EWM29289.1, cds1398 (CDS) Nannochloropsis gaditana

Overview
NameEWM29289.1
Unique Namecds1398
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:549044..549291 -
Alignment locationCM002457.1:548493..548634 -
Alignment locationCM002457.1:548068..548349 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29289.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100029g26.9546.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:549044..549291 -
CM002457.1supercontigCM002457.1:548493..548634 -
CM002457.1supercontigCM002457.1:548068..548349 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021275DUF2854
Homology
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|585111812|gb|EWM29289.1| (hypothetical protein Naga_100029g26 [Nannochloropsis gaditana])

HSP 1 Score: 458.759 bits (1179), Expect = 2.506e-163
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKVCPSPGHSFSVTDSVPQSLWMRRYPIPMSMRD 223
            MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKVCPSPGHSFSVTDSVPQSLWMRRYPIPMSMRD
Sbjct:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKVCPSPGHSFSVTDSVPQSLWMRRYPIPMSMRD 223          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|585111811|gb|EWM29288.1| (hypothetical protein Naga_100029g26 [Nannochloropsis gaditana])

HSP 1 Score: 340.502 bits (872), Expect = 2.619e-115
Identity = 173/192 (90.10%), Postives = 177/192 (92.19%), Query Frame = 0
Query:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKV 192
            MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVE     D      +QK++    K+
Sbjct:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADR---LFEQKSTPTIQKI 189          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|219125791|ref|XP_002183156.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405431|gb|EEC45374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.8113 bits (216), Expect = 4.591e-17
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0
Query:  104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVPV 168
            PFE+RGFSL  + +G G LIT  S AEYL  SG +GL  SG+GFVYGIP+ L G +L+YA++NPVPV
Sbjct:   84 PFEIRGFSLGNLVVGAGILITFASFAEYLSESGGDGLNVSGLGFVYGIPVFLAGAALKYAEINPVPV 150          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|544209736|ref|XP_005535270.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449015582|dbj|BAM78984.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 80.8777 bits (198), Expect = 3.028e-14
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 0
Query:  103 VPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTS 186
            VPFELRGFSLA V  G+GAL+T+ SL  Y  S+GS   + +  +YG+PILL+GL+L YA+L PVP+        DL  L+++ +
Sbjct:   81 VPFELRGFSLAKVVTGIGALLTVYSLYVYFKSAGSASETSLTLIYGMPILLLGLALWYAELEPVPIST----TDDLVVLRERKA 160          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1210521445|dbj|GAX19435.1| (hypothetical protein FisN_19Hh005 [Fistulifera solaris])

HSP 1 Score: 78.5666 bits (192), Expect = 3.828e-14
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   95 GDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEG-LSGVGFVYGIPILLIGLSLQYAQLNPVP 167
            G N  G + PFE+RGFSL    +G+G LITI S AEYL     EG +SG+GFVYGIPI L G +L+YA++ PVP
Sbjct:   20 GVNNAG-EPPFEIRGFSLGNSVIGLGLLITIASFAEYLAQD--EGSMSGLGFVYGIPIFLAGSALKYAEIEPVP 90          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1210524721|dbj|GAX16429.1| (hypothetical protein FisN_19Lh005 [Fistulifera solaris])

HSP 1 Score: 78.1814 bits (191), Expect = 5.430e-14
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   95 GDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEG-LSGVGFVYGIPILLIGLSLQYAQLNPVP 167
            G N  G + PFE+RGFSL    +G+G LITI S AEYL     EG +SG+GFVYGIPI L G +L+YA++ PVP
Sbjct:   20 GVNNAG-EPPFEIRGFSLGNSVIGLGLLITIASFAEYLAQD--EGSMSGLGFVYGIPIFLAGSALKYAEIEPVP 90          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1189387654|gb|OSX74706.1| (hypothetical protein BU14_0271s0001 [Porphyra umbilicalis])

HSP 1 Score: 77.7962 bits (190), Expect = 1.069e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   96 DNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPV 168
            D +   ++PFE+RGFSLA V L  G  IT  S   Y  S+G+   + +GFVYG+P+LLIG +L+YA+L PVP+
Sbjct:   62 DAVQEKEIPFEIRGFSLANVGLLFGFAITGYSFVTYFASNGTASATSLGFVYGVPVLLIGCALKYAELQPVPL 134          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|224000149|ref|XP_002289747.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974955|gb|EED93284.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 76.6406 bits (187), Expect = 3.494e-13
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0
Query:  104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVP 167
            PFE+RGFSL       G  +T+ S AEYL SSG +GL  SG+GFVYGIPI L G +L+YA+++PVP
Sbjct:   76 PFEIRGFSLGNFITIAGIAVTVLSFAEYLSSSGGDGLNVSGLGFVYGIPITLAGAALKYAEIDPVP 141          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1072234715|gb|OEU19444.1| (hypothetical protein FRACYDRAFT_162891, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.1662 bits (165), Expect = 1.267e-10
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0
Query:  109 GFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVPV 168
            GFSL  + +  G +IT+ S AEYL  S  EGL  SG+GFVYGIP+ L G +L+YA++NPVP+
Sbjct:    1 GFSLGNLVILSGVVITVLSFAEYLSDSSGEGLNVSGLGFVYGIPVCLAGAALKYAEINPVPL 62          
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|298713742|emb|CBJ33716.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.3958 bits (163), Expect = 1.041e-9
Identity = 58/148 (39.19%), Postives = 85/148 (57.43%), Query Frame = 0
Query:   23 SAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEV 170
            +A ++ +  A A GL+   S   +A V+ +A+S S     +H   G++R  + L   +   +     +   GG N+ G + PFE+RGFSLA  A   G  IT  S  EY  + G+ GLSG+GFVYGIPI LIGL+L+YA+L P P++ 
Sbjct:   19 TAFVAPVGQAAAGGLVASSSQQQHARVLVSARSQSSDTFHHHRAGGRRRQRLALQMQSDGPS-----QWAGGGINVSG-EAPFEIRGFSLANAAALAGLAITCASFYEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQT 160          
The following BLAST results are available for this feature:
BLAST of EWM29289.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111812|gb|EWM29289.1|2.506e-163100.00hypothetical protein Naga_100029g26 [Nannochlorops... [more]
gi|585111811|gb|EWM29288.1|2.619e-11590.10hypothetical protein Naga_100029g26 [Nannochlorops... [more]
gi|219125791|ref|XP_002183156.1|4.591e-1761.19predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|544209736|ref|XP_005535270.1|3.028e-1448.81hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1210521445|dbj|GAX19435.1|3.828e-1456.76hypothetical protein FisN_19Hh005 [Fistulifera sol... [more]
gi|1210524721|dbj|GAX16429.1|5.430e-1456.76hypothetical protein FisN_19Lh005 [Fistulifera sol... [more]
gi|1189387654|gb|OSX74706.1|1.069e-1349.32hypothetical protein BU14_0271s0001 [Porphyra umbi... [more]
gi|224000149|ref|XP_002289747.1|3.494e-1357.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072234715|gb|OEU19444.1|1.267e-1054.84hypothetical protein FRACYDRAFT_162891, partial [F... [more]
gi|298713742|emb|CBJ33716.1|1.041e-939.19conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1400rna1400Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications