rna1392, rna1392 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1392
Unique Name	rna1392
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1954
Alignment location	CM002457.1:529958..531689 -

Link to JBrowse

Properties


Property Name	Value
Product	vamp-like protein ykt62
Orig transcript id	gnl\|cribi\|Naga_100029g33.9542.mrna
Orig protein id	gnl\|cribi\|Naga_100029g33.9542
Gene	SNR10
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:529958..531689 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SNR10	gene1344	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1392	rna1392-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29285.1	cds1390	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:529958..531689-
coding sequence from alignment at CM002457.1:529958..531689-

mRNA sequence

>rna1392 ID=rna1392|Name=rna1392|organism=Nannochloropsis gaditana|type=mRNA|length=1954bp
TCGCTTTCGCGTACTTTGTCGTTCGGATGGAAACCATCTCCAACTACATT
GTTGCGTCTTTTCGATTGCTCCACTCAGCTAGCCTCTCATCCGCACAAAA
AGGGACAGAAGTATCACCAGTGGCCCGTCCGTCATCTACGATGCATACTC
GCCCCTGCGCAGCAAGGAAAAGGCCTCGATCCTTCTCTCTCCCATTTCGT
CAGCTTTTGCTCGTTGCCGTGGCCGCAACTACAGGGATAGTTAGAACAGC
GCAGGCATTTATTCTGCCCAGCAGTAGCGTCAATCAGGCACTGCGTAGTG
CGCAAGTAATTCGCATGGGCAAGGGGGGGGGCGGGGGGATGGCAAAAAGA
GGTCAGAATTGCAAGAGGTCCTCGAGCGATACGAGCCGGTCGTCGGTGTA
GAGGTTCACGCCCAGCTCCTTTCCGACACGAAGGCATATTGCGGTTGCTC
AAGCCATTACAATCCTGACATTCCGAACGCTAACATATGCCCAGTGTGTA
CGGGAGAGCCTGGTACCTTGCCCGTTCCCAATGCGCGCGTGGTGGAATTG
GCAAGTAAAGCCGCAATGGCGTTGCAATGCGAGATTGCTCACGAAGTGCG
CTACGACCGAAAGAATTACTTCTACCCTGACACCCCTAAGAACTATCAGA
TCACTCAGTACACCCATCCCCTGGGGGCGGGGGGATGTTTGGAACTGCCG
AGCGGGAGGCGGGTATCCATCACGCGCTTGCACGTGGAGGAAGACTCGGC
GAAAATGGTCCATCAGGGAAGCGACAGCCTGGCGGGCTCCACGCACTCCC
TCGTCGACTTCAACCGTGCGGGCATTCCGCTGGCGGAAATCGTGTCGGAG
CCGGACATGCGCTCGGGGGCGGAAGCAGCGGAGTACGGCCGGGAGCTGCA
GAAGATTTTGCGGTACGTAGGGGCCTCGGACGGCAACATGGCGGAAGGCT
CCATGCGCCTGGACATCAACGTCTCGATCCGTCCCCGGGGCGAGGAGGGG
CTGCGGCCGAAGGTGGAGGTGAAGAACGTGAACTCGTTCAAGAGCGTGCA
GCAGGCGGTGGACTTCGAGGTAGTAAGACAGGCCCGGGCCTACGACGCGG
GAGAAGCGGTGCGGCAGGAGACCCGGATGTGGGACGAGAAGGAGCTCGCC
AGCAAGCTTATGCGTGTCAAGGAAGGCGAGTCCGACTACCGCTATTTCCC
CGAGCCCGACGTTCCCCCCCTAGCTCTGGCCTCATCCGTGGTGCAGGCCT
GGCGGGCGACGCTGCAGGAGCTCCCGGCCGCAAAGCGGGCGCGGTACCAG
GACCCTGCGGGTTTGAATTTGGACGCAGAGACAACCAAATTTCTGACCGA
CGATCTGGCGGTTGCCCGATTTTTTGAGGCGGCCGTGGAACAGCACGGGG
CGGAGCCAAAAGAGGCGGCGAAATGGCTCGTGGGGGACATCGCCGGACAT
TTGAACGGGAACAAAGGCAGGGTTAAGGAGTTCGGAAAGATCAAGCTCAC
GCCCGCGGGCCTGGCGGAGCTGGTGGGTCTGATTGGACAGGGGAAGATCA
CGGGAAAGATCGCGAAGGAGCTGCTGCCGGAGCTTTTGGATGAGTGGGAG
GGGGGGGAGGAGGGTGCAGTGCTGGATTTGGTCCAAGCCCGGGGCCTGGA
GGCGATCACCGACCCGGCCGTAATCGCCGCTTTGGTGCAGAAGGTCCTAG
AGGCGAATCCTGAGAAAGTGGAGGACTTCCGGGGGGGCAAGACGAAGCTG
CTTGGTTTCTTCGTGGGCATGGTGCTGAAGGAGTCTGGGAGCCGGGCGAA
TCCTGAGGTGGTCCAGTCTCTGACGGTGGAGGCCCTGAACGGGGCATGAG
CCGTTGGGAAGGAGCGAAGGATAGGGCTGGATCGCCTGTTTGAGTGCATA
ATTCTACACACAGGCATGTGGTAATCAAAGTAATCAGGGGAAACTTCCTT
CTTG

protein sequence of rna1392

>rna1392-protein ID=rna1392-protein|Name=rna1392|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLI
KRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLL
ERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDET
TDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS

mRNA from alignment at CM002457.1:529958..531689-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1392 ID=rna1392|Name=rna1392|organism=Nannochloropsis gaditana|type=mRNA|length=1732bp|location=Sequence derived from alignment at CM002457.1:529958..531689- (Nannochloropsis gaditana)
GGGCACACCTCTGCCATATTCCTACTTCTCATTGCACTCACTCCTCAGCT
CGTACTATAGGTCGGATCGTGCAGTGTGTCACCTGCCAAATTACCATCGC
TGACCCCTTTCTGGCCGCGTCGGCCCGCGTCATCCGCCTTCGCCTCATCC
CCTCACGCCCACTCCGCTTCTCGTCAGCATTAGACTTCTATGAAGATCGT
GGCCATTGCATTGCATCGCTACCAAAGGGACACCCCAGAGCCCATTATTC
TCTCGTCGGTCACTGAACTTGAGAGCTTCGGGTACTTCCAACGCAATGGG
TGAGTACAGCAACGGGATCATAAGAATGTTATTCTCATCCTGTTCAAAGA
TGTCATTGATTCTTCACATCAATCCGCAAACACAATAAAATAAATAGCAT
CCGTGAGATGTGTCGATTTATGAGCAAGACCTTGATCAAGCGCTGCCAGC
CCGGACAAAGGCAAACCATCCAGCACGAGGGTAGGCCGGGCTCGGGGAGC
GTAGGTGATGGGTTGCGTCGCGTTTGGAGGCCACCGTCTTTCGACCTCAC
CACCTTCTCTTCCGCACAACGTTTACAGAATATAATGTACACTGCCATTT
AAGGACAGATGGTTTGGGTGGCACCGTCATAGCGGATCTAGAATATCCTC
CCCGCGTTGCCTTCGTCCTCTTGTCGACCCTCCTGGAACGTTTTGCCGTT
GATATCACGTACGTGGCCATCTGGAGGCGGTGTACGCGCCATAAACTCGT
TTACAATAGCAACGTGGGCTGAATTACTGTGACGTGGGCGAACTTGAGAT
CTCTTTGGCGGCCTACATTAGTCATCCTGTCCTATGTCATCTGCTGTTGT
TTCCAAGCTGTGACCAACATGTCTTTTTCCCTTCCTGCTCGCATATTGGT
ACAGAAATTGGTCATCTGTGACACAGCAAGAGTCCGTGACGTATCCTCCC
CTGCAAGAGGCCATCCGCGAGTATCAAGACCCGGCCAAAGCGGACAAGAT
TACAAAGATCCGGCGGGACCTGGACGAGACCACGGACATCTTGGTACGGA
GGGAGCTTGCAGGGGGGCGGGGGTGGGAAGGCGTTCCAGGCGCTAGGCAT
GGAGGAAAGGCAGTCGTAGACGCGTACTTATGTACCACACCTCACAGCAT
AAGACCATTGACGCGGTCTTGGAGCGCGGGGTCAAGCTGGACGAGCTGGT
GGAGCGGTCCAACGACCTGAGCAGTCAGAGCAAGCTCTTTTACAAGCAAG
CGCGCAAGACCAATTCCTGCTGCAGCATCTCTTGAGGAGACAGGGCGGTG
TCGGAGTGCAAGGGGGAAGGAAACATTGGGAGGATGGGGGGGGGGGGCGC
CATACGCCGAAGAGTCTCCCTTACGTCTGAATACTCTCTTCGCTAGCTCT
TGGGTGTGTGGGTCCGGAGAGCAAGCAGCAGGCGAAGGAAGTCATTTTTT
TGTTGTCCTGAACAATGTGTACATGCCAAGGCCTATCGGTAGCAAAATAG
AGGCCTCGAGGTGTCAAAGTAAAACCTTGGATTGAGGTACGACAGCGGCT
ATAAGGGAGTGGGGGGGGCATACTGGCCATGGAGGAAGACGCCACCTTGG
ATTTGCGGATGCTGGGGCGCTTCTATCTCGGTAACACAGCAGATAGAAGC
AGGAGGGAGGGTGTGTACGGATACCGAGGGCCTTCAATATAGGACGGAAG
AAAATGAACGGAAACAAGAAGGAAGTTTCCCC

Coding sequence (CDS) from alignment at CM002457.1:529958..531689-

>rna1392 ID=rna1392|Name=rna1392|organism=Nannochloropsis gaditana|type=CDS|length=3000bp|location=Sequence derived from alignment at CM002457.1:529958..531689- (Nannochloropsis gaditana)
CATAAGACCATTGACGCGGTCTTGGAGCGCGGGGTCAAGCTGGACGAGCT
GGTGGAGCGGTCCAACGACCTGAGCAGTCAGAGCAAGCTCTTTTACAAGC
AAGCGCGCAAGACCAATTCCTGCTGCAGCATCTCTTGAAAATTGGTCATC
TGTGACACAGCAAGAGTCCGTGACGTATCCTCCCCTGCAAGAGGCCATCC
GCGAGTATCAAGACCCGGCCAAAGCGGACAAGATTACAAAGATCCGGCGG
GACCTGGACGAGACCACGGACATCTTGAATATAATGTACACTGCCATTTA
AGGACAGATGGTTTGGGTGGCACCGTCATAGCGGATCTAGAATATCCTCC
CCGCGTTGCCTTCGTCCTCTTGTCGACCCTCCTGGAACGTTTTGCCGTTG
ATATCACCATCCGTGAGATGTGTCGATTTATGAGCAAGACCTTGATCAAG
CGCTGCCAGCCCGGACAAAGGCAAACCATCCAGCACGAGGATGAAGATCG
TGGCCATTGCATTGCATCGCTACCAAAGGGACACCCCAGAGCCCATTATT
CTCTCGTCGGTCACTGAACTTGAGAGCTTCGGGTACTTCCAACGCAATGG
CATAAGACCATTGACGCGGTCTTGGAGCGCGGGGTCAAGCTGGACGAGCT
GGTGGAGCGGTCCAACGACCTGAGCAGTCAGAGCAAGCTCTTTTACAAGC
AAGCGCGCAAGACCAATTCCTGCTGCAGCATCTCTTGAAAATTGGTCATC
TGTGACACAGCAAGAGTCCGTGACGTATCCTCCCCTGCAAGAGGCCATCC
GCGAGTATCAAGACCCGGCCAAAGCGGACAAGATTACAAAGATCCGGCGG
GACCTGGACGAGACCACGGACATCTTGAATATAATGTACACTGCCATTTA
AGGACAGATGGTTTGGGTGGCACCGTCATAGCGGATCTAGAATATCCTCC
CCGCGTTGCCTTCGTCCTCTTGTCGACCCTCCTGGAACGTTTTGCCGTTG
ATATCACCATCCGTGAGATGTGTCGATTTATGAGCAAGACCTTGATCAAG
CGCTGCCAGCCCGGACAAAGGCAAACCATCCAGCACGAGGATGAAGATCG
TGGCCATTGCATTGCATCGCTACCAAAGGGACACCCCAGAGCCCATTATT
CTCTCGTCGGTCACTGAACTTGAGAGCTTCGGGTACTTCCAACGCAATGG
CATAAGACCATTGACGCGGTCTTGGAGCGCGGGGTCAAGCTGGACGAGCT
GGTGGAGCGGTCCAACGACCTGAGCAGTCAGAGCAAGCTCTTTTACAAGC
AAGCGCGCAAGACCAATTCCTGCTGCAGCATCTCTTGAAAATTGGTCATC
TGTGACACAGCAAGAGTCCGTGACGTATCCTCCCCTGCAAGAGGCCATCC
GCGAGTATCAAGACCCGGCCAAAGCGGACAAGATTACAAAGATCCGGCGG
GACCTGGACGAGACCACGGACATCTTGAATATAATGTACACTGCCATTTA
AGGACAGATGGTTTGGGTGGCACCGTCATAGCGGATCTAGAATATCCTCC
CCGCGTTGCCTTCGTCCTCTTGTCGACCCTCCTGGAACGTTTTGCCGTTG
ATATCACCATCCGTGAGATGTGTCGATTTATGAGCAAGACCTTGATCAAG
CGCTGCCAGCCCGGACAAAGGCAAACCATCCAGCACGAGGATGAAGATCG
TGGCCATTGCATTGCATCGCTACCAAAGGGACACCCCAGAGCCCATTATT
CTCTCGTCGGTCACTGAACTTGAGAGCTTCGGGTACTTCCAACGCAATGG
CATAAGACCATTGACGCGGTCTTGGAGCGCGGGGTCAAGCTGGACGAGCT
GGTGGAGCGGTCCAACGACCTGAGCAGTCAGAGCAAGCTCTTTTACAAGC
AAGCGCGCAAGACCAATTCCTGCTGCAGCATCTCTTGAAAATTGGTCATC
TGTGACACAGCAAGAGTCCGTGACGTATCCTCCCCTGCAAGAGGCCATCC
GCGAGTATCAAGACCCGGCCAAAGCGGACAAGATTACAAAGATCCGGCGG
GACCTGGACGAGACCACGGACATCTTGAATATAATGTACACTGCCATTTA
AGGACAGATGGTTTGGGTGGCACCGTCATAGCGGATCTAGAATATCCTCC
CCGCGTTGCCTTCGTCCTCTTGTCGACCCTCCTGGAACGTTTTGCCGTTG
ATATCACCATCCGTGAGATGTGTCGATTTATGAGCAAGACCTTGATCAAG
CGCTGCCAGCCCGGACAAAGGCAAACCATCCAGCACGAGGATGAAGATCG
TGGCCATTGCATTGCATCGCTACCAAAGGGACACCCCAGAGCCCATTATT
CTCTCGTCGGTCACTGAACTTGAGAGCTTCGGGTACTTCCAACGCAATGG
CATAAGACCATTGACGCGGTCTTGGAGCGCGGGGTCAAGCTGGACGAGCT
GGTGGAGCGGTCCAACGACCTGAGCAGTCAGAGCAAGCTCTTTTACAAGC
AAGCGCGCAAGACCAATTCCTGCTGCAGCATCTCTTGAAAATTGGTCATC
TGTGACACAGCAAGAGTCCGTGACGTATCCTCCCCTGCAAGAGGCCATCC
GCGAGTATCAAGACCCGGCCAAAGCGGACAAGATTACAAAGATCCGGCGG
GACCTGGACGAGACCACGGACATCTTGAATATAATGTACACTGCCATTTA
AGGACAGATGGTTTGGGTGGCACCGTCATAGCGGATCTAGAATATCCTCC
CCGCGTTGCCTTCGTCCTCTTGTCGACCCTCCTGGAACGTTTTGCCGTTG
ATATCACCATCCGTGAGATGTGTCGATTTATGAGCAAGACCTTGATCAAG
CGCTGCCAGCCCGGACAAAGGCAAACCATCCAGCACGAGGATGAAGATCG
TGGCCATTGCATTGCATCGCTACCAAAGGGACACCCCAGAGCCCATTATT
CTCTCGTCGGTCACTGAACTTGAGAGCTTCGGGTACTTCCAACGCAATGG

Synonyms

Publications