EWM29289.1, cds1398 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|585111812|gb|EWM29289.1| (hypothetical protein Naga_100029g26 [Nannochloropsis gaditana]) HSP 1 Score: 458.759 bits (1179), Expect = 2.506e-163 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKVCPSPGHSFSVTDSVPQSLWMRRYPIPMSMRD 223
MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKVCPSPGHSFSVTDSVPQSLWMRRYPIPMSMRD
Sbjct: 1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKVCPSPGHSFSVTDSVPQSLWMRRYPIPMSMRD 223
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|585111811|gb|EWM29288.1| (hypothetical protein Naga_100029g26 [Nannochloropsis gaditana]) HSP 1 Score: 340.502 bits (872), Expect = 2.619e-115 Identity = 173/192 (90.10%), Postives = 177/192 (92.19%), Query Frame = 0
Query: 1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKV 192
MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVE D +QK++ K+
Sbjct: 1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADR---LFEQKSTPTIQKI 189
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|219125791|ref|XP_002183156.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405431|gb|EEC45374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 87.8113 bits (216), Expect = 4.591e-17 Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0
Query: 104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVPV 168
PFE+RGFSL + +G G LIT S AEYL SG +GL SG+GFVYGIP+ L G +L+YA++NPVPV
Sbjct: 84 PFEIRGFSLGNLVVGAGILITFASFAEYLSESGGDGLNVSGLGFVYGIPVFLAGAALKYAEINPVPV 150
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|544209736|ref|XP_005535270.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449015582|dbj|BAM78984.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 80.8777 bits (198), Expect = 3.028e-14 Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 0
Query: 103 VPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTS 186
VPFELRGFSLA V G+GAL+T+ SL Y S+GS + + +YG+PILL+GL+L YA+L PVP+ DL L+++ +
Sbjct: 81 VPFELRGFSLAKVVTGIGALLTVYSLYVYFKSAGSASETSLTLIYGMPILLLGLALWYAELEPVPIST----TDDLVVLRERKA 160
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1210521445|dbj|GAX19435.1| (hypothetical protein FisN_19Hh005 [Fistulifera solaris]) HSP 1 Score: 78.5666 bits (192), Expect = 3.828e-14 Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
Query: 95 GDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEG-LSGVGFVYGIPILLIGLSLQYAQLNPVP 167
G N G + PFE+RGFSL +G+G LITI S AEYL EG +SG+GFVYGIPI L G +L+YA++ PVP
Sbjct: 20 GVNNAG-EPPFEIRGFSLGNSVIGLGLLITIASFAEYLAQD--EGSMSGLGFVYGIPIFLAGSALKYAEIEPVP 90
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1210524721|dbj|GAX16429.1| (hypothetical protein FisN_19Lh005 [Fistulifera solaris]) HSP 1 Score: 78.1814 bits (191), Expect = 5.430e-14 Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
Query: 95 GDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEG-LSGVGFVYGIPILLIGLSLQYAQLNPVP 167
G N G + PFE+RGFSL +G+G LITI S AEYL EG +SG+GFVYGIPI L G +L+YA++ PVP
Sbjct: 20 GVNNAG-EPPFEIRGFSLGNSVIGLGLLITIASFAEYLAQD--EGSMSGLGFVYGIPIFLAGSALKYAEIEPVP 90
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1189387654|gb|OSX74706.1| (hypothetical protein BU14_0271s0001 [Porphyra umbilicalis]) HSP 1 Score: 77.7962 bits (190), Expect = 1.069e-13 Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0
Query: 96 DNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPV 168
D + ++PFE+RGFSLA V L G IT S Y S+G+ + +GFVYG+P+LLIG +L+YA+L PVP+
Sbjct: 62 DAVQEKEIPFEIRGFSLANVGLLFGFAITGYSFVTYFASNGTASATSLGFVYGVPVLLIGCALKYAELQPVPL 134
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|224000149|ref|XP_002289747.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974955|gb|EED93284.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 76.6406 bits (187), Expect = 3.494e-13 Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 0
Query: 104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVP 167
PFE+RGFSL G +T+ S AEYL SSG +GL SG+GFVYGIPI L G +L+YA+++PVP
Sbjct: 76 PFEIRGFSLGNFITIAGIAVTVLSFAEYLSSSGGDGLNVSGLGFVYGIPITLAGAALKYAEIDPVP 141
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|1072234715|gb|OEU19444.1| (hypothetical protein FRACYDRAFT_162891, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.1662 bits (165), Expect = 1.267e-10 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0
Query: 109 GFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVPV 168
GFSL + + G +IT+ S AEYL S EGL SG+GFVYGIP+ L G +L+YA++NPVP+
Sbjct: 1 GFSLGNLVILSGVVITVLSFAEYLSDSSGEGLNVSGLGFVYGIPVCLAGAALKYAEINPVPL 62
BLAST of EWM29289.1 vs. NCBI_GenBank
Match: gi|298713742|emb|CBJ33716.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 67.3958 bits (163), Expect = 1.041e-9 Identity = 58/148 (39.19%), Postives = 85/148 (57.43%), Query Frame = 0
Query: 23 SAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEV 170
+A ++ + A A GL+ S +A V+ +A+S S +H G++R + L + + + GG N+ G + PFE+RGFSLA A G IT S EY + G+ GLSG+GFVYGIPI LIGL+L+YA+L P P++
Sbjct: 19 TAFVAPVGQAAAGGLVASSSQQQHARVLVSARSQSSDTFHHHRAGGRRRQRLALQMQSDGPS-----QWAGGGINVSG-EAPFEIRGFSLANAAALAGLAITCASFYEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQT 160 The following BLAST results are available for this feature:
BLAST of EWM29289.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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