rna14, rna14 (mRNA) Nannochloropsis gaditana

Overview
Namerna14
Unique Namerna14
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1167
Alignment locationCM002455.1:38859..40238 -

Link to JBrowse

Properties
Property NameValue
Productalanine-glyoxylate aminotransferase
Orig transcript idgnl|cribi|Naga_100091g3.5720.mrna
Orig protein idgnl|cribi|Naga_100091g3.5720
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:38859..40238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100091g3gene13Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna14rna14-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30671.1cds14Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna14 ID=rna14|Name=rna14|organism=Nannochloropsis gaditana|type=mRNA|length=1167bp
ATGAAGGTAATCCAGGTATGTCATCTACATTCATCAATGGCAGGTTCAGA
AGCAAATGACTTGGCTTTGGCATTGGCACGGGCCTACACTGGACACGAGG
ACGCTGTAGTCCTGGACTCCGCCTACCACGGTCACACCACCACGATGATC
GATATGTCCCCGTACAAGCACAAGGGAGCGCGTCCGGCCTCCCACCTCAA
CTCTGCTGCAGCGAAGGAGGGCCAAGAATTGAAAGAGATACCAGACGGAC
AGTTCCCATTGCCAAGACATTCCACCCCATGTCTCCCCTCCTCCAAGGAC
TGGGTTCACGTGGTCCCAGTGCCGGACACCTACCGCGGTCGCTTTTCGAC
GGCCGCCGACTATGTGAACCACAGCATGGCTCTCCTCGACACGAGCACTG
CATCGGCTTCGCATGATCTCACGGCACCGAATTCCCTTTCTAATCGTGGT
GTTCGAAAAATTGCGGCTTTTTGTGCCGAAAGCGTCCTCGCCTGCGGTGG
ACAGGTGGTTCTTCCTCCTGGCTACCTGAGTGGAATGTACGAATACATCC
ACAGCAAAGGTGGCCTCTGTGTCGCTGACGAGGTTCAAACAGGATTTGGC
CGGAGCGGAAGTCACATGTGGGCATTCCAGTCGCAAGACGTTGTACCTGA
CATCGTCACGCTTGGTAAGCCTATCGCCAATGGTTTCCCACTTGCCGCTG
TAATCACCCGAAAAGAGATTGCCGAGTCTCTGCCTATATCGTATTTCAAC
ACATTCGGAGGGAGCAATCTGGCTGTGGCTCTGGGCGAGGCTACTTTAGA
TGTGATACTCGGTGACAATCTGCAAGAGAAGGCTGCGCGGTTGGGTGCGT
TGTTGAAAAATCTATTTGAAAGCCTTAAGAAGAAACATTCCCTTGTAGGG
GATGTCCGAGGGTTGGGGATGATGCTGGGCGTAGAGCTCGTTGAGGATAG
GGAGACCAAAGCACCTGCACCGGCAGCAGCTGCTTACGTGCTAGAGCGTG
CGCGGCAGATGGGAGTGCACATACAGGTTGATGGGAAATGGGAAAATGTC
CTGAAAATGAAACCACCCCTTGCCTTTATGGAGGAGGACGCCCAAACTCT
CGTCAAGACCATCGATATAGCGCTGGCCGAATACGCGCAGAGGATGGGGG
AAATGAATGGTGAATAG
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protein sequence of rna14

>rna14-protein ID=rna14-protein|Name=rna14|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MDTDARYGCDPFFVKLHVRILSCMKSKTNQMEVCGSMLLPMELCVPSPEF
PPTLIFMLLAFGTILFSLAMWTSLALAWKRGDFKAKPPLSSSCSCHELER
PQDPWKDRNENEMRRVRSEHMFSKLTLFYQDGSVAHGALEETKQEEIDDR
SLCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAINK
YALPPSRKVSLRQETPETIYTNTGYCFLCE
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mRNA from alignment at CM002455.1:38859..40238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna14 ID=rna14|Name=rna14|organism=Nannochloropsis gaditana|type=mRNA|length=1380bp|location=Sequence derived from alignment at CM002455.1:38859..40238- (Nannochloropsis gaditana)
ATGGACACAGATGCTAGGTATGGCTGTGACCCTTTTTTCGTAAAACTACA
CGTTCGCATATTAAGTTGTATGAAGAGTAAAACTAACCAAATGGAAGGTG
GCACCTTCAATCAATAATCGAGATAGCGATATTCACATCAAAGAAAGAAG
CAACTTGATGGTTACTTTATGCGCAGCCAACCTAGTAGCCGGTCGGGCCA
TTGGCTGACTCCCTCCAGCGTGCTTCAACAAAATGCAATATAATTGTTTC
TTGATATGATTATCAATCTTGGTCCGTCGACTCTGCGCAAAAGTTTGCTC
CGCGCGTGTCGAAAACCTGTCCAGGGCACTTATCGCACGTGTCGCTAATT
CTGGTTCAAGAATCTTGAGCGCTTTCCCTCCCACGTACCCTCCCGAATCC
CCCCATCAAACCTCAAAACCTTACTGTCTATTTGGTCCATGGAATCGTAC
GCATCAGGCCTTTTCTAATAACTATTGTTTGCAGTAATTCTCAGACATTC
GATCCGCTCGCATCGCAGGGGAAGAAGCCAGGGGCCTATTCGCATCTGCG
TGCAAAGTTTCACTTCAGTTTGTGGGTCAATGCTTTTGCCAATGGAATTG
TGCGTTCCGAGCCCAGAATTCCCACCTACCTTGATTTTTATGCTGTTGGC
GTTCGGTACAATACTTTTCTCGCTTGCAATGTGGACTTCTTTGGCATTGG
CATGGAAAAGGGGGGACTTCAAAGCAAAACCTCCCCTCTCTTCGTCGTGT
TCCTGTCACGAACTTGAACGCCCTCAGGATCCATGGAAAGACAGAAATGA
GAATGAAATGCGACGCGTGCGGTCGGAGCATATGTTCAGTAAGCTGACCT
TGTTCTATCAAGATGGCAGTGTGGCCCATGGAGCTTTAGAAGAGACAAAG
CAGGAGGAGATCGACGATCGATCTCTCTGTCTCTTGCGGGGCCAGGGTCA
ATTTGTCTTTGATTCACGAGGAAAGCGGTATGTAATGATAATAGACTAGA
AAGCCTGTAGGAAATTTTCTGTGCTCACGCCGAGGTTTGAACTTTGTGTC
TTCAGGTACCTTGACTGTGTCAACAACGTCGCCCACATTGGCCATTCGCA
TCCAGCCCTTGCCAAGGCTGCTCTGCTTCAACTTCAGGCAATAAACAAAT
ACGCGGTAAGTTAGCTGTAGGTCTCTATTTTCTTCTCTCTTCTTCCTGTC
TTTCTTCCGTTGTGCATGTGTCTTGTTCAGGCGCATTACCTCGCAATTCC
GCAAAGCCCCGCGATTGAGGGCATCATCTTGTCTCTTCTCCAGTTACCGC
CATCCAGGAAGGTCTCGCTACGTCAAGAAACTCCTGAGACTATTTACACC
AACACTGGATACTGTTTTCTTTGTGAATAG
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Coding sequence (CDS) from alignment at CM002455.1:38859..40238-

>rna14 ID=rna14|Name=rna14|organism=Nannochloropsis gaditana|type=CDS|length=2772bp|location=Sequence derived from alignment at CM002455.1:38859..40238- (Nannochloropsis gaditana)
TTACCGCCATCCAGGAAGGTCTCGCTACGTCAAGAAACTCCTGAGACTAT
TTACACCAACACTGGATACTGTTTTCTTTGTGAATAGGTACCTTGACTGT
GTCAACAACGTCGCCCACATTGGCCATTCGCATCCAGCCCTTGCCAAGGC
TGCTCTGCTTCAACTTCAGGCAATAAACAAATACGCGTTTGTGGGTCAAT
GCTTTTGCCAATGGAATTGTGCGTTCCGAGCCCAGAATTCCCACCTACCT
TGATTTTTATGCTGTTGGCGTTCGGTACAATACTTTTCTCGCTTGCAATG
TGGACTTCTTTGGCATTGGCATGGAAAAGGGGGGACTTCAAAGCAAAACC
TCCCCTCTCTTCGTCGTGTTCCTGTCACGAACTTGAACGCCCTCAGGATC
CATGGAAAGACAGAAATGAGAATGAAATGCGACGCGTGCGGTCGGAGCAT
ATGTTCAGTAAGCTGACCTTGTTCTATCAAGATGGCAGTGTGGCCCATGG
AGCTTTAGAAGAGACAAAGCAGGAGGAGATCGACGATCGATCTCTCTGTC
TCTTGCGGGGCCAGGGTCAATTTGTCTTTGATTCACGAGGAAAGCGATGG
ACACAGATGCTAGGTATGGCTGTGACCCTTTTTTCGTAAAACTACACGTT
CGCATATTAAGTTGTATGAAGAGTAAAACTAACCAAATGGAAGTTACCGC
CATCCAGGAAGGTCTCGCTACGTCAAGAAACTCCTGAGACTATTTACACC
AACACTGGATACTGTTTTCTTTGTGAATAGGTACCTTGACTGTGTCAACA
ACGTCGCCCACATTGGCCATTCGCATCCAGCCCTTGCCAAGGCTGCTCTG
CTTCAACTTCAGGCAATAAACAAATACGCGTTTGTGGGTCAATGCTTTTG
CCAATGGAATTGTGCGTTCCGAGCCCAGAATTCCCACCTACCTTGATTTT
TATGCTGTTGGCGTTCGGTACAATACTTTTCTCGCTTGCAATGTGGACTT
CTTTGGCATTGGCATGGAAAAGGGGGGACTTCAAAGCAAAACCTCCCCTC
TCTTCGTCGTGTTCCTGTCACGAACTTGAACGCCCTCAGGATCCATGGAA
AGACAGAAATGAGAATGAAATGCGACGCGTGCGGTCGGAGCATATGTTCA
GTAAGCTGACCTTGTTCTATCAAGATGGCAGTGTGGCCCATGGAGCTTTA
GAAGAGACAAAGCAGGAGGAGATCGACGATCGATCTCTCTGTCTCTTGCG
GGGCCAGGGTCAATTTGTCTTTGATTCACGAGGAAAGCGATGGACACAGA
TGCTAGGTATGGCTGTGACCCTTTTTTCGTAAAACTACACGTTCGCATAT
TAAGTTGTATGAAGAGTAAAACTAACCAAATGGAAGTTACCGCCATCCAG
GAAGGTCTCGCTACGTCAAGAAACTCCTGAGACTATTTACACCAACACTG
GATACTGTTTTCTTTGTGAATAGGTACCTTGACTGTGTCAACAACGTCGC
CCACATTGGCCATTCGCATCCAGCCCTTGCCAAGGCTGCTCTGCTTCAAC
TTCAGGCAATAAACAAATACGCGTTTGTGGGTCAATGCTTTTGCCAATGG
AATTGTGCGTTCCGAGCCCAGAATTCCCACCTACCTTGATTTTTATGCTG
TTGGCGTTCGGTACAATACTTTTCTCGCTTGCAATGTGGACTTCTTTGGC
ATTGGCATGGAAAAGGGGGGACTTCAAAGCAAAACCTCCCCTCTCTTCGT
CGTGTTCCTGTCACGAACTTGAACGCCCTCAGGATCCATGGAAAGACAGA
AATGAGAATGAAATGCGACGCGTGCGGTCGGAGCATATGTTCAGTAAGCT
GACCTTGTTCTATCAAGATGGCAGTGTGGCCCATGGAGCTTTAGAAGAGA
CAAAGCAGGAGGAGATCGACGATCGATCTCTCTGTCTCTTGCGGGGCCAG
GGTCAATTTGTCTTTGATTCACGAGGAAAGCGATGGACACAGATGCTAGG
TATGGCTGTGACCCTTTTTTCGTAAAACTACACGTTCGCATATTAAGTTG
TATGAAGAGTAAAACTAACCAAATGGAAGTTACCGCCATCCAGGAAGGTC
TCGCTACGTCAAGAAACTCCTGAGACTATTTACACCAACACTGGATACTG
TTTTCTTTGTGAATAGGTACCTTGACTGTGTCAACAACGTCGCCCACATT
GGCCATTCGCATCCAGCCCTTGCCAAGGCTGCTCTGCTTCAACTTCAGGC
AATAAACAAATACGCGTTTGTGGGTCAATGCTTTTGCCAATGGAATTGTG
CGTTCCGAGCCCAGAATTCCCACCTACCTTGATTTTTATGCTGTTGGCGT
TCGGTACAATACTTTTCTCGCTTGCAATGTGGACTTCTTTGGCATTGGCA
TGGAAAAGGGGGGACTTCAAAGCAAAACCTCCCCTCTCTTCGTCGTGTTC
CTGTCACGAACTTGAACGCCCTCAGGATCCATGGAAAGACAGAAATGAGA
ATGAAATGCGACGCGTGCGGTCGGAGCATATGTTCAGTAAGCTGACCTTG
TTCTATCAAGATGGCAGTGTGGCCCATGGAGCTTTAGAAGAGACAAAGCA
GGAGGAGATCGACGATCGATCTCTCTGTCTCTTGCGGGGCCAGGGTCAAT
TTGTCTTTGATTCACGAGGAAAGCGATGGACACAGATGCTAGGTATGGCT
GTGACCCTTTTTTCGTAAAACTACACGTTCGCATATTAAGTTGTATGAAG
AGTAAAACTAACCAAATGGAAG
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Synonyms
Publications