIEE----LPPKLQEIVKLFQSVQEPKAKYEQLLFYGKNLKPLDAQFKTRENKVEGCVSQVWVRAYLDVDKNVVFEADSDSVLTKGLAALLVQGLSGRPVQEILRVSPDFAVLLGLQQSLTPSRNNGFLNMLKLMQRKALELYVEAE-KGGGSDHGSNSGTDGSEDLSNKVDSVKNEVKSANLESNDDVGVDSLSMGMNSEVDNLGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGSDGETHFNLRVVSKEFEGKSLVKRHRLIYGLLQEELQSGLHALSIVAKTPAE 357 The following BLAST results are available for this feature:
BLAST of EWM29274.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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