EWM29288.1, cds1397 (CDS) Nannochloropsis gaditana

Overview
NameEWM29288.1
Unique Namecds1397
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:549044..549291 -
Alignment locationCM002457.1:548493..548634 -
Alignment locationCM002457.1:548233..548349 -
Alignment locationCM002457.1:547530..547964 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29288.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100029g26.9545.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:549044..549291 -
CM002457.1supercontigCM002457.1:548493..548634 -
CM002457.1supercontigCM002457.1:548233..548349 -
CM002457.1supercontigCM002457.1:547530..547964 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021275DUF2854
Homology
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|585111811|gb|EWM29288.1| (hypothetical protein Naga_100029g26 [Nannochloropsis gaditana])

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
Query:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVENGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPASAQASRPEGESAAPAEPASA 313
            MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVENGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPASAQASRPEGESAAPAEPASA
Sbjct:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVENGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPASAQASRPEGESAAPAEPASA 313          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|585111812|gb|EWM29289.1| (hypothetical protein Naga_100029g26 [Nannochloropsis gaditana])

HSP 1 Score: 340.502 bits (872), Expect = 3.675e-115
Identity = 173/192 (90.10%), Postives = 177/192 (92.19%), Query Frame = 0
Query:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADR---LFEQKSTPTIQKI 189
            MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVE     D      +QK++    K+
Sbjct:    1 MIYVHHFNSTRDASFLSEFGPRSAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVEVRLFCDHDLAWLKQKTSHVRAKV 192          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|219125791|ref|XP_002183156.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405431|gb|EEC45374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 256.914 bits (655), Expect = 5.026e-81
Identity = 120/192 (62.50%), Postives = 154/192 (80.21%), Query Frame = 0
Query:  104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQG-VENGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERP 292
            PFE+RGFSL  + +G G LIT  S AEYL  SG +GL  SG+GFVYGIP+ L G +L+YA++NPVPV +TP A+R+F++K+T TI KIK+DVTRHRYGD+AHLDTTV+ LGLV+P K +PQLQ L Q  V +GELAF+MV++S DTPY++W +P R+ +YE FFGPGV+A V K+DAE+RLV I+L TG RP
Sbjct:   84 PFEIRGFSLGNLVVGAGILITFASFAEYLSESGGDGLNVSGLGFVYGIPVFLAGAALKYAEINPVPVATTPAAERVFDRKATDTILKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKAYPQLQELRQDEVNDGELAFTMVWQSVDTPYKMWADPRRVLKYEKFFGPGVYADVVKIDAEQRLVGIRLTTGTRP 275          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|1210524721|dbj|GAX16429.1| (hypothetical protein FisN_19Lh005 [Fistulifera solaris])

HSP 1 Score: 233.417 bits (594), Expect = 8.118e-73
Identity = 117/201 (58.21%), Postives = 155/201 (77.11%), Query Frame = 0
Query:  104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEG-LSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGV-ENG-ELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPASAQASRPE 301
            PFE+RGFSL    +G+G LITI S AEYL  +  EG +SG+GFVYGIPI L G +L+YA++ PVP  + P+A+ LFE+K+T T++KIK+DVTRHRYGD+AHLDTTV+ LGLV+P K +PQL+ L + V ENG +LAF+MV++S DTPY++W +  R+ +YETFFGPGV A V KVDAE+RLV I+L T   PA  + + P+
Sbjct:   28 PFEIRGFSLGNSVIGLGLLITIASFAEYL--AQDEGSMSGLGFVYGIPIFLAGSALKYAEIEPVPAFTQPKAEGLFEKKATETMRKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKAYPQLRELREEVAENGVDLAFTMVWQSLDTPYKMWADERRVKKYETFFGPGVTAEVVKVDAEQRLVGIRLTTTTAPAPLKEAAPQ 226          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|298713742|emb|CBJ33716.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 235.343 bits (599), Expect = 1.203e-72
Identity = 142/288 (49.31%), Postives = 192/288 (66.67%), Query Frame = 0
Query:   23 SAIMSTMRLAFALGLLCVISTIANAFVIPAAKSSSLVNRQYHARYGQQRGVINLDKLAKTRALTVLRESQQGGDNMVGTDVPFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVE-NGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVT---GERPASAQASRPEGESAA 306
            +A ++ +  A A GL+   S   +A V+ +A+S S     +H   G++R  + L   +   +     +   GG N+ G + PFE+RGFSLA  A   G  IT  S  EY  + G+ GLSG+GFVYGIPI LIGL+L+YA+L P P+++TPEA+ LFE+K+T TI+ IK DVTRHRYGD+AHLDTTV+ LGLVMP  ++PQLQY++Q +E NGEL F+MVF+S  TP++ WVEPER+ +Y  FFGPGV A V KVDA+ +LVAIKL T   G +P     + P  E+ A
Sbjct:   19 TAFVAPVGQAAAGGLVASSSQQQHARVLVSARSQSSDTFHHHRAGGRRRQRLALQMQSDGPS-----QWAGGGINVSG-EAPFEIRGFSLANAAALAGLAITCASFYEYFSTGGAGGLSGIGFVYGIPIALIGLALKYAELPPAPLQTTPEAEALFEEKATETIRSIKSDVTRHRYGDEAHLDTTVKFLGLVMPQSDYPQLQYISQTIEPNGELGFTMVFQSKMTPFKRWVEPERVEKYVAFFGPGVDAEVIKVDAQEKLVAIKLTTLPPGAQPTPKVTAPPAEETVA 300          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|1210521445|dbj|GAX19435.1| (hypothetical protein FisN_19Hh005 [Fistulifera solaris])

HSP 1 Score: 231.876 bits (590), Expect = 2.434e-72
Identity = 115/201 (57.21%), Postives = 152/201 (75.62%), Query Frame = 0
Query:  104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEG-LSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVENG--ELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPASAQASRPE 301
            PFE+RGFSL    +G+G LITI S AEYL  +  EG +SG+GFVYGIPI L G +L+YA++ PVP  + P+A+ LFE+K+T T++KIK+DVTRHRYGD+AHLDTTV+ LGLV+P K +PQL+ L + V     +LAF+MV++S DTPY++W +  R+ +YETFFGPGV A V KVDAE+RLV I+L T   PA  + S P+
Sbjct:   28 PFEIRGFSLGNSVIGLGLLITIASFAEYL--AQDEGSMSGLGFVYGIPIFLAGSALKYAEIEPVPAFTQPKAEGLFEKKATETMRKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKAYPQLRELREEVAENRVDLAFTMVWQSLDTPYKMWADERRVKKYETFFGPGVTAEVVKVDAEQRLVGIRLTTTTAPAPMKESAPQ 226          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|224000149|ref|XP_002289747.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974955|gb|EED93284.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 232.646 bits (592), Expect = 7.633e-72
Identity = 121/210 (57.62%), Postives = 154/210 (73.33%), Query Frame = 0
Query:  104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGV-ENGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPASAQ--ASRPEGESAAPA 308
            PFE+RGFSL       G  +T+ S AEYL SSG +GL  SG+GFVYGIPI L G +L+YA+++PVP  S+  AD  FE K+T  I+KIK+DVTRHRYGD+AHLDTTV+ LGLV+P K +PQL  L Q V + G+LAF+MV++S DTPY++W + +R  RYETFFGPGV A V K+DAE+RLV I+L TG  P S +  AS+ E E+ A A
Sbjct:   76 PFEIRGFSLGNFITIAGIAVTVLSFAEYLSSSGGDGLNVSGLGFVYGIPITLAGAALKYAEIDPVPCISSSAADAAFESKATEIIKKIKQDVTRHRYGDEAHLDTTVKKLGLVVPGKAYPQLMELRQDVTDGGDLAFTMVWQSLDTPYKMWADEKRRKRYETFFGPGVGAEVVKIDAEQRLVGIRLTTG-GPLSEEYLASKVEKEAVATA 284          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|1072234715|gb|OEU19444.1| (hypothetical protein FRACYDRAFT_162891, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 221.861 bits (564), Expect = 5.216e-69
Identity = 105/180 (58.33%), Postives = 138/180 (76.67%), Query Frame = 0
Query:  109 GFSLATVALGVGALITIGSLAEYLISSGSEGL--SGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVENGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKL 286
            GFSL  + +  G +IT+ S AEYL  S  EGL  SG+GFVYGIP+ L G +L+YA++NPVP+ + P  +R++E K T TI KIK+DVTRHRYGD+AHLDTTV+ LGLV+P K++PQLQ L     +GELAF+MV++S DTPY++W +  R+ +YETFFGPGV A V K+DAE+RLV I+L
Sbjct:    1 GFSLGNLVILSGVVITVLSFAEYLSDSSGEGLNVSGLGFVYGIPVCLAGAALKYAEINPVPLITNPAGERVYEAKKTETIDKIKQDVTRHRYGDEAHLDTTVRKLGLVVPGKDYPQLQELRAEDADGELAFTMVWQSIDTPYKMWADERRVKKYETFFGPGVTAEVVKIDAEQRLVGIRL 180          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|873234166|emb|CEM02223.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 225.713 bits (574), Expect = 2.428e-68
Identity = 112/192 (58.33%), Postives = 144/192 (75.00%), Query Frame = 0
Query:  104 PFELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLV-MPNKEFPQLQYLTQGVE-NGELAFSMVFKSDDTPYRLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGERPA 293
            P ++RGFSLA   L  G++IT+ S  E+    G  GL  +GF+YG+PILLIG++LQYA+L P PV +T EADR+F+ K+T TI+KIK+DVTRHRYGDDAHLDTTV++LGL   P KE PQLQY+ QGV  +GEL F MV+KS+ TP+R+W +  R+ +++ +FGPGVWA   KVD   RLV IKL TGER A
Sbjct:   17 PIQIRGFSLAKATLLAGSVITLASFWEFFGQKGGSGLGSLGFIYGVPILLIGVALQYAELEPCPVRTTSEADRMFDAKATETIKKIKEDVTRHRYGDDAHLDTTVESLGLWPNPEKEPPQLQYIQQGVSPDGELEFMMVWKSETTPFRMWCDVNRVLKFDRYFGPGVWAQTVKVDGPNRLVGIKLTTGERKA 208          
BLAST of EWM29288.1 vs. NCBI_GenBank
Match: gi|551653686|ref|XP_005829620.1| (hypothetical protein GUITHDRAFT_111319 [Guillardia theta CCMP2712] >gi|428173740|gb|EKX42640.1| hypothetical protein GUITHDRAFT_111319 [Guillardia theta CCMP2712])

HSP 1 Score: 199.519 bits (506), Expect = 1.488e-58
Identity = 97/188 (51.60%), Postives = 133/188 (70.74%), Query Frame = 0
Query:  106 ELRGFSLATVALGVGALITIGSLAEYLISSGSEGLSGVGFVYGIPILLIGLSLQYAQLNPVPVESTPEADRLFEQKSTPTIQKIKKDVTRHRYGDDAHLDTTVQALGLVMPNKEFPQLQYLTQGVENGELAFSMVFKSDDTPY--RLWVEPERIARYETFFGPGVWATVEKVDAERRLVAIKLVTGER 291
            ++RGFSLA + LG+G  IT+ S  +Y  +  S  L+ +GFVYG+PI L G +L+YA++ PV V++    + +F +K+   ++K++ DVTRHRYGDDAHLD++++ LGLV+  K FPQ+Q +    E GELAF+MVF+S DTPY  + W +P R+ RYETFFG  V A V KV  E RLVAIKL TGER
Sbjct:   84 QIRGFSLANLTLGLGIFITLFSFYQYFTNQNS--LTSLGFVYGLPIALGGFALKYAEILPVDVDTDERGEAIFAEKANEILRKVRADVTRHRYGDDAHLDSSLEKLGLVVEGKGFPQMQKIVIKNEGGELAFTMVFQSKDTPYKGKTWADPVRVKRYETFFGGDVNAEVIKVSKEERLVAIKLTTGER 269          
The following BLAST results are available for this feature:
BLAST of EWM29288.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111811|gb|EWM29288.1|0.000e+0100.00hypothetical protein Naga_100029g26 [Nannochlorops... [more]
gi|585111812|gb|EWM29289.1|3.675e-11590.10hypothetical protein Naga_100029g26 [Nannochlorops... [more]
gi|219125791|ref|XP_002183156.1|5.026e-8162.50predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210524721|dbj|GAX16429.1|8.118e-7358.21hypothetical protein FisN_19Lh005 [Fistulifera sol... [more]
gi|298713742|emb|CBJ33716.1|1.203e-7249.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210521445|dbj|GAX19435.1|2.434e-7257.21hypothetical protein FisN_19Hh005 [Fistulifera sol... [more]
gi|224000149|ref|XP_002289747.1|7.633e-7257.62predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072234715|gb|OEU19444.1|5.216e-6958.33hypothetical protein FRACYDRAFT_162891, partial [F... [more]
gi|873234166|emb|CEM02223.1|2.428e-6858.33unnamed protein product [Vitrella brassicaformis C... [more]
gi|551653686|ref|XP_005829620.1|1.488e-5851.60hypothetical protein GUITHDRAFT_111319 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1399rna1399Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications