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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100029g26.9546.mrna |
| Orig protein id | gnl|cribi|Naga_100029g26.9546 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:547021..549370 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1400 ID=rna1400|Name=rna1400|organism=Nannochloropsis gaditana|type=mRNA|length=1530bp
AGGGAGCTGAGATCCGGCGCTTCCGAACCAGGACGTGAGTGCTTAAGCGT
GCCAACACGTTCCAAAGGCCTTGGGGTCCATGATTTATGTGCATCATTTT
AATTCCACACGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGC
AATCATGTCCACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCA
TTTCGACCATCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGC
CTTGTCAATAGGCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCAT
TAATTTGGATAAGCTGGCTAAGACCAGAGCCTTGACAGTATTACGCGAGT
CTCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCTTTTGAGCTG
CGTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGCCCTTATCAC
TATTGGAAGTCTGGCAGAGTACCTGATCAGCTCGGGGTCCGAGGGGTTGT
CGGGCGTCGGCTTCGTTTACGGCATTCCTATCCTTCTCATCGGGCTTTCG
TTGCAATACGCGCAGCTAAATCCCGTTCCTGTCGAGTCGACTCCGGAAGC
CGACCGACTATTTGAACAGAAATCGACGCCCACGATCCAGAAAATCAAAA
AGGACGTGACCCGGCATCGTTACGGGGATGACGCGCACCTTGACACGACG
GTTCAGGCCCTTGGCTTGGTAATGCCCAACAAGGAGTTCCCGCAGCTCCA
GTACCTGACACAGGGCGTGGAGAACGGCGAGCTCGCGTTCTCCATGGTCT
TCAAGAGCGACGACACGCCTTACCGTCTGTGGGTGGAGCCCGAGCGCATT
GCTCGCTACGAGACCTTCTTCGGGCCCGGAGTGTGGGCCACGGTGGAAAA
AGTGGACGCGGAGCGCCGACTCGTGGCCATCAAGCTCGTGACAGGAGAGC
GGCCGGCGTCTGCACAAGCGTCCCGACCAGAAGGCGAGAGCGCTGCTCCC
GCTGAGCCCGCCTCAGCTTAAGTGAGTCTAGCCTGAAGGGCAGCAGGAGG
ACACTGCTGCCTAGAAACGTCTTCCACCGTGGCAGTGCCTCGTTTTTCTG
CCGTGGCCCTTAGTCCAGCACTTCCGTTTCTTTTCCCCCACCGGGCCATG
AACGAACGTTGTCTGATTAGTGTGTTAAGTGAGCTTATCAAAGGGCGTAC
GAGTGCAGCGTGGCTTTTGGTAGCCTGGTAGCTTTGTCGCTGCCAATCGA
CGTCATGTGTGAGATAGAATCGCAGGAAAGGGGAAGAATACAAAGTGCCC
TTATGCAGCAGCGCGAGTGTGCGAGTGGTCACACCTTTCGGTAGTTTTCA
TCGCAATCAGAATCCTTTGTCGGAGAAAAAGGACTCATGGGAAAAAACAG
GCAACGAAGGAGTTAATCCGATCAAAACTTGTCCAGTACGTGTCGTGCTT
TGTTTCATTTCTTATGCCTCTTCTCGTCGCGAAGATTTCCTGGTGGAGAA
TGAGGAATGCATGGTCCTTGTCGGCGTGTG back to topprotein sequence of rna1400 >rna1400-protein ID=rna1400-protein|Name=rna1400|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVI
PAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVG
TDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIP
ILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKVCPSPGHSF
SVTDSVPQSLWMRRYPIPMSMRD back to topmRNA from alignment at CM002457.1:547021..549370- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1400 ID=rna1400|Name=rna1400|organism=Nannochloropsis gaditana|type=mRNA|length=2350bp|location=Sequence derived from alignment at CM002457.1:547021..549370- (Nannochloropsis gaditana)
AGGGAGCTGAGATCCGGCGCTTCCGAACCAGGACGTGAGTGCTTAAGCGT
GCCAACACGTTCCAAAGGCCTTGGGGTCCATGATTTATGTGCATCATTTT
AATTCCACACGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGC
AATCATGTCCACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCA
TTTCGACCATCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGC
CTTGTCAATAGGCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCAT
TAATTTGGATAAGCTGGCTAAGACCAGGTAAGGCTTGTTACGAATGAGGA
CGTGGCATGTATGACGTTGACGGGGTCAGACCATCTCCATTTGCCAGGGG
AAAGAAGGATGTAAGATTGCATAGTAGGAGGAGAATGTTGCGCCTGTATA
TTGGCTCCAACACACTAGGCTATGTCGGGCAGCTCTCTATGGAGGTAACA
CTAACACCTTGTGTACGGAGAACACGTCGATAAGTCCTTCGTGGGACGTC
AGTTAAATCGGCGCATCGGATGCTACATAAACGAGATTGGGGAAAGAGGA
GCATTGCAGCGATGTTTATGTATCTGTGCCCTTTGAAAGTTATGTTTGCC
ACACATTTGTCGTCTGAGAAGAAGATGGGGGCATGTCTCAACCAAGCGCC
CAGGTCTAACCTTCGGATTACCCACCATCCTCACAGAGCCTTGACAGTAT
TACGCGAGTCTCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCT
TTTGAGCTGCGTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGC
CCTTATCACTATTGGAAGTCTGGCAGAGGTAGGTGCTTCGCAGGTTGACA
TAAATCTCCATGTGATGGTGGGATACAAGGGCACTTTCGCAAGCATTGAA
AGTGAAGATGCTCCATTTGCAGCAACTTCTCTTCACACGCCGTATCTTTG
CAATACGTACACACGCATCAGTACCTGATCAGCTCGGGGTCCGAGGGGTT
GTCGGGCGTCGGCTTCGTTTACGGCATTCCTATCCTTCTCATCGGGCTTT
CGTTGCAATACGCGCAGCTAAATCCCGTTCCTGTCGAGGTACGTCTTTTT
TGCGACCATGATCTGGCATGGCTCAAACAAAAGACCAGTCACGTGAGAGC
TAAGGTCTGCCCTTCTCCTGGTCACTCTTTCTCGGTCACCGACTCTGTAC
CGCAAAGTCTATGGATGCGGCGGTACCCCATTCCTATGTCTATGAGAGAC
TAGACTTGTACATTTGCTTGCTGAGCCTAAGGCGCGTCACGAGTTATCTT
TTATTCCATATTGTATTCTCTTTTCCTCTCTTCCTGGAAACATTCCTCGC
CTCTAGTCGACTCCGGAAGCCGACCGACTATTTGAACAGAAATCGACGCC
CACGATCCAGAAAATCAAAAAGGACGTGACCCGGCATCGTTACGGGGATG
ACGCGCACCTTGACACGACGGTTCAGGCCCTTGGCTTGGTAATGCCCAAC
AAGGAGTTCCCGCAGCTCCAGTACCTGACACAGGGCGTGGAGAACGGCGA
GCTCGCGTTCTCCATGGTCTTCAAGAGCGACGACACGCCTTACCGTCTGT
GGGTGGAGCCCGAGCGCATTGCTCGCTACGAGACCTTCTTCGGGCCCGGA
GTGTGGGCCACGGTGGAAAAAGTGGACGCGGAGCGCCGACTCGTGGCCAT
CAAGCTCGTGACAGGAGAGCGGCCGGCGTCTGCACAAGCGTCCCGACCAG
AAGGCGAGAGCGCTGCTCCCGCTGAGCCCGCCTCAGCTTAAGTGAGTCTA
GCCTGAAGGGCAGCAGGAGGACACTGCTGCCTAGAAACGTCTTCCACCGT
GGCAGTGCCTCGTTTTTCTGCCGTGGCCCTTAGTCCAGCACTTCCGTTTC
TTTTCCCCCACCGGGCCATGAACGAACGTTGTCTGATTAGTGTGTTAAGT
GAGCTTATCAAAGGGCGTACGAGTGCAGCGTGGCTTTTGGTAGCCTGGTA
GCTTTGTCGCTGCCAATCGACGTCATGTGTGAGATAGAATCGCAGGAAAG
GGGAAGAATACAAAGTGCCCTTATGCAGCAGCGCGAGTGTGCGAGTGGTC
ACACCTTTCGGTAGTTTTCATCGCAATCAGAATCCTTTGTCGGAGAAAAA
GGACTCATGGGAAAAAACAGGCAACGAAGGAGTTAATCCGATCAAAACTT
GTCCAGTACGTGTCGTGCTTTGTTTCATTTCTTATGCCTCTTCTCGTCGC
GAAGATTTCCTGGTGGAGAATGAGGAATGCATGGTCCTTGTCGGCGTGTG
back to topCoding sequence (CDS) from alignment at CM002457.1:547021..549370- >rna1400 ID=rna1400|Name=rna1400|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002457.1:547021..549370- (Nannochloropsis gaditana)
TACCTGATCAGCTCGGGGTCCGAGGGGTTGTCGGGCGTCGGCTTCGTTTA
CGGCATTCCTATCCTTCTCATCGGGCTTTCGTTGCAATACGCGCAGCTAA
ATCCCGTTCCTGTCGAGGTACGTCTTTTTTGCGACCATGATCTGGCATGG
CTCAAACAAAAGACCAGTCACGTGAGAGCTAAGGTCTGCCCTTCTCCTGG
TCACTCTTTCTCGGTCACCGACTCTGTACCGCAAAGTCTATGGATGCGGC
GGTACCCCATTCCTATGTCTATGAGAGACTAGAGCCTTGACAGTATTACG
CGAGTCTCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCTTTTG
AGCTGCGTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGCCCTT
ATCACTATTGGAAGTCTGGCAGAGATGATTTATGTGCATCATTTTAATTC
CACACGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGCAATCA
TGTCCACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCATTTCG
ACCATCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGCCTTGT
CAATAGGCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCATTAATT
TGGATAAGCTGGCTAAGACCAGTACCTGATCAGCTCGGGGTCCGAGGGGT
TGTCGGGCGTCGGCTTCGTTTACGGCATTCCTATCCTTCTCATCGGGCTT
TCGTTGCAATACGCGCAGCTAAATCCCGTTCCTGTCGAGGTACGTCTTTT
TTGCGACCATGATCTGGCATGGCTCAAACAAAAGACCAGTCACGTGAGAG
CTAAGGTCTGCCCTTCTCCTGGTCACTCTTTCTCGGTCACCGACTCTGTA
CCGCAAAGTCTATGGATGCGGCGGTACCCCATTCCTATGTCTATGAGAGA
CTAGAGCCTTGACAGTATTACGCGAGTCTCAGCAAGGAGGTGATAACATG
GTTGGCACCGATGTTCCTTTTGAGCTGCGTGGGTTTTCCTTGGCAACTGT
CGCATTGGGAGTTGGTGCCCTTATCACTATTGGAAGTCTGGCAGAGATGA
TTTATGTGCATCATTTTAATTCCACACGTGATGCTTCTTTTCTTTCGGAA
TTTGGTCCGCGCAGCGCAATCATGTCCACGATGCGGCTTGCTTTCGCTCT
TGGCCTTCTCTGCGTCATTTCGACCATCGCGAATGCTTTTGTCATTCCTG
CAGCCAAGTCTTCAAGCCTTGTCAATAGGCAATACCACGCTCGTTACGGG
CAGCAGCGTGGCGTCATTAATTTGGATAAGCTGGCTAAGACCAGTACCTG
ATCAGCTCGGGGTCCGAGGGGTTGTCGGGCGTCGGCTTCGTTTACGGCAT
TCCTATCCTTCTCATCGGGCTTTCGTTGCAATACGCGCAGCTAAATCCCG
TTCCTGTCGAGGTACGTCTTTTTTGCGACCATGATCTGGCATGGCTCAAA
CAAAAGACCAGTCACGTGAGAGCTAAGGTCTGCCCTTCTCCTGGTCACTC
TTTCTCGGTCACCGACTCTGTACCGCAAAGTCTATGGATGCGGCGGTACC
CCATTCCTATGTCTATGAGAGACTAGAGCCTTGACAGTATTACGCGAGTC
TCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCTTTTGAGCTGC
GTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGCCCTTATCACT
ATTGGAAGTCTGGCAGAGATGATTTATGTGCATCATTTTAATTCCACACG
TGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGCAATCATGTCCA
CGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCATTTCGACCATC
GCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGCCTTGTCAATAG
GCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCATTAATTTGGATA
AGCTGGCTAAGACCAG back to top
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