rna1396, rna1396 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1396
Unique Name	rna1396
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	810
Alignment location	CM002457.1:540847..542624 -

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF1084
Orig transcript id	gnl\|cribi\|Naga_100029g29.9543.mrna
Orig protein id	gnl\|cribi\|Naga_100029g29.9543
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:540847..542624 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100029g29	gene1348	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1396	rna1396-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29286.1	cds1394	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:540847..542624-
coding sequence from alignment at CM002457.1:540847..542624-

mRNA sequence

>rna1396 ID=rna1396|Name=rna1396|organism=Nannochloropsis gaditana|type=mRNA|length=810bp
CTCTCCACCTCCTTTTGGTTAGTCTCAAGACGACCACGAGTAGTCAATGG
ATGCTGCTCCTCGTGGTGGTCCTCCACTGGTGACATACCTTTCTCTTGCT
TGTTATATAGATGCCGCCGCACCGAGTCACACAACAACTTACACACCGGA
CAGGCCAACATGCTTTTTGCCGCACGCTCAGCGGCTACTTCAGCTTTACG
GCGTGGTCTGGGCCATCCACAGCCTCATTTCGTGCGACATGGGGCAAGAC
GAATGATGGGAGGAGGGGGGCACTCCCCAGCTCCGCATCCGTCGCAGCCC
AAACAAGCCTTTCTGTTTAACGAGGGTCCTGGCCCGCGAAAAGTAGAGAT
GTGGGAGCCAATTACGAGTACCGTGTACTGGTCTGCTTTCTTAATTCTGG
TCGTAGGGCTTTACAATGCTCCTGAGACACGCATTCAGGAATGGGCAGCG
GAAGAAGCAGAGGCAAGATTAGCAAGGATAGAGGAGGGCAAGGACGTAGA
GTACGGGCACATATACCACAAGCAACTCTTGACGGGAGGCTTTGTCCAGC
ATTCGGCCGCGAATGCTGACAGCCCGCCGGAGGCAGAGGAGGAGGAGGAG
GAGGAGGAGGACTGACGTCCACTTTGTGATAGAAGAGACATACTGAAAGC
ACGTGGGATGGTGGAAATTTCGGGAATCGAGGGGGACACGGCATTTGCAA
GGTCAATACGGCCCTTTGGTTGAGGCGCGGTTTCTTGGAAATTTGTTTAG
AATGGTGGGAGGAGAGCAGTAACACGTGAAAATAAAAAATGTGAGAAACA
CGTTGACTTT

protein sequence of rna1396

>rna1396-protein ID=rna1396-protein|Name=rna1396|organism=Nannochloropsis gaditana|type=polypeptide|length=454bp
MVFRDHGALYLCHSILSMRVNGVLYSVCSLYKGASLKPDYDGTSRLSHHH
LPVPPPTLLPLIKHSAMREWLLLPDAALFLGVAGLCFLERVRSKEDSDMA
TTSAGMEMRRRIQLLLLVANLTRCVCLIVETALFEAHNCPSLWTCAVVRC
VPDLLFLTTYSLLLLFWAQLGRTARGAPCPRLNLMFSLGNGTLYTGFLLI
VAMAAGDVLSHGEALQSFFMLLGLSYLVSFLFVLKFAHQFSRMALPYLLR
RRVLALSLLCGTVFLVHMIYYLSVGTGLLASWLARSGYPPRPEAYIFDAI
LYPLQELLPSLAILAVLNRRRGQLPTPLAAAYPYLGAGPYTKIGSGDHAH
GSGLGPGSNGLGGGSQSAALASAFYRHNGPRKGDGGGQRSGRQTTHEDRH
HQKHFWMNMVVKEGQEARGGSGMMGLMGIYTPHEATTTPSISSESTASAY
QAVP

mRNA from alignment at CM002457.1:540847..542624-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1396 ID=rna1396|Name=rna1396|organism=Nannochloropsis gaditana|type=mRNA|length=1778bp|location=Sequence derived from alignment at CM002457.1:540847..542624- (Nannochloropsis gaditana)
CGCTCGTGACGTTGGCTCCCTCGGCGAGACCCGTTCCTGCTTCCATTTCA
TCGAGGACAAGTAAGAAGTCGACCTGATGGTCTTTCGTGATCATGGGGCT
TTATATCTGTGCCATAGCATTCTCTCGATGCGTGTCAACGGAGTGCTTTA
TAGCGTCTGTTCCTTGTATAAAGGGGCTTCGCTGAAGCCTGACTATGATG
GAACCTCACGGCTGTCTCATCATCACCTGCCAGTGCCTCCCCCTACTCTG
TTGCCTTTGATAAAGCACTCGGCAATGAGGGAATGGCTGCTGCTACCAGA
TGCAGCGCTTTTCCTTGGAGTTGCTGGCCTTTGCTTTTTAGAAAGAGTGC
GGTCGAAAGAAGACTCCGATATGGCCACTACCAGCGCCGGCATGGAGATG
CGTCGGCGCATCCAGCTTCTGCTACTAGTTGCCAATTTGACAAGGTATGG
CCGACGCCATGGACTTTTCAGGGAGTTGAGATCCGGGATGTGTGATAAAC
ATCAGTGCGGGTTGCGACTGGTGCTCGGAAGCATGGAATAGCGCGCCCCG
CACTCTTTTTCCTTGTTCCTCCTTGGGCCGGCTGAGACATCCTTACCTCC
TCGCTTTTTTCTCTTTCCCACAATTCTAGATGTGTATGCTTAATTGTGGA
GACCGCGCTTTTCGAAGCACACAATTGTCCTAGCCTCTGGACGTGTGCCG
TGGTGCGCTGTGTGCCCGACCTACTGTTCCTCACCACCTACAGCCTCCTC
CTCCTCTTCTGGGCTCAGCTGGGTCGCACCGCCAGAGGCGCGCCTTGTCC
CAGGCTCAATCTTATGTTCAGTCTGGGCAACGGCACGTTATACACAGGCT
TTCTCCTCATTGTCGCCATGGCAGCGGGAGACGTGCTATCGCACGGCGAG
GCCCTCCAATCCTTCTTCATGCTCCTGGGTCTGTCCTACCTGGTTTCCTT
CCTCTTCGTCCTCAAGTTTGCGCACCAATTCTCCCGCATGGCTCTTCCTT
ATCTCCTTCGCCGACGAGTACTAGCGCTCTCTCTCTTGTGCGGGACGGTG
TTTCTCGTACACATGATATACTATCTGAGTGTCGGCACGGGCTTGCTCGC
CTCCTGGCTCGCCAGGTCAGGGTATCCTCCCCGCCCGGAAGCCTACATTT
TCGACGCAATCCTGTACCCGCTTCAGGAGCTCCTTCCCTCTCTCGCCATC
CTGGCGGTCTTGAACCGGCGGAGGGGCCAGCTCCCTACTCCTCTCGCCGC
GGCTTATCCCTACCTGGGGGCGGGGCCCTATACCAAGATTGGCAGCGGCG
ATCATGCACACGGGTCAGGATTGGGGCCTGGGAGCAATGGCTTGGGAGGG
GGGAGTCAGTCGGCGGCGCTTGCAAGTGCTTTCTACAGGCACAACGGGCC
TAGGAAGGGAGACGGAGGGGGGCAGAGATCGGGCAGGCAGACAACTCACG
AGGATCGTCATCACCAGAAACACTTTTGGATGAATATGGTGGTGAAGGAA
GGTCAAGAGGCCCGAGGAGGAAGTGGAATGATGGGGTTGATGGGTATCTA
CACGCCTCACGAAGCCACGACGACTCCATCGATCAGCAGCGAGAGCACGG
CCTCAGCATACCAAGCCGTGCCGTAGGCGACAGCTGTACATCTTACCACT
TTGCCTTTTCGTAGCATGCTGTTTATATTTTAAATTAAAAGGAGAGTGCA
TCACAGACTTGTGAAGTAATTTTGAGCGTTGGTCAAAATGAAAGACGTAC
ATTTGCCACGACGAACAAGTCAGTCACA

Coding sequence (CDS) from alignment at CM002457.1:540847..542624-

>rna1396 ID=rna1396|Name=rna1396|organism=Nannochloropsis gaditana|type=CDS|length=2730bp|location=Sequence derived from alignment at CM002457.1:540847..542624- (Nannochloropsis gaditana)
ATGTGTATGCTTAATTGTGGAGACCGCGCTTTTCGAAGCACACAATTGTC
CTAGCCTCTGGACGTGTGCCGTGGTGCGCTGTGTGCCCGACCTACTGTTC
CTCACCACCTACAGCCTCCTCCTCCTCTTCTGGGCTCAGCTGGGTCGCAC
CGCCAGAGGCGCGCCTTGTCCCAGGCTCAATCTTATGTTCAGTCTGGGCA
ACGGCACGTTATACACAGGCTTTCTCCTCATTGTCGCCATGGCAGCGGGA
GACGTGCTATCGCACGGCGAGGCCCTCCAATCCTTCTTCATGCTCCTGGG
TCTGTCCTACCTGGTTTCCTTCCTCTTCGTCCTCAAGTTTGCGCACCAAT
TCTCCCGCATGGCTCTTCCTTATCTCCTTCGCCGACGAGTACTAGCGCTC
TCTCTCTTGTGCGGGACGGTGTTTCTCGTACACATGATATACTATCTGAG
TGTCGGCACGGGCTTGCTCGCCTCCTGGCTCGCCAGGTCAGGGTATCCTC
CCCGCCCGGAAGCCTACATTTTCGACGCAATCCTGTACCCGCTTCAGGAG
CTCCTTCCCTCTCTCGCCATCCTGGCGGTCTTGAACCGGCGGAGGGGCCA
GCTCCCTACTCCTCTCGCCGCGGCTTATCCCTACCTGGGGGCGGGGCCCT
ATACCAAGATTGGCAGCGGCGATCATGCACACGGGTCAGGATTGGGGCCT
GGGAGCAATGGCTTGGGAGGGGGGAGTCAGTCGGCGGCGCTTGCAAGTGC
TTTCTACAGGCACAACGGGCCTAGGAAGGGAGACGGAGGGGGGCAGAGAT
CGGGCAGGCAGACAACTCACGAGGATCGTCATCACCAGAAACACTTTTGG
ATGAATATGGTGGTGAAGGAAGGTCAAGAGGCCCGAGGAGGAAGTGGAAT
GATGGGGTTGATGGGTATCTACACGCCTCACGAAGCCACGACGACTCCAT
CGATCAGCAGCGAGAGCACGGCCTCAGCATACCAAGCCGTGCCGTAGATG
GTCTTTCGTGATCATGGGGCTTTATATCTGTGCCATAGCATTCTCTCGAT
GCGTGTCAACGGAGTGCTTTATAGCGTCTGTTCCTTGTATAAAGGGGCTT
CGCTGAAGCCTGACTATGATGGAACCTCACGGCTGTCTCATCATCACCTG
CCAGTGCCTCCCCCTACTCTGTTGCCTTTGATAAAGCACTCGGCAATGAG
GGAATGGCTGCTGCTACCAGATGCAGCGCTTTTCCTTGGAGTTGCTGGCC
TTTGCTTTTTAGAAAGAGTGCGGTCGAAAGAAGACTCCGATATGGCCACT
ACCAGCGCCGGCATGGAGATGCGTCGGCGCATCCAGCTTCTGCTACTAGT
TGCCAATTTGACAAGATGTGTATGCTTAATTGTGGAGACCGCGCTTTTCG
AAGCACACAATTGTCCTAGCCTCTGGACGTGTGCCGTGGTGCGCTGTGTG
CCCGACCTACTGTTCCTCACCACCTACAGCCTCCTCCTCCTCTTCTGGGC
TCAGCTGGGTCGCACCGCCAGAGGCGCGCCTTGTCCCAGGCTCAATCTTA
TGTTCAGTCTGGGCAACGGCACGTTATACACAGGCTTTCTCCTCATTGTC
GCCATGGCAGCGGGAGACGTGCTATCGCACGGCGAGGCCCTCCAATCCTT
CTTCATGCTCCTGGGTCTGTCCTACCTGGTTTCCTTCCTCTTCGTCCTCA
AGTTTGCGCACCAATTCTCCCGCATGGCTCTTCCTTATCTCCTTCGCCGA
CGAGTACTAGCGCTCTCTCTCTTGTGCGGGACGGTGTTTCTCGTACACAT
GATATACTATCTGAGTGTCGGCACGGGCTTGCTCGCCTCCTGGCTCGCCA
GGTCAGGGTATCCTCCCCGCCCGGAAGCCTACATTTTCGACGCAATCCTG
TACCCGCTTCAGGAGCTCCTTCCCTCTCTCGCCATCCTGGCGGTCTTGAA
CCGGCGGAGGGGCCAGCTCCCTACTCCTCTCGCCGCGGCTTATCCCTACC
TGGGGGCGGGGCCCTATACCAAGATTGGCAGCGGCGATCATGCACACGGG
TCAGGATTGGGGCCTGGGAGCAATGGCTTGGGAGGGGGGAGTCAGTCGGC
GGCGCTTGCAAGTGCTTTCTACAGGCACAACGGGCCTAGGAAGGGAGACG
GAGGGGGGCAGAGATCGGGCAGGCAGACAACTCACGAGGATCGTCATCAC
CAGAAACACTTTTGGATGAATATGGTGGTGAAGGAAGGTCAAGAGGCCCG
AGGAGGAAGTGGAATGATGGGGTTGATGGGTATCTACACGCCTCACGAAG
CCACGACGACTCCATCGATCAGCAGCGAGAGCACGGCCTCAGCATACCAA
GCCGTGCCGTAGATGGTCTTTCGTGATCATGGGGCTTTATATCTGTGCCA
TAGCATTCTCTCGATGCGTGTCAACGGAGTGCTTTATAGCGTCTGTTCCT
TGTATAAAGGGGCTTCGCTGAAGCCTGACTATGATGGAACCTCACGGCTG
TCTCATCATCACCTGCCAGTGCCTCCCCCTACTCTGTTGCCTTTGATAAA
GCACTCGGCAATGAGGGAATGGCTGCTGCTACCAGATGCAGCGCTTTTCC
TTGGAGTTGCTGGCCTTTGCTTTTTAGAAAGAGTGCGGTCGAAAGAAGAC
TCCGATATGGCCACTACCAGCGCCGGCATGGAGATGCGTCGGCGCATCCA
GCTTCTGCTACTAGTTGCCAATTTGACAAG

Synonyms

Publications