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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100029g26.9545.mrna |
| Orig protein id | gnl|cribi|Naga_100029g26.9545 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:547021..549370 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1399 ID=rna1399|Name=rna1399|organism=Nannochloropsis gaditana|type=mRNA|length=2755bp
GGAACCAGGCTGGGGAGGTTGACTGCTTCCTTTAGCAGGGCAGCAACGTA
CTCGTGTTCCCTCTACTGGCTAGCAGCAGCCACTCACTTGCATCGCATAA
ATGCGGTACACACTACGAGAAGGGCAACGTCAGATGCAGTCAATTGTGGA
ACATGAGCGTAGAGATTGCTGAGGAAAGACTGTTGCAATTTCGTCTGTAT
CACCAGTCGTCATTTAAACGAGGACCTTGACTCCTGATCACCGACGGGAT
GGCACTCTGCTATGTGCTTGAAATGAGGTTGTTGAGCAAGACAGATTCGG
AGAGTGTCCAGATTTTGATGACAAGGCCTTATGTGATAGCAATGTGGGTG
GTTGCCATTTACTTGTTACCTGTCTGCTTTGTTTTTTAAATTTTTACTCT
TGACAAACGCCGCCGCAATAACACCCCCTTCTCGTGTCGGCGCGTATTGT
TGCTCACAGAGAATGCGCGGCCATGATGACTTACTTCCTCACTTTAATTG
GATAGAAGAATGGGAAGGGAAGGTATTACTGATTTTTGCGTTGGAAGGTG
TGAGATATTGCCAAGAAATAGGATTTTCAGACGATCATTCTGCGAGCCTC
ATCTTTGCCCTCGCTCCTGCACCTGCTTTCACGTGTACAAAGCCGAGCAT
TGACGATATGTTTTGGGTCCATCACAACAAGGTAGGCTGACAGTCCATCT
TGTTGCTCCCTGGTCATGGCGGACGAGGAAACACCTTTGCGACCTGCCAT
CTCGACCTCAGCCGGGACGTCGTCGAGCACCGCCAGCACCGCGGGAACGA
CTCCCATTCGTCGACCATCATTCCTACTCTCTAAACTCCCGCCCCCACCA
CCGCTGGAACCTGAAACCGCGGCGAAGAAGACAAGCAAAGCAGTGAAACT
AGCGATCTATGTTTTCGCCTCGACCTTCACCGCTGCCGCTAACGCTGTAT
GGTTCAAAAAGATGCTCAATGCATATCGCCCCAACTTTGAGTTTTTCGGA
AACCAGTTTAATGTATTTCTCTATGTCTTGCTGGCGGCTCTAGTCGTGCT
TCATAAGCGGGTGCGATATGGGGCCCACTGGTGGCACAAGCAGGACCTTC
CCCTCAGCGTGCTCTGCTTCATGGGTTTCCTGGACGCGACCGGCTCCATC
CTGTCCACCATGGGAGGCGCATACACTGCCGGCGCCGTGCAGACCCTTCT
CAACCAGGTGATAATTCCCATGACACTGGCACTCTCTTTTCTCTGCCTCG
GTCAGCGCTTCACGGGCGCGCAGACTCTTGGCGCGTTGACCATTTTCATT
GGCGCTGGGATAGCCATAGTTCCTTCGTTTTTGGCCGGAAAAGGGGCCCG
CGCAGGCAGTGGTAGCGGTGAAGGACCGCCGACGACCACGCTTACTGGCG
TCCTTCTTTTCTTCTCCAGCATCTTACCGGGCGCGTTCTCGAACGTCTAC
AAAGAATGGGGTTTTGCGCAATTTCACGTCGACCTCTACTATTTGACAAC
CTTTGTCTCGGCCATCCAAGTCCTCTTTGGTTTCGCCTTCTTGCCTGCGC
TTCAAGTCCCTATATTTGGCGGCATGCCTCTCCGTGAAATCCCTCAGCAG
TTCACACTTGGTTTTAAGTGTTTCCGAGGTATCAACACCCTGCCCGGCGA
CGACTGCAAGGACGCTTTCTTGACTATGTGGATGTACGTCTTGATTAACT
TTCTATTCAACGTCCTTCAGTTGCTCATCACCAAACACGGAGGGGCAACC
CTCCTGGTAATTTCCGCCGCCTTGGCTTTGCCTGTGACCAACTTCGCCTT
CAGCATGACGTGGATCATGGGTGAGGACACCGAGCCCTTCAACCCCTTCG
ACGCAGTGGCGCTGGCCGTGGTCCTGGTCGGTTTTCTTCTCTATAGCGCC
TGGGACGACCTTGTTGACCGGCGCAAAAAGCAGCGAAAACGCTTGCCCAT
ACAATTTGCGGCGGGGTCGGTCATGTATCTGCGGGAGCGGGCCGACTCCG
ATCCCTCTACGCCTGGCTACACGCCGATACGAGTCGAGCCCCCTAGGCGC
CGGGGTAGCATAGACGTCCAGCTGAACCGTGCCCCGCACCCTGACGGCAC
CAACAAGGGCATCAGTGCCTCGACGCGGCTTCTAGCTCCGTCAAAGGCTG
TTCCCATCCTCTTACAGCAGAAACAGCAACGGCGACGTGAAGAGGCTGGC
GGGGGGTTGGCACCAGGGAGGCCGAGCTCGTACCAGATAGATATAGTGAG
CGACGAGGTCGGAACTGTTAGTCTGTAGTCGTAGGACTAGCAAAAAAGAA
AACCGCGCTGGCGGAAGCGAACAGCTTGATAAGGCGCGAAGTAAGGAGTA
TGCTTTCCGGGGCGAGCCAGGGAAGGCGTAAGGGAGGAGAAAATGTTACA
AAGTGTAAGTAGGGTCAGTCGCGTGATTGGATACACCTGGCGAAAGACTG
GCGCAATGTACAGAAAAGCACTTTAAAAAGTACCATTGTATGTGAGGCAT
GAATGACATCAGAGTTGTAATGAGACCGTGTGCGAATGTCAACCAGACCG
AGAAGTGTCCTCCGCTGGCGGAGGTGTTGGCCGGAAAACGGGCAGAAAGA
AACAAGGGAGTCGGCAGTAAGAAATTAGTATGATACAGGCTCATCGTGGA
TCACACGCCGACAAGGACCATGCATTCCTCATTCTCCACCAGGAAATCTT
CGCGACGAGAAGAGGCATAAGAAATGAAACAAAGCACGACACGTACTGGA
CAAGT back to topprotein sequence of rna1399 >rna1399-protein ID=rna1399-protein|Name=rna1399|organism=Nannochloropsis gaditana|type=polypeptide|length=313bp
MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVI
PAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVG
TDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIP
ILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGD
DAHLDTTVQALGLVMPNKEFPQLQYLTQGVENGELAFSMVFKSDDTPYRL
WVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPASAQASRP
EGESAAPAEPASA back to topmRNA from alignment at CM002457.1:547021..549370- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1399 ID=rna1399|Name=rna1399|organism=Nannochloropsis gaditana|type=mRNA|length=2350bp|location=Sequence derived from alignment at CM002457.1:547021..549370- (Nannochloropsis gaditana)
AGGGAGCTGAGATCCGGCGCTTCCGAACCAGGACGTGAGTGCTTAAGCGT
GCCAACACGTTCCAAAGGCCTTGGGGTCCATGATTTATGTGCATCATTTT
AATTCCACACGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGC
AATCATGTCCACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCA
TTTCGACCATCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGC
CTTGTCAATAGGCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCAT
TAATTTGGATAAGCTGGCTAAGACCAGGTAAGGCTTGTTACGAATGAGGA
CGTGGCATGTATGACGTTGACGGGGTCAGACCATCTCCATTTGCCAGGGG
AAAGAAGGATGTAAGATTGCATAGTAGGAGGAGAATGTTGCGCCTGTATA
TTGGCTCCAACACACTAGGCTATGTCGGGCAGCTCTCTATGGAGGTAACA
CTAACACCTTGTGTACGGAGAACACGTCGATAAGTCCTTCGTGGGACGTC
AGTTAAATCGGCGCATCGGATGCTACATAAACGAGATTGGGGAAAGAGGA
GCATTGCAGCGATGTTTATGTATCTGTGCCCTTTGAAAGTTATGTTTGCC
ACACATTTGTCGTCTGAGAAGAAGATGGGGGCATGTCTCAACCAAGCGCC
CAGGTCTAACCTTCGGATTACCCACCATCCTCACAGAGCCTTGACAGTAT
TACGCGAGTCTCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCT
TTTGAGCTGCGTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGC
CCTTATCACTATTGGAAGTCTGGCAGAGGTAGGTGCTTCGCAGGTTGACA
TAAATCTCCATGTGATGGTGGGATACAAGGGCACTTTCGCAAGCATTGAA
AGTGAAGATGCTCCATTTGCAGCAACTTCTCTTCACACGCCGTATCTTTG
CAATACGTACACACGCATCAGTACCTGATCAGCTCGGGGTCCGAGGGGTT
GTCGGGCGTCGGCTTCGTTTACGGCATTCCTATCCTTCTCATCGGGCTTT
CGTTGCAATACGCGCAGCTAAATCCCGTTCCTGTCGAGGTACGTCTTTTT
TGCGACCATGATCTGGCATGGCTCAAACAAAAGACCAGTCACGTGAGAGC
TAAGGTCTGCCCTTCTCCTGGTCACTCTTTCTCGGTCACCGACTCTGTAC
CGCAAAGTCTATGGATGCGGCGGTACCCCATTCCTATGTCTATGAGAGAC
TAGACTTGTACATTTGCTTGCTGAGCCTAAGGCGCGTCACGAGTTATCTT
TTATTCCATATTGTATTCTCTTTTCCTCTCTTCCTGGAAACATTCCTCGC
CTCTAGTCGACTCCGGAAGCCGACCGACTATTTGAACAGAAATCGACGCC
CACGATCCAGAAAATCAAAAAGGACGTGACCCGGCATCGTTACGGGGATG
ACGCGCACCTTGACACGACGGTTCAGGCCCTTGGCTTGGTAATGCCCAAC
AAGGAGTTCCCGCAGCTCCAGTACCTGACACAGGGCGTGGAGAACGGCGA
GCTCGCGTTCTCCATGGTCTTCAAGAGCGACGACACGCCTTACCGTCTGT
GGGTGGAGCCCGAGCGCATTGCTCGCTACGAGACCTTCTTCGGGCCCGGA
GTGTGGGCCACGGTGGAAAAAGTGGACGCGGAGCGCCGACTCGTGGCCAT
CAAGCTCGTGACAGGAGAGCGGCCGGCGTCTGCACAAGCGTCCCGACCAG
AAGGCGAGAGCGCTGCTCCCGCTGAGCCCGCCTCAGCTTAAGTGAGTCTA
GCCTGAAGGGCAGCAGGAGGACACTGCTGCCTAGAAACGTCTTCCACCGT
GGCAGTGCCTCGTTTTTCTGCCGTGGCCCTTAGTCCAGCACTTCCGTTTC
TTTTCCCCCACCGGGCCATGAACGAACGTTGTCTGATTAGTGTGTTAAGT
GAGCTTATCAAAGGGCGTACGAGTGCAGCGTGGCTTTTGGTAGCCTGGTA
GCTTTGTCGCTGCCAATCGACGTCATGTGTGAGATAGAATCGCAGGAAAG
GGGAAGAATACAAAGTGCCCTTATGCAGCAGCGCGAGTGTGCGAGTGGTC
ACACCTTTCGGTAGTTTTCATCGCAATCAGAATCCTTTGTCGGAGAAAAA
GGACTCATGGGAAAAAACAGGCAACGAAGGAGTTAATCCGATCAAAACTT
GTCCAGTACGTGTCGTGCTTTGTTTCATTTCTTATGCCTCTTCTCGTCGC
GAAGATTTCCTGGTGGAGAATGAGGAATGCATGGTCCTTGTCGGCGTGTG
back to topCoding sequence (CDS) from alignment at CM002457.1:547021..549370- >rna1399 ID=rna1399|Name=rna1399|organism=Nannochloropsis gaditana|type=CDS|length=3768bp|location=Sequence derived from alignment at CM002457.1:547021..549370- (Nannochloropsis gaditana)
TCGACTCCGGAAGCCGACCGACTATTTGAACAGAAATCGACGCCCACGAT
CCAGAAAATCAAAAAGGACGTGACCCGGCATCGTTACGGGGATGACGCGC
ACCTTGACACGACGGTTCAGGCCCTTGGCTTGGTAATGCCCAACAAGGAG
TTCCCGCAGCTCCAGTACCTGACACAGGGCGTGGAGAACGGCGAGCTCGC
GTTCTCCATGGTCTTCAAGAGCGACGACACGCCTTACCGTCTGTGGGTGG
AGCCCGAGCGCATTGCTCGCTACGAGACCTTCTTCGGGCCCGGAGTGTGG
GCCACGGTGGAAAAAGTGGACGCGGAGCGCCGACTCGTGGCCATCAAGCT
CGTGACAGGAGAGCGGCCGGCGTCTGCACAAGCGTCCCGACCAGAAGGCG
AGAGCGCTGCTCCCGCTGAGCCCGCCTCAGCTTAATACCTGATCAGCTCG
GGGTCCGAGGGGTTGTCGGGCGTCGGCTTCGTTTACGGCATTCCTATCCT
TCTCATCGGGCTTTCGTTGCAATACGCGCAGCTAAATCCCGTTCCTGTCG
AGAGCCTTGACAGTATTACGCGAGTCTCAGCAAGGAGGTGATAACATGGT
TGGCACCGATGTTCCTTTTGAGCTGCGTGGGTTTTCCTTGGCAACTGTCG
CATTGGGAGTTGGTGCCCTTATCACTATTGGAAGTCTGGCAGAGATGATT
TATGTGCATCATTTTAATTCCACACGTGATGCTTCTTTTCTTTCGGAATT
TGGTCCGCGCAGCGCAATCATGTCCACGATGCGGCTTGCTTTCGCTCTTG
GCCTTCTCTGCGTCATTTCGACCATCGCGAATGCTTTTGTCATTCCTGCA
GCCAAGTCTTCAAGCCTTGTCAATAGGCAATACCACGCTCGTTACGGGCA
GCAGCGTGGCGTCATTAATTTGGATAAGCTGGCTAAGACCAGTCGACTCC
GGAAGCCGACCGACTATTTGAACAGAAATCGACGCCCACGATCCAGAAAA
TCAAAAAGGACGTGACCCGGCATCGTTACGGGGATGACGCGCACCTTGAC
ACGACGGTTCAGGCCCTTGGCTTGGTAATGCCCAACAAGGAGTTCCCGCA
GCTCCAGTACCTGACACAGGGCGTGGAGAACGGCGAGCTCGCGTTCTCCA
TGGTCTTCAAGAGCGACGACACGCCTTACCGTCTGTGGGTGGAGCCCGAG
CGCATTGCTCGCTACGAGACCTTCTTCGGGCCCGGAGTGTGGGCCACGGT
GGAAAAAGTGGACGCGGAGCGCCGACTCGTGGCCATCAAGCTCGTGACAG
GAGAGCGGCCGGCGTCTGCACAAGCGTCCCGACCAGAAGGCGAGAGCGCT
GCTCCCGCTGAGCCCGCCTCAGCTTAATACCTGATCAGCTCGGGGTCCGA
GGGGTTGTCGGGCGTCGGCTTCGTTTACGGCATTCCTATCCTTCTCATCG
GGCTTTCGTTGCAATACGCGCAGCTAAATCCCGTTCCTGTCGAGAGCCTT
GACAGTATTACGCGAGTCTCAGCAAGGAGGTGATAACATGGTTGGCACCG
ATGTTCCTTTTGAGCTGCGTGGGTTTTCCTTGGCAACTGTCGCATTGGGA
GTTGGTGCCCTTATCACTATTGGAAGTCTGGCAGAGATGATTTATGTGCA
TCATTTTAATTCCACACGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGC
GCAGCGCAATCATGTCCACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTC
TGCGTCATTTCGACCATCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTC
TTCAAGCCTTGTCAATAGGCAATACCACGCTCGTTACGGGCAGCAGCGTG
GCGTCATTAATTTGGATAAGCTGGCTAAGACCAGTCGACTCCGGAAGCCG
ACCGACTATTTGAACAGAAATCGACGCCCACGATCCAGAAAATCAAAAAG
GACGTGACCCGGCATCGTTACGGGGATGACGCGCACCTTGACACGACGGT
TCAGGCCCTTGGCTTGGTAATGCCCAACAAGGAGTTCCCGCAGCTCCAGT
ACCTGACACAGGGCGTGGAGAACGGCGAGCTCGCGTTCTCCATGGTCTTC
AAGAGCGACGACACGCCTTACCGTCTGTGGGTGGAGCCCGAGCGCATTGC
TCGCTACGAGACCTTCTTCGGGCCCGGAGTGTGGGCCACGGTGGAAAAAG
TGGACGCGGAGCGCCGACTCGTGGCCATCAAGCTCGTGACAGGAGAGCGG
CCGGCGTCTGCACAAGCGTCCCGACCAGAAGGCGAGAGCGCTGCTCCCGC
TGAGCCCGCCTCAGCTTAATACCTGATCAGCTCGGGGTCCGAGGGGTTGT
CGGGCGTCGGCTTCGTTTACGGCATTCCTATCCTTCTCATCGGGCTTTCG
TTGCAATACGCGCAGCTAAATCCCGTTCCTGTCGAGAGCCTTGACAGTAT
TACGCGAGTCTCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCT
TTTGAGCTGCGTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGC
CCTTATCACTATTGGAAGTCTGGCAGAGATGATTTATGTGCATCATTTTA
ATTCCACACGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGCA
ATCATGTCCACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCAT
TTCGACCATCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGCC
TTGTCAATAGGCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCATT
AATTTGGATAAGCTGGCTAAGACCAGTCGACTCCGGAAGCCGACCGACTA
TTTGAACAGAAATCGACGCCCACGATCCAGAAAATCAAAAAGGACGTGAC
CCGGCATCGTTACGGGGATGACGCGCACCTTGACACGACGGTTCAGGCCC
TTGGCTTGGTAATGCCCAACAAGGAGTTCCCGCAGCTCCAGTACCTGACA
CAGGGCGTGGAGAACGGCGAGCTCGCGTTCTCCATGGTCTTCAAGAGCGA
CGACACGCCTTACCGTCTGTGGGTGGAGCCCGAGCGCATTGCTCGCTACG
AGACCTTCTTCGGGCCCGGAGTGTGGGCCACGGTGGAAAAAGTGGACGCG
GAGCGCCGACTCGTGGCCATCAAGCTCGTGACAGGAGAGCGGCCGGCGTC
TGCACAAGCGTCCCGACCAGAAGGCGAGAGCGCTGCTCCCGCTGAGCCCG
CCTCAGCTTAATACCTGATCAGCTCGGGGTCCGAGGGGTTGTCGGGCGTC
GGCTTCGTTTACGGCATTCCTATCCTTCTCATCGGGCTTTCGTTGCAATA
CGCGCAGCTAAATCCCGTTCCTGTCGAGAGCCTTGACAGTATTACGCGAG
TCTCAGCAAGGAGGTGATAACATGGTTGGCACCGATGTTCCTTTTGAGCT
GCGTGGGTTTTCCTTGGCAACTGTCGCATTGGGAGTTGGTGCCCTTATCA
CTATTGGAAGTCTGGCAGAGATGATTTATGTGCATCATTTTAATTCCACA
CGTGATGCTTCTTTTCTTTCGGAATTTGGTCCGCGCAGCGCAATCATGTC
CACGATGCGGCTTGCTTTCGCTCTTGGCCTTCTCTGCGTCATTTCGACCA
TCGCGAATGCTTTTGTCATTCCTGCAGCCAAGTCTTCAAGCCTTGTCAAT
AGGCAATACCACGCTCGTTACGGGCAGCAGCGTGGCGTCATTAATTTGGA
TAAGCTGGCTAAGACCAG back to top
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