EWM30671.1, cds14 (CDS) Nannochloropsis gaditana

Overview
NameEWM30671.1
Unique Namecds14
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:40142..40238 -
Alignment locationCM002455.1:39262..39670 -
Alignment locationCM002455.1:39084..39183 -
Alignment locationCM002455.1:38859..38945 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30671.1
Productalanine-glyoxylate aminotransferase
Orig transcript idgnl|cribi|Naga_100091g3.5720.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:40142..40238 -
CM002455.1supercontigCM002455.1:39262..39670 -
CM002455.1supercontigCM002455.1:39084..39183 -
CM002455.1supercontigCM002455.1:38859..38945 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0003824catalytic activity
GO:0008483transaminase activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR015422PyrdxlP-dep_Trfase_major_sub2
IPR005814Aminotrans_3
Homology
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|585113367|gb|EWM30671.1| (alanine-glyoxylate aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 483.797 bits (1244), Expect = 5.209e-173
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query:    1 MDTDARYGCDPFFVKLHVRILSCMKSKTNQMEVCGSMLLPMELCVPSPEFPPTLIFMLLAFGTILFSLAMWTSLALAWKRGDFKAKPPLSSSCSCHELERPQDPWKDRNENEMRRVRSEHMFSKLTLFYQDGSVAHGALEETKQEEIDDRSLCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAINKYALPPSRKVSLRQETPETIYTNTGYCFLCE 230
            MDTDARYGCDPFFVKLHVRILSCMKSKTNQMEVCGSMLLPMELCVPSPEFPPTLIFMLLAFGTILFSLAMWTSLALAWKRGDFKAKPPLSSSCSCHELERPQDPWKDRNENEMRRVRSEHMFSKLTLFYQDGSVAHGALEETKQEEIDDRSLCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAINKYALPPSRKVSLRQETPETIYTNTGYCFLCE
Sbjct:    1 MDTDARYGCDPFFVKLHVRILSCMKSKTNQMEVCGSMLLPMELCVPSPEFPPTLIFMLLAFGTILFSLAMWTSLALAWKRGDFKAKPPLSSSCSCHELERPQDPWKDRNENEMRRVRSEHMFSKLTLFYQDGSVAHGALEETKQEEIDDRSLCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAINKYALPPSRKVSLRQETPETIYTNTGYCFLCE 230          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|823477013|ref|XP_012431582.1| (PREDICTED: ethanolamine-phosphate phospho-lyase-like, partial [Taeniopygia guttata])

HSP 1 Score: 70.8626 bits (172), Expect = 3.213e-12
Identity = 27/48 (56.25%), Postives = 40/48 (83.33%), Query Frame = 0
Query:  152 LCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            L ++R QGQ++FD +G++YLDC+NNVAH+GHSHP + KAA  Q++ +N
Sbjct:   12 LKIVRAQGQYMFDEKGEKYLDCINNVAHVGHSHPYVIKAATKQMELLN 59          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|704566698|ref|XP_010184152.1| (PREDICTED: ethanolamine-phosphate phospho-lyase [Mesitornis unicolor] >gi|677439852|gb|KFQ37049.1| Ethanolamine-phosphate phospho-lyase [Mesitornis unicolor])

HSP 1 Score: 74.3294 bits (181), Expect = 7.196e-12
Identity = 28/48 (58.33%), Postives = 42/48 (87.50%), Query Frame = 0
Query:  152 LCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            L ++R QGQ++FD +G++YLDC+NNVAH+GHSHP +AKAA+ Q++ +N
Sbjct:   31 LKIVRAQGQYMFDEKGEKYLDCINNVAHVGHSHPYVAKAAIKQMELLN 78          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|768351727|ref|XP_011572784.1| (PREDICTED: ethanolamine-phosphate phospho-lyase [Aquila chrysaetos canadensis])

HSP 1 Score: 73.9442 bits (180), Expect = 1.145e-11
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 0
Query:  152 LCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            L ++RGQGQ++FD +G++YLDC+NNVAH+GHSHP + KAA  Q++ +N
Sbjct:   31 LKIVRGQGQYMFDDKGEKYLDCINNVAHVGHSHPYVIKAATKQMELLN 78          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|960947744|ref|XP_014796596.1| (PREDICTED: ethanolamine-phosphate phospho-lyase [Calidris pugnax])

HSP 1 Score: 72.7886 bits (177), Expect = 2.633e-11
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 0
Query:  152 LCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            L ++R QGQ++FD +G+RYLDC+NNVAH+GHSHP + KAA  Q++ +N
Sbjct:   31 LKIVRAQGQYMFDEKGERYLDCINNVAHVGHSHPYVIKAATKQMELLN 78          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|195167080|ref|XP_002024362.1| (GL14845 [Drosophila persimilis] >gi|194107735|gb|EDW29778.1| GL14845 [Drosophila persimilis])

HSP 1 Score: 70.0922 bits (170), Expect = 2.721e-11
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0
Query:  109 NENEMRRVRSEHMFSKLTLFYQDGSVAHGALEETKQEEIDDRSLCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            ++ E  ++R++H+     LFY+                     L ++RGQGQ++FD  G RYLDC+NNVAH+GH HP + +A  LQ+  I+
Sbjct:   19 SKTETIKLRNKHIGQACQLFYRSDP------------------LKIVRGQGQYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGALQMATIS 91          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|676710515|gb|KFO86146.1| (Ethanolamine-phosphate phospho-lyase, partial [Buceros rhinoceros silvestris])

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-11
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 0
Query:  152 LCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            L ++R QGQ++FD +G+RYLDC+NNVAH+GHSHP + KAA  Q++ +N
Sbjct:   12 LKIVRAQGQYMFDEKGERYLDCINNVAHVGHSHPDVIKAATKQMELLN 59          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|755891250|ref|XP_011294903.1| (PREDICTED: alanine--glyoxylate aminotransferase 2-like, partial [Musca domestica])

HSP 1 Score: 67.3958 bits (163), Expect = 3.509e-11
Identity = 31/90 (34.44%), Postives = 51/90 (56.67%), Query Frame = 0
Query:  110 ENEMRRVRSEHMFSKLTLFYQDGSVAHGALEETKQEEIDDRSLCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            ++E  ++R++H+     LFY+   +                   ++RGQGQ++FD +G  YLDC+NNVAH+GH HP + +A  LQ+  I+
Sbjct:   18 KSETIKLRNKHIGQACQLFYRSDPLK------------------IVRGQGQYMFDEQGTCYLDCINNVAHVGHCHPKVVRAGCLQMATIS 89          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|529436670|ref|XP_005238100.1| (PREDICTED: ethanolamine-phosphate phospho-lyase [Falco peregrinus])

HSP 1 Score: 72.4034 bits (176), Expect = 3.772e-11
Identity = 27/48 (56.25%), Postives = 40/48 (83.33%), Query Frame = 0
Query:  152 LCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            L ++R QGQ++FD +G++YLDC+NNVAH+GHSHP + KAA  Q++ +N
Sbjct:   31 LKIVRAQGQYMFDEKGEKYLDCINNVAHVGHSHPEVTKAATKQMELLN 78          
BLAST of EWM30671.1 vs. NCBI_GenBank
Match: gi|1190413851|ref|XP_020857089.1| (ethanolamine-phosphate phospho-lyase isoform X2 [Phascolarctos cinereus])

HSP 1 Score: 72.4034 bits (176), Expect = 3.823e-11
Identity = 27/48 (56.25%), Postives = 40/48 (83.33%), Query Frame = 0
Query:  152 LCLLRGQGQFVFDSRGKRYLDCVNNVAHIGHSHPALAKAALLQLQAIN 199
            L ++RG+GQ++FD  GK+YLDC+NNVAH+GHSHP + K A+ Q++ +N
Sbjct:   31 LKIVRGKGQYMFDENGKQYLDCINNVAHVGHSHPEVIKVAVEQMELLN 78          
The following BLAST results are available for this feature:
BLAST of EWM30671.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113367|gb|EWM30671.1|5.209e-173100.00alanine-glyoxylate aminotransferase [Nannochlorops... [more]
gi|823477013|ref|XP_012431582.1|3.213e-1256.25PREDICTED: ethanolamine-phosphate phospho-lyase-li... [more]
gi|704566698|ref|XP_010184152.1|7.196e-1258.33PREDICTED: ethanolamine-phosphate phospho-lyase [M... [more]
gi|768351727|ref|XP_011572784.1|1.145e-1158.33PREDICTED: ethanolamine-phosphate phospho-lyase [A... [more]
gi|960947744|ref|XP_014796596.1|2.633e-1158.33PREDICTED: ethanolamine-phosphate phospho-lyase [C... [more]
gi|195167080|ref|XP_002024362.1|2.721e-1136.26GL14845 [Drosophila persimilis] >gi|194107735|gb|E... [more]
gi|676710515|gb|KFO86146.1|3.363e-1158.33Ethanolamine-phosphate phospho-lyase, partial [Buc... [more]
gi|755891250|ref|XP_011294903.1|3.509e-1134.44PREDICTED: alanine--glyoxylate aminotransferase 2-... [more]
gi|529436670|ref|XP_005238100.1|3.772e-1156.25PREDICTED: ethanolamine-phosphate phospho-lyase [F... [more]
gi|1190413851|ref|XP_020857089.1|3.823e-1156.25ethanolamine-phosphate phospho-lyase isoform X2 [P... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna14rna14Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications