rna1398, rna1398 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1398
Unique Name	rna1398
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1608
Alignment location	CM002457.1:544211..547124 +

Link to JBrowse

Properties


Property Name	Value
Product	Transmembrane transporter protein, chloroquine resistant
Orig transcript id	gnl\|cribi\|Naga_100029g27.9547.mrna
Orig protein id	gnl\|cribi\|Naga_100029g27.9547
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:544211..547124 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100029g27	gene1350	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1398	rna1398-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29290.1	cds1396	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:544211..547124+
coding sequence from alignment at CM002457.1:544211..547124+

mRNA sequence

>rna1398 ID=rna1398|Name=rna1398|organism=Nannochloropsis gaditana|type=mRNA|length=1608bp
CCATCATAGTCAGGCTTCAGCGAAGCCCCTTTATACAAGGAACAGACGCT
ATAAAGCACTCCGTTGACACGCATCGAGAGAATGCTATGGCACAGATATA
AAGCCCCATGATCACGAAAGACCATCAGGTCGACTTCTTACTTGTCCTCG
ATGAAATGGAAGCAGGAACGGGTCTCGCCGAGGGAGCCAACGTCACGAGC
GAGTCTTTACCCCCCCGGCACTACTCTAGCGCTGTCCGGGTGTCACGTGC
GTGGCTACTGTCACACTATTACGCCTTCCTTACACAGATTTATAAACCAG
GCACTCAATAGGCGACAAAAGGTGTCGTGAAGTTGCCTTGCATGCTTGCA
AAAAAATAGCCATCTACGAAGTCCGCCAAAGGTGTGCAAGCTGGTCAGCC
GGAAACATGGTTTGGGAGAAGGAGACTGCGAGTCAAAGGCAGGACGGAAG
AGATGGAGACGACAGGGTCGATCCATTTGCAGCGGCAGAGCGAAAATTAG
AAGATCTAGTTTGGGCAGAACTACTCAAAGCCGAGGAGTCTCTGTATGCC
TCCGGCAGCGATAATGCTTCTACAGCAGCCAAGAAAGATCAATCCAAAGG
TTTGGCAGTGCAGGATGTACATCCGAATGACCCGGAAGCTCAATTCTGGG
CCTTGCACCACCGACAAGAAGAGGAGGCAAAATTAAGAGCTCTGGAAGGA
AAACTCAACTTTGTCAGGGAGTGGTCTTCCGCCTTCGTCCAGGTCAGGGC
GCTGGGCAAGTCAGTGTGCACTAGTCTTCCAGCTCATCAACCCAAGCTTG
ACACAGAGGCAGAGGGTACAGAAGATACCGTGTCGCCACATTCGCGAGTA
ACAGGATCGGAAGAGCCTCTTTGTTCCATGCCCTCCTTTCCTAAATTCCT
TTCGGCGAAAGAGCAAAAGCAGCGAGACGAGATTAGGAATGATCACACGG
ACGTTTACAACTACCGATCTGTGTACAGTCGGGTCGAAAGCAAAGATCCT
GCCGGATTGTATGCAAGATCATGTCAACAATCAGTGGAGGCTCAGGAGGA
AGTTTTGGCTGTGTAAGACGTGTGCTACGTGCTTCTATTTTCTTCCCCCT
CTGCAATGAGATATAAGTTGATGAAGTTTGGATATTCGACTCTCTCATAA
AGTCCTCACGTACAACCACAGCCATTGCAGCAGAGAGGACAAGAGTACCC
GAACAGTTGATTGTCGTAAAGAAGGGCAACACCGTAGCAAACAGCAGGAA
ACTCATATATATGCATCTCACGACATGATACAAGACGTTCAAAAGTTCCA
TGATCCATTTGAAAACGCAAAAGAAAAATTGTGCAGAGGGGGGGAGCTTG
CAGAAAGGCTGGTTGAGGGGATCTGGCAAGATGCGCTAGTTCTACTCGAA
GCACCATTAATGCAAATGATCGAGGCAAAGCGTACTGAGACAAATGTCCA
TCCTGAAAGAGCGATGACCTGCGACATGCCGGAAATTTCCTCTGACGATT
CAGGAGTCAAAATTGCCAACAAGCGCAAGCTGAGTACATCCACCACATGC
AAGTAAAAAAAGGCGCGGATGTAGAGAACCTGAAATACACTATGTCGATT
ATATCTGG

protein sequence of rna1398

>rna1398-protein ID=rna1398-protein|Name=rna1398|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MADEETPLRPAISTSAGTSSSTASTAGTTPIRRPSFLLSKLPPPPPLEPE
TAAKKTSKAVKLAIYVFASTFTAAANAVWFKKMLNAYRPNFEFFGNQFNV
FLYVLLAALVVLHKRVRYGAHWWHKQDLPLSVLCFMGFLDATGSILSTMG
GAYTAGAVQTLLNQVIIPMTLALSFLCLGQRFTGAQTLGALTIFIGAGIA
IVPSFLAGKGARAGSGSGEGPPTTTLTGVLLFFSSILPGAFSNVYKEWGF
AQFHVDLYYLTTFVSAIQVLFGFAFLPALQVPIFGGMPLREIPQQFTLGF
KCFRGINTLPGDDCKDAFLTMWMYVLINFLFNVLQLLITKHGGATLLVIS
AALALPVTNFAFSMTWIMGEDTEPFNPFDAVALAVVLVGFLLYSAWDDLV
DRRKKQRKRLPIQFAAGSVMYLRERADSDPSTPGYTPIRVEPPRRRGSID
VQLNRAPHPDGTNKGISASTRLLAPSKAVPILLQQKQQRRREEAGGGLAP
GRPSSYQIDIVSDEVGTVSL

mRNA from alignment at CM002457.1:544211..547124+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1398 ID=rna1398|Name=rna1398|organism=Nannochloropsis gaditana|type=mRNA|length=2914bp|location=Sequence derived from alignment at CM002457.1:544211..547124+ (Nannochloropsis gaditana)
GGAACCAGGCTGGGGAGGTTGACTGCTTCCTTTAGCAGGGCAGCAACGTA
CTCGTGTTCCCTCTACTGGCTAGCAGCAGCCACTCACTTGCATCGCATAA
ATGCGGTACACACTACGAGAAGGGCAACGTCAGATGCAGTCAATTGTGGA
ACATGAGCGTAGAGATTGCTGAGGAAAGACTGTTGCAATTTCGTCTGTAT
CACCAGTCGTCATTTAAACGAGGACCTTGACTCCTGATCACCGACGGGAT
GGCACTCTGCTATGTGCTTGAAATGAGGTTGTTGAGCAAGACAGATTCGG
AGAGTGTCCAGATTTTGATGACAAGGCCTTATGTGATAGCAATGTGGGTG
GTTGCCATTTACTTGTTACCTGTCTGCTTTGTTTTTTAAATTTTTACTCT
TGACAAACGCCGCCGCAATAACACCCCCTTCTCGTGTCGGCGCGTATTGT
TGCTCACAGAGAATGCGCGGCCATGATGACTTACTTCCTCACTTTAATTG
GATAGAAgaatgggaagggaaggtatTACTGATTTTTGCGTTGGAAGGTG
TGAGATATTGCCAAGAAATAGGATTTTCAGACGATCATTCTGCGAGCCTC
ATCTTTGCCCTCGCTCCTGCACCTGCTTTCACGTGTACAAAGCCGAGCAT
TGACGATATGTTTTGGGTCCATCACAACAAGGTAGGCTGACAGTCCATCT
TGTTGCTCCCTGGTcatggcggacgaggaaacaCCTTTGCGACCTGCCAT
CTCGACCTCAGCCGGGACGTCGTCGAGCACCGCCAGCACCGCGGGAACGA
CTCCCATTCGTCGACCATCATTCCTACTCTCTAAactcccgcccccacca
ccgctGGAACCTGAAACCGCGGCGAAGAAGACAAGCAAAGCAGTGAAACT
AGCGATCTATGTTTTCGGTAGGTCGGGGGTCAGACATGCCCGGCTCATCA
TCTCCGCCATATTGTTTTCTCTGGGAGGGGTTTCTCTTCCACGCGTGTTT
CTTGTTGGCGTCCTTCATTCTCACCTGACAAGTACTAATAGTACACATGT
CGTACCCGTGCTTTCAATATTTACAGCCTCGACCTTCACCGCTGCCGCTA
ACGCTGTATGGTTCAAAAAGATGCTCAATGCATATCGCCCCAACTTTGAG
TTTTTCGGAAACCAGTTTAATGTATTTCTCTATGTCTTGCTGGCGGCTCT
AGTCGTGCTTCATAAGCGGGTGCGATATGGGGCCCACTGGTGGCACAAGC
AGGACCTTCCCCTCAGCGTGCTCTGCTTCATGGGTTTCCTGGACGCGACC
GGCTCCATCCTGTCCACCATGGGAGGCGCATACACTGCCGGCGCCGTGCA
GACCCTTCTCAACCAGGTGATAATTCCCATGACACTGGCACTCTCTTTTC
TCTGCCTCGGTCAGCGCTTCACGGGCGCGCAGACTCTTGGCGCGTTGACC
ATTTTCATTGGCGCTGGGATAGCCATAGTTCCTTCGTTTTTGGCCGGAAA
AGGGGCCCGCGCAGGCAGTGGTAGCGGTGAAGGACCGCCGACGACCACGC
TTACTGGcgtccttcttttcttctccagCATCTTACCGGGCGCGTTCTCG
AACGTCTACAAAGAATGGGGTTTTGCGCAATTTCACGTCGACCTCTACTA
TTTGACAACCTTTGTCTCGGCCATCCAAGTCCTCTTTGGTTTCGCCTTCT
TGCCTGCGCTTCAAGTCCCTATATTTGGCGGCATGCCTCTCCGTGAAATC
CCTCAGCAGTTCACACTTGGTTTTAAGTGTTTCCGAGGTATCAACACCCT
GCCCGGCGACGACTGCAAGGACGCTTTCTTGACTATGTGGATGTACGTCT
TGATTAACTTTCTATTCAACGTCCTTCAGTTGCTCATCACCAAACACGGA
GGGGCAACCCTCCTGGTAATTTCCGCCGCCTTGGCTTTGCCTGTGACCAA
CTTCGCCTTCAGCATGACGTGGATCATGGGTGAGGACACCGAGCCCTTCA
ACCCCTTCGACGCAGTGGCGCTGGCCGTGGTCCTGGTCGGTTTTCTTCTC
TATAGCGCCTGGGACGACCTTGTTGACCGGCGCAAAAAGCAGCGAAAACG
CTTGCCCATACAATTTGCGGCGGGGTCGGTCATGTATCTGCGGGAGCGGG
CCGACTCCGATCCCTCTACGCCTGGCTACACGCCGATACGAGTCGAGCCC
CCTAGGCGCCGGGGTAGCATAGACGTCCAGCTGAACCGTGCCCCGCACCC
TGACGGCACCAACAAGGGCATCAGTGCCTCGACGCGGCTTCTAGCTCCGT
CAAAGGCTGTTCCCATCCTCTTACAGCAGAAACAGCAACGGCGACGTGAA
GAGGCTGGCGGGGGGTTGGCACCAGGGAGGCCGAGCTCGTACCAGATAGA
TATAGTGAGCGACGAGGTCGGAACTGTTAGTCTGTAGTCGTAGGACTAGC
AAAAAAGAAAACCGCGCTGGCGGAAGCGAACAGCTTGATAAGGCGCGAAG
TAAGGAGTATGCTTTCCGGGGCGAGCCAGGGAAGGCgtaagggaggagaa
aatgtTACAAAGTGTAAGTAGGGTCAGTCGCGTGATTGGATACACCTGGC
GAAAGACTGGCGCAATGTACAGAAAAGCACTTTAAAAAGTACCATTGTAT
GTGAGGCATGAATGACATCAGAGTTGTAATGAGACCGTGTGCGAATGTCA
ACCAGACCGAGAAGTGTCCTCCGCTGGCGGAGGTGTTGGCCGGAAAACGG
GCAGAAAGAAACAAGGGAGTCGGCAGTAAGAAATTAGTATGATACAGGCT
CATCGTGGATCACACGCCGACAAGGACCATGCATTCCTCATTCTCCACCA
GGAAATCTTCGCGACGAGAAGAGGCATAAGAAATGAAACAAAGCACGACA
CGTACTGGACAAGT

Coding sequence (CDS) from alignment at CM002457.1:544211..547124+

>rna1398 ID=rna1398|Name=rna1398|organism=Nannochloropsis gaditana|type=CDS|length=3126bp|location=Sequence derived from alignment at CM002457.1:544211..547124+ (Nannochloropsis gaditana)
atggcggacgaggaaacaCCTTTGCGACCTGCCATCTCGACCTCAGCCGG
GACGTCGTCGAGCACCGCCAGCACCGCGGGAACGACTCCCATTCGTCGAC
CATCATTCCTACTCTCTAAactcccgcccccaccaccgctGGAACCTGAA
ACCGCGGCGAAGAAGACAAGCAAAGCAGTGAAACTAGCGATCTATGTTTT
CGCCTCGACCTTCACCGCTGCCGCTAACGCTGTATGGTTCAAAAAGATGC
TCAATGCATATCGCCCCAACTTTGAGTTTTTCGGAAACCAGTTTAATGTA
TTTCTCTATGTCTTGCTGGCGGCTCTAGTCGTGCTTCATAAGCGGGTGCG
ATATGGGGCCCACTGGTGGCACAAGCAGGACCTTCCCCTCAGCGTGCTCT
GCTTCATGGGTTTCCTGGACGCGACCGGCTCCATCCTGTCCACCATGGGA
GGCGCATACACTGCCGGCGCCGTGCAGACCCTTCTCAACCAGGTGATAAT
TCCCATGACACTGGCACTCTCTTTTCTCTGCCTCGGTCAGCGCTTCACGG
GCGCGCAGACTCTTGGCGCGTTGACCATTTTCATTGGCGCTGGGATAGCC
ATAGTTCCTTCGTTTTTGGCCGGAAAAGGGGCCCGCGCAGGCAGTGGTAG
CGGTGAAGGACCGCCGACGACCACGCTTACTGGcgtccttcttttcttct
ccagCATCTTACCGGGCGCGTTCTCGAACGTCTACAAAGAATGGGGTTTT
GCGCAATTTCACGTCGACCTCTACTATTTGACAACCTTTGTCTCGGCCAT
CCAAGTCCTCTTTGGTTTCGCCTTCTTGCCTGCGCTTCAAGTCCCTATAT
TTGGCGGCATGCCTCTCCGTGAAATCCCTCAGCAGTTCACACTTGGTTTT
AAGTGTTTCCGAGGTATCAACACCCTGCCCGGCGACGACTGCAAGGACGC
TTTCTTGACTATGTGGATGTACGTCTTGATTAACTTTCTATTCAACGTCC
TTCAGTTGCTCATCACCAAACACGGAGGGGCAACCCTCCTGGTAATTTCC
GCCGCCTTGGCTTTGCCTGTGACCAACTTCGCCTTCAGCATGACGTGGAT
CATGGGTGAGGACACCGAGCCCTTCAACCCCTTCGACGCAGTGGCGCTGG
CCGTGGTCCTGGTCGGTTTTCTTCTCTATAGCGCCTGGGACGACCTTGTT
GACCGGCGCAAAAAGCAGCGAAAACGCTTGCCCATACAATTTGCGGCGGG
GTCGGTCATGTATCTGCGGGAGCGGGCCGACTCCGATCCCTCTACGCCTG
GCTACACGCCGATACGAGTCGAGCCCCCTAGGCGCCGGGGTAGCATAGAC
GTCCAGCTGAACCGTGCCCCGCACCCTGACGGCACCAACAAGGGCATCAG
TGCCTCGACGCGGCTTCTAGCTCCGTCAAAGGCTGTTCCCATCCTCTTAC
AGCAGAAACAGCAACGGCGACGTGAAGAGGCTGGCGGGGGGTTGGCACCA
GGGAGGCCGAGCTCGTACCAGATAGATATAGTGAGCGACGAGGTCGGAAC
TGTTAGTCTGTAGatggcggacgaggaaacaCCTTTGCGACCTGCCATCT
CGACCTCAGCCGGGACGTCGTCGAGCACCGCCAGCACCGCGGGAACGACT
CCCATTCGTCGACCATCATTCCTACTCTCTAAactcccgcccccaccacc
gctGGAACCTGAAACCGCGGCGAAGAAGACAAGCAAAGCAGTGAAACTAG
CGATCTATGTTTTCGCCTCGACCTTCACCGCTGCCGCTAACGCTGTATGG
TTCAAAAAGATGCTCAATGCATATCGCCCCAACTTTGAGTTTTTCGGAAA
CCAGTTTAATGTATTTCTCTATGTCTTGCTGGCGGCTCTAGTCGTGCTTC
ATAAGCGGGTGCGATATGGGGCCCACTGGTGGCACAAGCAGGACCTTCCC
CTCAGCGTGCTCTGCTTCATGGGTTTCCTGGACGCGACCGGCTCCATCCT
GTCCACCATGGGAGGCGCATACACTGCCGGCGCCGTGCAGACCCTTCTCA
ACCAGGTGATAATTCCCATGACACTGGCACTCTCTTTTCTCTGCCTCGGT
CAGCGCTTCACGGGCGCGCAGACTCTTGGCGCGTTGACCATTTTCATTGG
CGCTGGGATAGCCATAGTTCCTTCGTTTTTGGCCGGAAAAGGGGCCCGCG
CAGGCAGTGGTAGCGGTGAAGGACCGCCGACGACCACGCTTACTGGcgtc
cttcttttcttctccagCATCTTACCGGGCGCGTTCTCGAACGTCTACAA
AGAATGGGGTTTTGCGCAATTTCACGTCGACCTCTACTATTTGACAACCT
TTGTCTCGGCCATCCAAGTCCTCTTTGGTTTCGCCTTCTTGCCTGCGCTT
CAAGTCCCTATATTTGGCGGCATGCCTCTCCGTGAAATCCCTCAGCAGTT
CACACTTGGTTTTAAGTGTTTCCGAGGTATCAACACCCTGCCCGGCGACG
ACTGCAAGGACGCTTTCTTGACTATGTGGATGTACGTCTTGATTAACTTT
CTATTCAACGTCCTTCAGTTGCTCATCACCAAACACGGAGGGGCAACCCT
CCTGGTAATTTCCGCCGCCTTGGCTTTGCCTGTGACCAACTTCGCCTTCA
GCATGACGTGGATCATGGGTGAGGACACCGAGCCCTTCAACCCCTTCGAC
GCAGTGGCGCTGGCCGTGGTCCTGGTCGGTTTTCTTCTCTATAGCGCCTG
GGACGACCTTGTTGACCGGCGCAAAAAGCAGCGAAAACGCTTGCCCATAC
AATTTGCGGCGGGGTCGGTCATGTATCTGCGGGAGCGGGCCGACTCCGAT
CCCTCTACGCCTGGCTACACGCCGATACGAGTCGAGCCCCCTAGGCGCCG
GGGTAGCATAGACGTCCAGCTGAACCGTGCCCCGCACCCTGACGGCACCA
ACAAGGGCATCAGTGCCTCGACGCGGCTTCTAGCTCCGTCAAAGGCTGTT
CCCATCCTCTTACAGCAGAAACAGCAACGGCGACGTGAAGAGGCTGGCGG
GGGGTTGGCACCAGGGAGGCCGAGCTCGTACCAGATAGATATAGTGAGCG
ACGAGGTCGGAACTGTTAGTCTGTAG

Synonyms

Publications