rna1395, rna1395 (mRNA) Nannochloropsis gaditana

Overview
Namerna1395
Unique Namerna1395
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3318
Alignment locationCM002457.1:539503..540537 -

Link to JBrowse

Properties
Property NameValue
ProductNADH:ubiquinone oxidoreductase, ESSS subunit
Orig transcript idgnl|cribi|Naga_100029g30.9527.mrna
Orig protein idgnl|cribi|Naga_100029g30.9527
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:539503..540537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g30gene1347Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1395rna1395-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29270.1cds1393Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1395 ID=rna1395|Name=rna1395|organism=Nannochloropsis gaditana|type=mRNA|length=3318bp
TACAGAGACACCACATCAAATGCACAATGTCTGCCAAATTATCTTCCCTT
TATGATGAGGCCTTCGCTGCACTGGGACGAGCCGTCGAGGTTGACGAAAC
ATTTGCGAAAGGGCGGCAACTTGAGGAGGAGGGGAGGATGGACGAGGAAG
ACAGGAGCAGGGTTGTGCTCCTGTATGAGGAGGCCCTTGACCTCTTCCAG
CAATGCTTCGACATGGAATCGGATATTACAAAGAAATCCGTGGTGGCAAG
CGAGTTGCGGACGTATGGAAGACGATTGGGAGCACTCAAAACGCAGACTG
GAGACAGGCGATGGGCCGCAGCAAAAGCGCTCGATGCGGCCAAAAGCAAG
GCATTTCCTCAAAAAGGAGACCAAGACGTCGCAGATATGTACCTTGGAGC
AGTGGAGGCATATCTTTCCGCTATAAAGCTTCAGGACCCAGAGTGTGCCG
AAAATGCAACGCTTCGGAGCCGGGTCGCGCACATTTTGGACCGCGTGGAA
AGCATAAAGAAGCACGATCCCCCACCTACTCCACATGAGAAGCGCCATTC
GTTGACCTGCGGCAGTCAAAACTCAGCTTCTACATGCCTTGACGTGCAGG
ACCTGCCTCTTCCGCCCACATCCGACTTGTCTTGCTTTCCCTCCGCACCC
TCCGCTACATTCTCCCCCTCCCACTGTGTCCGAGGGTCGAGCTCCAGCAA
CGGCAGTGGTCCTCCTCGTGACGACACTACGTCCTACTTGACACCCGCTG
AGGTGGAAGTTCTCCGCCGGAGCTCGGTGATCAAGGGGAGGACGTTCCTT
CCCTGGATGGAGGGCGAGGAGTCGCGGGAGCAGTTCCATTACGTAAAGCC
CTTCGCCGACCCCGATGGCCTCCTTTCCCTCTCACCCAAGCAAGCGGCGC
ACCTTGGAGGGTGGAAGCGCCCGCACGAGTTCATTAGAGGGCGCCCTGGC
TCCGACCAAGGTCCTCGTATGATTGGGAGCGTCACTCCCCACTCAATCAT
GCAAGAGCAGGTTTCCGACTGCTCCTTCGTTGCCTCTCTCTGCATATGTG
CCGCCTTCGAGCAACGTTTCCAAACCCAACTCATTACCAAGATAATATAC
CCCCAAGACGCGCGCGGCCGGCCCATGTACAACCCGAGTGGGAAGTACCT
CGTCAAGCTGTGGGCAAACGGGTGCGTACGAAAGGTGGTCGTGGACGATT
TCTTGCCTGTGGACCGGCACGGGAACCTGCTCTGCTCCTCCTCCTCGGAC
AGGACGGAGCTGTGGGTGAGCATCGTGGAGAAGGCGGCCATGAAGCTCTT
GGGCGGCTCCTACGACTTTCCGGGCAGCAACAGCGGCATCGACGTGTATA
TGCTGACGGGCTGGGTGCCCGAGCAAATCTTTTGGAGGGAAGAAGATCAG
GTGGACTTGACCAGCGCCAAGAGAACCGGTGCCGCACAAAAGGAGAGCAG
CGAGCGTGCCAGAGGCGGCACTGGTGGTGATCGTCCTCCCTTGATTCTAG
ACCACCGACAGCCTGCGGAGCGGGCGTGGGCCCGGCTCAGCTCGGCCTCG
GCGCTAGGAGATTGTCTGACCACCATCGCTACCACCCCCATGGATCCTGA
GGTCGCAGAGCGTCTGGGCCTGATCCCCTCCCACGCCTACGCCGTGCTAT
CCGTTCGGGAGGTGCTGGGGGGCCGCCGCTTTCTTCTGGTCAAGAACCCC
TGGCGACGCAAGAGCTGGCGCGGACCCTATTGCCCTGCTGACACGGCCCG
CTGGACGCCCGAACTCTGTGAGGCATTAGGATACGCCCCACTGCAGGCGC
AGAAGCACGACGACGGCGTGTGCTGGATAGCCTGGGAGGACGTTCGGCGC
TACTTTTCCTCCATCTTCCTGAACTGGAGGCCGAGTCTCTTCGCCTTCCG
CACCACCCACCACGCGCTGTGGCGCAAGGAGCAAGGTCCACCCAACGACC
TGTTCACGTACGGACAGAACCCACAATACTCTTTGCGGATGGACCGAAGC
AAATCCCGGGCCCCCGGTAGCACCAACGCCGGGACTGCCTGCTCCTCAGT
TTGGCTCCTGCTCTCACGACACACCAGGCAAACCTCGGACAGGCACGGCA
TGGACAGCAGCGGAGACAGCCGCTCATGCCACGAGGATTTCTTAACCCTG
CACGTGTACAAGTCGCGGGTCACCGGTGGAGGGCCTCGCCGCGTCATATA
CCCAAGCGATGACTGCGTTGTCCGGGGGCTGTACTCGAACAATCCGCATA
ACTTGGTCCGCTTCGACGTGGACAAGGGGGACCCTGGGGCCTATGTCCTG
GTCTTGTCGCAGTACGAAAAAAGGCGCGACGTCCGATTTTCGCTCAGTGT
CCTCTCGACCGCTCCATTCGTGCTGCAGGAGCTGCCAGCCTTGCCGGCTG
TGGTGGCCAAGATGGAGGGGACCTGGGGGCCTGAGACCGCGGGAGGCCGC
CTCGGGCTTGCGACGTTCCTGCTCAACCCGCAATTTGCGATCGCTGTCAA
GAAGCCGTGTGCGGTACATGTTGAATTGTTGGCGCCGAAGGAGTACTTTG
TGAGCTTCTCTCTGATAGGCGGGGCTCGGGGCGGGAAGCGTCTCGACTCA
ATCCTGCAGGGGGAAGAAGTATTGACCAGCGGATCCTATCGCCAAGGTTT
TTGTGCCGCCTCCACTAGCGATAGCCCGGGCCCCGCCGCGCTGCTACGTC
CAGGGATCTACACGCTTGTAGCCTCCACGTACGATGCTGGACTCAGGGGC
AACTTTGTGATCAATTTCCACAGTGCTGTTGACGAAGGGAGCCTCCAAGC
CAGTGTGCTGTTGCCGGAGGGCGAGGGCTTCGTCCGACATGAGCTTGGGG
GGGCGTGGAAAGGGGAGCTGACCGGGGGATGCAGCCCTCCGGGGTACGCG
GCTCGAAATCCAACATACGTACTTGCATGCACAGAGCGGACAAGGGTTTT
CATGCGGCTTGTTGCACATGAAAATGAGCCTATAAATGTCACCCTATTTC
AGCTGCCGTCGGCTTCGTCCGGCGGGGCCGCGGGTAGCAGTGAGCTTCCC
GTCCTGTCAACTTTTCCGGGATGTCCCTCAACAATCGCGACGTCTCATAA
TGCTGTTTTCACAGCAAGTCGATGTGGGGTTACAACACCAGTCGCAGACT
TGACCACAGGGACATACGCGGTAGTTCTGGCATGTTACGATGCCAACGTG
GAAGCAGCCTTCACACTCACTGTGTTCACCTCAAGCAAAGGCATGCGTCT
TAGGCAAATATTGTAAATTTAAACACGTGTGGAACTGTGTACAATACCTA
AAAAAGCATCGCGCGCAA
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protein sequence of rna1395

>rna1395-protein ID=rna1395-protein|Name=rna1395|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MLFAARSAATSALRRGLGHPQPHFVRHGARRMMGGGGHSPAPHPSQPKQA
FLFNEGPGPRKVEMWEPITSTVYWSAFLILVVGLYNAPETRIQEWAAEEA
EARLARIEEGKDVEYGHIYHKQLLTGGFVQHSAANADSPPEAEEEEEEEE
D
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mRNA from alignment at CM002457.1:539503..540537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1395 ID=rna1395|Name=rna1395|organism=Nannochloropsis gaditana|type=mRNA|length=1035bp|location=Sequence derived from alignment at CM002457.1:539503..540537- (Nannochloropsis gaditana)
CTCTCCACCTCCTTTTGGTTAGTCTCAAGACGACCACGAGTAGTCAATGG
ATGCTGCTCCTCGTGGTGGTCCTCCACTGGTGACATACCTTTCTCTTGCT
TGTTATATAGATGCCGCCGCACCGAGTCACACAACAACTTACACACCGGA
CAGGCCAACATGCTTTTTGCCGCACGCTCAGCGGCTACTTCAGCTTTACG
GCGTGGTCTGGGCCATCCACAGCCTCATTTCGTGCGACATGGGGCAAGAC
GAATGATGGGAGGAGGGGGGCACTCCCCAGCTCCGCATCCGTCGCAGCCC
AAACAAGCCTTTCTGTTTAACGAGGGTCCTGGCCCGCGAAAAGTAGAGAT
GTGGGAGCCAATTACGAGTACCGTGTACTGGTCTGCTTTCTTAATTCTGG
TCGTAGGGCTTTACAATGCTCCTGAGACACGCATTCAGGTATAGAAAGGG
GATTGGGATACGACACGGGGAGAAAAAAGATTGGAGCTCTGTACCAAGAA
TAGACGGCGACGAAATCATTCTCATCTTTGAGTTGGTGCGGTCCATTTCT
TATTCAACAAAGTCGATTCCTGGGCACACCGGCGTGATCTATAACCCTTC
CCACCGCGCATGGTATCCTTTGCTCAAGCCTTCTTCTTCAATACACGTTC
TTGTCACACACAGGAATGGGCAGCGGAAGAAGCAGAGGCAAGATTAGCAA
GGATAGAGGAGGGCAAGGACGTAGAGTACGGGCACATATACCACAAGCAA
CTCTTGACGGGAGGCTTTGTCCAGCATTCGGCCGCGAATGCTGACAGCCC
GCCGGAGGCAGAGGAGGAGGAGGAGGAGGAGGAGGACTGACGTCCACTTT
GTGATAGAAGAGACATACTGAAAGCACGTGGGATGGTGGAAATTTCGGGA
ATCGAGGGGGACACGGCATTTGCAAGGTCAATACGGCCCTTTGGTTGAGG
CGCGGTTTCTTGGAAATTTGTTTAGAATGGTGGGAGGAGAGCAGTAACAC
GTGAAAATAAAAAATGTGAGAAACACGTTGACTTT
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Coding sequence (CDS) from alignment at CM002457.1:539503..540537-

>rna1395 ID=rna1395|Name=rna1395|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002457.1:539503..540537- (Nannochloropsis gaditana)
GAATGGGCAGCGGAAGAAGCAGAGGCAAGATTAGCAAGGATAGAGGAGGG
CAAGGACGTAGAGTACGGGCACATATACCACAAGCAACTCTTGACGGGAG
GCTTTGTCCAGCATTCGGCCGCGAATGCTGACAGCCCGCCGGAGGCAGAG
GAGGAGGAGGAGGAGGAGGAGGACTGAATGCTTTTTGCCGCACGCTCAGC
GGCTACTTCAGCTTTACGGCGTGGTCTGGGCCATCCACAGCCTCATTTCG
TGCGACATGGGGCAAGACGAATGATGGGAGGAGGGGGGCACTCCCCAGCT
CCGCATCCGTCGCAGCCCAAACAAGCCTTTCTGTTTAACGAGGGTCCTGG
CCCGCGAAAAGTAGAGATGTGGGAGCCAATTACGAGTACCGTGTACTGGT
CTGCTTTCTTAATTCTGGTCGTAGGGCTTTACAATGCTCCTGAGACACGC
ATTCAGGAATGGGCAGCGGAAGAAGCAGAGGCAAGATTAGCAAGGATAGA
GGAGGGCAAGGACGTAGAGTACGGGCACATATACCACAAGCAACTCTTGA
CGGGAGGCTTTGTCCAGCATTCGGCCGCGAATGCTGACAGCCCGCCGGAG
GCAGAGGAGGAGGAGGAGGAGGAGGAGGACTGAATGCTTTTTGCCGCACG
CTCAGCGGCTACTTCAGCTTTACGGCGTGGTCTGGGCCATCCACAGCCTC
ATTTCGTGCGACATGGGGCAAGACGAATGATGGGAGGAGGGGGGCACTCC
CCAGCTCCGCATCCGTCGCAGCCCAAACAAGCCTTTCTGTTTAACGAGGG
TCCTGGCCCGCGAAAAGTAGAGATGTGGGAGCCAATTACGAGTACCGTGT
ACTGGTCTGCTTTCTTAATTCTGGTCGTAGGGCTTTACAATGCTCCTGAG
ACACGCATTCAG
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Synonyms
Publications