rna140, rna140 (mRNA) Nannochloropsis gaditana

Overview
Namerna140
Unique Namerna140
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3301
Alignment locationCM002455.1:364437..364862 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g83.9753.mrna
Orig protein idgnl|cribi|Naga_100013g83.9753
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:364437..364862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g83gene134Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30465.1cds140Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna140rna140-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna140 ID=rna140|Name=rna140|organism=Nannochloropsis gaditana|type=mRNA|length=3301bp
TATTACTTTATGATAGCCCACGATAGTATTGGCAATGTGGTGGTGTCTTC
GGGCTCTTCCTCTGCATGTTGAGGATTTTTCTGTATTATCTGGCATTGAA
GACAATCCCCTTCCTTTTCTGTCAGAGATTTCAGCTTTCACTCGGAACAG
ACAGCGTATGACCTCCAAATTCGTGAGCCCAGCGGCTGGTCTTTCGCAAC
AACGTCCTCAAAAAAGCGACAGCAACAAGGAGACAAGAAAAGTCGACCTA
AAGATGTTGCCGGAGGCTCCGAAGCAGGCTGGCACGTCTGCAAGCAATGA
CCGCGTCCAAAGCCACCGCGCCTGCTGCAAGCAAAAGGGAATGACGGCGA
ATCAGCCCTTGCCTTCTGCGGGCACTAAAGAGTCGAAGATGACACTCGCC
GACCTGGAATCTTTGCCTCCCTCAGAACTTGCAACTCTTCACGCACACTT
GTCGAAGAGACTAGCAGCTCAACTCAGCGCTTACGAAGAGCTGCCAAACC
CGACTGTGGTCACGACGCAAGACGAGATTGAGACCAGTGGAATCCTTTCG
TCTTCGGATACTACCTTCGCCGCTCCTGCCGCGGTTCCAAAATCCGCCCC
CAGTGTCGCACACAATGGAAACGAAGTGGTGGGGCCAGCGCCGCTTGCCG
TGTCTTCGGGCACAGCGACCACAAGCACGGCGGAAGCGTACCCGCACAGG
GACCCTGAAATCTCGCCTCCCCCCCTTGATCTCTTCGAGGCAGTAAAAAT
GGGGCTGGTGAGCGTGGTCAAGCGCCTGGTCCGCGAGCACGAGGTATCAG
ACTCACAGCAAGTCCCAGGAAACGGAGGAAGAAGACGAGCATTGTCCCCC
TCTAGCAGGCTGCGTGCCTACCTGTGGGAGCGGGACGGGGACGGGCACAC
AGTCACGCACTGGGCAGCCAAGCGCGGAGACCTCGAGTTGGTTTCCCTTC
TGGCGGACAAAGGCGCGCCGCTCTTTGAGGCGAGCACCGACAGTGTGGGG
ATGCAGCCTATCCATTGGGCGGTCACAGAGGGCCATTTGCACGTCTTGCA
CTACCTGGTGCGCAACGGCGCGGACCTGGACGCCAGAGATAAGCAGCTTT
GCACCCCTCTTTTAATTGCAGCCCAATACGGACAGACAGAAGTGGTAGCA
TACCTGGTGAAGAATGGCGCGGACACCAAGCTGTTGGACATGAACGACGA
CTCGAGCATGCACTGGGCAGCCTACAAAGGCGAGCTCTCGATCGTGCAGC
TCTTAGACCACCTGGGGCTTCCCGTGGACGACGTGGACGGGTATGGACAG
ACACCTCTCCACTTGGCGGCTCTACGGGGAAATTTCTCAGTCGTGGAGTA
CTTGGTGCTGGACGCCGACGCACGGACGGACCGCAAGGATAGGAATGGAA
GCACACCGGCCGACTTGGCTTTGAAAAAGGGGCAGAGGAAGGTGGCGGCA
TTTCTGGCCTCGCACGGTTTGGAAAAATTCAACTGGAGGCAGCTCTTGTC
CCTTCAGCATTGGAAAGTGTGGCTTCAAGGGGGAGGAAACGCAGAGGCCT
CGGCCTGGCCTTTCTACTTGGTGGTTGCAAGCAATGTGTGGGTGCTCGGG
CTCTACCCTCTCCGCTTTTTCTCCGAGCGAGGTCTCCTGGCCTTGTCGAG
CCACACCCGTTTGAACACATGCTGTGTGGCGCTGCAACTAAGCATGTGGG
CGTTCTTTCTGCTCGCCTGGCGGGTGGATCCCGGATACGTGGAAGGGAAG
AGGGAGGGCCGGAGCCAAGAATACGAGGAGGCTCTCGAAACGTTCTCCAG
CGAGGGAATGGCACGGGTCTTGGAAAAAGCTGCGGCACGATCGCAGCACC
ATCACCGACAACAAAATGGTCTCGCGCCATCCACAGCCGCAATTAAGCCC
CCTCTGCCGAACCTGTGTCATGCTTGCCATGTAGTGCGTCCCGTGCGGTC
AAAGCACTGCCGCGTCTGTCGTCGATGCGTGCAAGTCTTCGACCATCATT
GTCCCTTCATCGGCAACTGCGTAGGGGCGGGAAACTACCGGTGGTTCTTT
CTGTACGTTTGCGACCTCCTCCTGGCCGCCCTCCTGTACATTGCCACATG
TGTGATTTACCTCAAGCGTGCGGGCTTCGACATGCTCGTTTTCTTGACGC
TCCTCTACGTGCTGTCCCTCGGTCTGATGGTAGGTGCTCTGGCTGGGTAT
CATTCCCAGCTGGTTGCTCTAAATTTCACCACGAACGAGCATCAGAATTA
CTGGCGGTACGACTATTTCCGAGATCCCGTAACAGGAAGAAATCGCAATC
CTTTCGACAAAGGGGTTTGGCAGAACTTTCTAGCCCGCATTGTGTATGGA
GAGACGTACATATATGGTGGGAAAGCCCAAGCCGTTGGGAGGGGTTCGCG
TCAAAGAGAAAGGACAAGAGAGGGAGATGAAGAGGAAGAAAACTTGTTGA
CGATTGTATGAGGGCACAAAGCCAATCTAGGATACTTTCCTGATCAACAT
CGGTTGTACATATTTCAGCAGAGGTAAACAAGAGTGTCGTGAAAAGTTTA
GTCGTTCACGCGCAACAAAGTAGTAGTGGCAAATTAGCAAATACTCATGA
TTATCATCAGATTTTTGCTATCTCATTCATCGTCATAACTGCGGTGCCTG
TCGTACTTACATCCAGGCGCATTCTCATCTTCTTCTCCACAGCACCAATA
CATTTTTTGTGTGGCAAATCGATCCGCCGAAGCACTCCAATCCGCCTTGC
GTTTAGTGTCTCCTGAGTAATGCTTCGGATGATAGCGACAAGCGCGCTCG
TGGTTGCGGGAGGGATCATAGTACGTTTTGCAGTTCTTGCACAACATTTC
AGTGATAGTGCATGACTGGTGAATATCGGAGGAGCCAGACCCTAGAACTG
AAAGGTGACCTGGTGCATTTTTGACCGTGCGACTGAGAAGCCGAGAGATG
GAGAACCAGGCATGGTTTGGATGTAGTACGAGGAGGAGGATTGCGATGAT
GCGGAGGAGCGAAGCAATATTGAGACTCGAGTAATTAGTTGACACCATGG
CAATGGTTGTAACACCCTTGAAGGAGCGCCTAAATCAATTGTGCCTTTGC
CACTGGCAAAGCCACCAGGTCGTAGTACGGAAGGGGGAGGTTAATCTACA
AGTAGGATGGTTATGCCCTGCCTATCGTGATCGTAGTCTTTCGGGTGTCA
CGGCTGGTCACTTCGTATGCAACAAAAATTTGGAGGCTCCAGGCAAGAAA
TTTCGAAAAACCATTCCTGGTTATGAAAACATTTTTTGGTCGTAGTTTGC
T
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protein sequence of rna140

>rna140-protein ID=rna140-protein|Name=rna140|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MVSTNYSSLNIASLLRIIAILLLVLHPNHAWFSISRLLSRTVKNAPGHLS
VLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKR
KADWSASADRFATQKMYWCCGEEDENAPGCKYDRHRSYDDE
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mRNA from alignment at CM002455.1:364437..364862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna140 ID=rna140|Name=rna140|organism=Nannochloropsis gaditana|type=mRNA|length=426bp|location=Sequence derived from alignment at CM002455.1:364437..364862- (Nannochloropsis gaditana)
ATGGTGTCAACTAATTACTCGAGTCTCAATATTGCTTCGCTCCTCCGCAT
CATCGCAATCCTCCTCCTCGTACTACATCCAAACCATGCCTGGTTCTCCA
TCTCTCGGCTTCTCAGTCGCACGGTCAAAAATGCACCAGGTCACCTTTCA
GTTCTAGGGTCTGGCTCCTCCGATATTCACCAGTCATGCACTATCACTGA
AATGTTGTGCAAGAACTGCAAAACGTACTATGATCCCTCCCGCAACCACG
AGCGCGCTTGTCGCTATCATCCGAAGCATTACTCAGGAGACACTAAACGC
AAGGCGGATTGGAGTGCTTCGGCGGATCGATTTGCCACACAAAAAATGTA
TTGGTGCTGTGGAGAAGAAGATGAGAATGCGCCTGGATGTAAGTACGACA
GGCACCGCAGTTATGACGATGAATGA
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Coding sequence (CDS) from alignment at CM002455.1:364437..364862-

>rna140 ID=rna140|Name=rna140|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002455.1:364437..364862- (Nannochloropsis gaditana)
ATGGTGTCAACTAATTACTCGAGTCTCAATATTGCTTCGCTCCTCCGCAT
CATCGCAATCCTCCTCCTCGTACTACATCCAAACCATGCCTGGTTCTCCA
TCTCTCGGCTTCTCAGTCGCACGGTCAAAAATGCACCAGGTCACCTTTCA
GTTCTAGGGTCTGGCTCCTCCGATATTCACCAGTCATGCACTATCACTGA
AATGTTGTGCAAGAACTGCAAAACGTACTATGATCCCTCCCGCAACCACG
AGCGCGCTTGTCGCTATCATCCGAAGCATTACTCAGGAGACACTAAACGC
AAGGCGGATTGGAGTGCTTCGGCGGATCGATTTGCCACACAAAAAATGTA
TTGGTGCTGTGGAGAAGAAGATGAGAATGCGCCTGGATGTAAGTACGACA
GGCACCGCAGTTATGACGATGAATGA
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Synonyms
Publications