EWM30465.1, cds140 (CDS) Nannochloropsis gaditana

Overview
NameEWM30465.1
Unique Namecds140
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:364437..364862 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30465.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g83.9753.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:364437..364862 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Homology
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|585113129|gb|EWM30465.1| (hypothetical protein Naga_100013g83 [Nannochloropsis gaditana])

HSP 1 Score: 296.59 bits (758), Expect = 6.535e-102
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 MVSTNYSSLNIASLLRIIAILLLVLHPNHAWFSISRLLSRTVKNAPGHLSVLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQKMYWCCGEEDENAPGCKYDRHRSYDDE 141
            MVSTNYSSLNIASLLRIIAILLLVLHPNHAWFSISRLLSRTVKNAPGHLSVLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQKMYWCCGEEDENAPGCKYDRHRSYDDE
Sbjct:    1 MVSTNYSSLNIASLLRIIAILLLVLHPNHAWFSISRLLSRTVKNAPGHLSVLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQKMYWCCGEEDENAPGCKYDRHRSYDDE 141          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|950959094|ref|XP_014497380.1| (PREDICTED: uncharacterized protein LOC106758892 [Vigna radiata var. radiata])

HSP 1 Score: 81.6481 bits (200), Expect = 3.834e-17
Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 0
Query:   23 LVLHPNHAWFSISRLLSRTVKNAPGHLSVLGSGS----SDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            L+LH N   F++      T  + P + ++L   S    S ++Q  +I    CKNCKT +DPS NH  ACR+H  H+ G+TKRK +         T        YW CCG ED   PGC    H SYDD
Sbjct:   10 LLLHGNKTPFTLQ--FQCTTSSKPNNANILTYPSIRCCSSLNQKSSINLRTCKNCKTQFDPSLNHPLACRFHTAHFGGETKRKFESVYEGGTMNTPDSGKVLQYWHCCGSEDPFDPGCTSSPHASYDD 135          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|449445965|ref|XP_004140742.1| (PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus] >gi|778679751|ref|XP_011651192.1| PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus] >gi|700202296|gb|KGN57429.1| hypothetical protein Csa_3G185090 [Cucumis sativus])

HSP 1 Score: 80.1073 bits (196), Expect = 1.486e-16
Identity = 50/124 (40.32%), Postives = 66/124 (53.23%), Query Frame = 0
Query:   29 HAWFSISR--LLSRTVK---NAPGHLSVLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDDE 141
            H+ F + R   L+RT K   N+P  L++  S +S+      +T   C+NCK  +DPS NH RACR+H  H+ G+TKRK +   S     T        YW CCG ED   PGC    H SYDD+
Sbjct:   18 HSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQ----LTLRTCRNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSEDPFDPGCTASPHSSYDDD 137          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|388513505|gb|AFK44814.1| (unknown [Lotus japonicus])

HSP 1 Score: 79.7221 bits (195), Expect = 1.865e-16
Identity = 50/127 (39.37%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   24 VLHPNHAWFSISRLLSRTVKNAPGHLSVLGSGS----SDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            +LH N   F++     RT  +   + S+L   S    S ++Q  +I    CKNCKT +DP+ NH RACR+H  HY G+TKRK +         T        YW CCG ED   PGC    H SYDD
Sbjct:   10 LLHLNKIPFALQS--QRTPSSNTTYTSLLQFPSIRCCSTLNQKNSINLNTCKNCKTQFDPALNHPRACRFHTAHYGGETKRKFESVYEGGTMNTPDSGKVLQYWHCCGSEDPFDPGCTASPHSSYDD 134          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|586671398|ref|XP_006837184.1| (uncharacterized protein LOC18428080 isoform X1 [Amborella trichopoda] >gi|548839781|gb|ERN00038.1| hypothetical protein AMTR_s00105p00062390 [Amborella trichopoda])

HSP 1 Score: 79.7221 bits (195), Expect = 2.425e-16
Identity = 45/130 (34.62%), Postives = 62/130 (47.69%), Query Frame = 0
Query:   17 IIAILLLVLHPNHAWFSISRLLSRTVKNAPGHLSVLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            ++++L +V      W S S +    V N    L++                M C+ CK+ +DPSRNH RACR+H  H+ G+TKRK +        +T        YW CCG ED   PGC    H+SYDD
Sbjct:   29 LLSVLPVVTSAERPWRSCSAVRCGEVNNGAVGLNL----------------MTCRQCKSQFDPSRNHSRACRFHTAHFGGETKRKFESVHKGGTMSTPDSGRVLQYWHCCGSEDPFDPGCTAAPHQSYDD 142          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|593331552|ref|XP_007139202.1| (hypothetical protein PHAVU_008G009900g [Phaseolus vulgaris] >gi|561012335|gb|ESW11196.1| hypothetical protein PHAVU_008G009900g [Phaseolus vulgaris])

HSP 1 Score: 78.9518 bits (193), Expect = 3.759e-16
Identity = 48/125 (38.40%), Postives = 65/125 (52.00%), Query Frame = 0
Query:   23 LVLHPNHAWFSI-SRLLSRTVKNAPGHLSVLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            L+LH N   F++ S+ +  +  N   + S+     S ++Q  +I+   CKNCKT +DPS NH  ACR+H  H+ G+TKRK +         T        YW CCG ED   PGC    H SYDD
Sbjct:    9 LLLHGNKMPFTVQSQCIISSNPNIFTYPSI--RCCSSLNQKSSISHRTCKNCKTQFDPSLNHPLACRFHTAHFGGETKRKFESVYEGGTMNTPDSGKVFQYWHCCGSEDPFDPGCTSSPHTSYDD 131          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|566171413|ref|XP_006383359.1| (hypothetical protein POPTR_0005s14830g [Populus trichocarpa] >gi|550338968|gb|ERP61156.1| hypothetical protein POPTR_0005s14830g [Populus trichocarpa])

HSP 1 Score: 78.9518 bits (193), Expect = 3.883e-16
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 0
Query:   59 IHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            I+Q+   T   CKNCKT +DPS NH RACR+H  H+ G+TKRK +   +    +T        YW CCG ED   PGC    H SYDD
Sbjct:   44 INQNNNKTLRTCKNCKTQFDPSLNHPRACRFHTSHFGGETKRKFESVYTGGTMSTPDSGQVFQYWHCCGSEDPFDPGCTAAPHSSYDD 131          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|743821144|ref|XP_011021338.1| (PREDICTED: uncharacterized protein LOC105123443 [Populus euphratica])

HSP 1 Score: 78.5666 bits (192), Expect = 5.976e-16
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 0
Query:   59 IHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            I+Q+   T   CKNCKT +DPS NH RACR+H  H+ G+TKRK +   +     T        YW CCG ED   PGC    H SYDD
Sbjct:   44 INQNSNRTLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVYTGGTMNTPDSGQVFQYWHCCGSEDPFDPGCTAAPHSSYDD 131          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|1098821294|ref|XP_018816863.1| (PREDICTED: uncharacterized protein LOC108988171 [Juglans regia] >gi|1098821296|ref|XP_018816864.1| PREDICTED: uncharacterized protein LOC108988171 [Juglans regia])

HSP 1 Score: 78.1814 bits (191), Expect = 9.301e-16
Identity = 52/139 (37.41%), Postives = 66/139 (47.48%), Query Frame = 0
Query:   12 ASLLRIIAILLLVLH--PNHAWFSISRLLSRTVKN--APGHLSVLGSGSSDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            A+L    A  LL  H  P  A  ++    S T K+  +P     +   +    Q   IT   CKNCKT +DP+ NH RACR+H  H+ G+TKRK +   +     T        YW CCG ED   PGC    H SYDD
Sbjct:    3 AALSHSQARFLLFFHQNPPVAPQTLRLQTSETQKSTYSPPRFRAVRCSAKPNEQ---ITLRTCKNCKTQFDPALNHPRACRFHTAHFGGETKRKFESVYTGGTMDTPNSGKVVQYWHCCGSEDPFDPGCTASPHSSYDD 138          
BLAST of EWM30465.1 vs. NCBI_GenBank
Match: gi|1044528787|ref|XP_017408960.1| (PREDICTED: uncharacterized protein LOC108321652 [Vigna angularis] >gi|920681766|gb|KOM28546.1| hypothetical protein LR48_Vigan549s010100 [Vigna angularis] >gi|965668417|dbj|BAT83024.1| hypothetical protein VIGAN_04011900 [Vigna angularis var. angularis])

HSP 1 Score: 77.0258 bits (188), Expect = 2.198e-15
Identity = 40/90 (44.44%), Postives = 48/90 (53.33%), Query Frame = 0
Query:   57 SDIHQSCTITEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQK-----MYW-CCGEEDENAPGCKYDRHRSYDD 140
            S ++Q  +I    CKNCKT +DPS NH  ACR+H  H+ G+TKRK +         T        YW CCG ED   PGC    H SYDD
Sbjct:   45 SSLNQKSSINLRTCKNCKTQFDPSLNHPLACRFHTAHFGGETKRKFESVYEGGTMNTPDSGKVLQYWHCCGSEDPFDPGCTSSPHASYDD 134          
The following BLAST results are available for this feature:
BLAST of EWM30465.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113129|gb|EWM30465.1|6.535e-102100.00hypothetical protein Naga_100013g83 [Nannochlorops... [more]
gi|950959094|ref|XP_014497380.1|3.834e-1738.28PREDICTED: uncharacterized protein LOC106758892 [V... [more]
gi|449445965|ref|XP_004140742.1|1.486e-1640.32PREDICTED: uncharacterized protein LOC101208221 [C... [more]
gi|388513505|gb|AFK44814.1|1.865e-1639.37unknown [Lotus japonicus][more]
gi|586671398|ref|XP_006837184.1|2.425e-1634.62uncharacterized protein LOC18428080 isoform X1 [Am... [more]
gi|593331552|ref|XP_007139202.1|3.759e-1638.40hypothetical protein PHAVU_008G009900g [Phaseolus ... [more]
gi|566171413|ref|XP_006383359.1|3.883e-1646.59hypothetical protein POPTR_0005s14830g [Populus tr... [more]
gi|743821144|ref|XP_011021338.1|5.976e-1646.59PREDICTED: uncharacterized protein LOC105123443 [P... [more]
gi|1098821294|ref|XP_018816863.1|9.301e-1637.41PREDICTED: uncharacterized protein LOC108988171 [J... [more]
gi|1044528787|ref|XP_017408960.1|2.198e-1544.44PREDICTED: uncharacterized protein LOC108321652 [V... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna140rna140Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications