EWM29285.1, cds1390 (CDS) Nannochloropsis gaditana

Overview
NameEWM29285.1
Unique Namecds1390
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:531391..531500 -
Alignment locationCM002457.1:531210..531292 -
Alignment locationCM002457.1:530982..531111 -
Alignment locationCM002457.1:530647..530785 -
Alignment locationCM002457.1:530405..530542 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29285.1
Productvamp-like protein ykt62
Orig transcript idgnl|cribi|Naga_100029g33.9542.mrna
GeneSNR10
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:531391..531500 -
CM002457.1supercontigCM002457.1:531210..531292 -
CM002457.1supercontigCM002457.1:530982..531111 -
CM002457.1supercontigCM002457.1:530647..530785 -
CM002457.1supercontigCM002457.1:530405..530542 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR010908Longin_dom
IPR001388Synaptobrevin
Homology
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|585111808|gb|EWM29285.1| (vamp-like protein ykt62 [Nannochloropsis gaditana])

HSP 1 Score: 414.461 bits (1064), Expect = 1.104e-146
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
            MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS
Sbjct:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|298715662|emb|CBJ28188.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 295.434 bits (755), Expect = 1.179e-99
Identity = 133/199 (66.83%), Postives = 168/199 (84.42%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
            MK+V+I   RY RDT EP++LS V EL S+G+FQR GI+EMC F SKT++KR QPGQRQ++QHE+YNVH ++R DGL GTV ADLEYPPRVAFVLL+ LLE++A  ++ W S  + E++ +PP+ + I +YQDPAKADKITKI+RDLDETT++LH+TID VLERGV+LDELV+RS+DLS QSK+FYKQARKTNSCC +S
Sbjct:    1 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVS-WQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 198          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|1210512182|dbj|GAX28755.1| (synaptobrevin homolog YKT6 [Fistulifera solaris])

HSP 1 Score: 270.011 bits (689), Expect = 1.714e-89
Identity = 124/200 (62.00%), Postives = 159/200 (79.50%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITN-WSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
            MK+V +A+ R   D  EP+ L+  TEL SFG+FQR  ++EM  F++KT +KR +PGQRQ+++HE Y VHC++R+DGLGGTV  D EYP RVAFV+L  LL+ FA    + W +VT  ESVT+PP  E +++YQ+PA+ADKITKI++DLDETT ILHKTID+VLERGVKLD LVE+SNDLS+QSKLFYK A+KTNSCC +S
Sbjct:    1 MKVVGLAIVRTGSDLNEPVPLTVATELSSFGFFQRQSVKEMLMFLTKTFMKRTEPGQRQSVEHEGYVVHCYVRSDGLGGTVTTDGEYPARVAFVMLGQLLDEFAQKQGDSWKTVTTPESVTFPPADEYLQKYQNPAEADKITKIQKDLDETTQILHKTIDSVLERGVKLDNLVEKSNDLSAQSKLFYKSAKKTNSCCVVS 200          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|1210523153|dbj|GAX18204.1| (synaptobrevin homolog YKT6 [Fistulifera solaris])

HSP 1 Score: 269.626 bits (688), Expect = 2.805e-89
Identity = 124/200 (62.00%), Postives = 159/200 (79.50%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITN-WSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
            MKIV +A+ R   D  EP+ L+  TEL SFG+FQR  ++EM  F++KT +KR +PGQRQ+++HE Y VHC++R+DGLGGTV  D EYP RVAFV+L  LL+ FA    + W +VT  ESV++PP  E +++YQ+PA+ADKITKI++DLDETT ILHKTID+VLERGVKLD LVE+SNDLS+QSKLFYK A+KTNSCC +S
Sbjct:    1 MKIVGLAIVRTGSDLNEPVPLTVATELSSFGFFQRQSVKEMLMFLTKTFMKRTEPGQRQSVEHEGYVVHCYVRSDGLGGTVTTDGEYPARVAFVMLGQLLDEFAQKQGDSWKTVTTPESVSFPPADEYLQKYQNPAEADKITKIQKDLDETTQILHKTIDSVLERGVKLDNLVEKSNDLSAQSKLFYKSAKKTNSCCVVS 200          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|1072237632|gb|OEU22359.1| (snare-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 265.774 bits (678), Expect = 7.167e-88
Identity = 125/200 (62.50%), Postives = 157/200 (78.50%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITN-WSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
            MK++A++  R   + P+PII     EL SFG+FQR  I+EM  F++KT +KR +PGQRQ+I HE Y VHC++R+DGLGGTVI D EYP RVAFVLLS +L+ F   + + W + T  ES+T+P L+E + +YQDP+ ADKITKI+ DLDETT ILHKTID+VLERGVKLD LVERSNDLS+QSK+FYKQA+KTNSCC IS
Sbjct:    1 MKLLALSTVRTGNELPDPIIACFEAELSSFGFFQRPTIKEMLSFLTKTFMKRTEPGQRQSITHEGYVVHCYIRSDGLGGTVITDEEYPARVAFVLLSQILDEFTTSVGDTWKTCTVHESMTFPALKEYLTKYQDPSAADKITKIQNDLDETTQILHKTIDSVLERGVKLDNLVERSNDLSAQSKMFYKQAKKTNSCCVIS 200          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|219123449|ref|XP_002182037.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406638|gb|EEC46577.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 257.684 bits (657), Expect = 1.239e-84
Identity = 120/200 (60.00%), Postives = 155/200 (77.50%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITN-WSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
            MK+V +A+ R   D  EPI L+   +L SFG+FQR  ++EM  F++KT  KR +PGQRQ+++HE Y VHC++R DGLGGTV  D EYP RVAFVLL  LLE F  +  + W +VT  ESV +   +E +++YQ+PA+ADK+TKI++DLDETT ILHKTID+VLERGVKLD LV++SNDLS+QSK+FYKQA+KTNSCC IS
Sbjct:    1 MKVVGLAVVRTGSDLNEPIPLTVSNDLSSFGFFQRQSVKEMLMFLTKTFTKRTEPGQRQSVEHEGYVVHCYVRADGLGGTVTTDQEYPARVAFVLLGQLLEDFTNEHGDSWKTVTTPESVVFTKAEEYLQKYQNPAEADKVTKIQKDLDETTQILHKTIDSVLERGVKLDSLVDKSNDLSAQSKMFYKQAKKTNSCCVIS 200          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|635371194|emb|CCI40594.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 248.44 bits (633), Expect = 5.351e-81
Identity = 117/199 (58.79%), Postives = 151/199 (75.88%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDIT-NWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSI 198
            MKIVAI L R  +D  +P+IL++  EL SFGYFQR+G+REM  F S+T IKR Q GQRQ+IQHEEY  H +++ DGL G V+ D EYPPRVAF LL+ L+E +  ++  +W S T      +PPL +A+ +YQDP+KADKI+ I+++LDETT IL KTID VLERG KLD+LV +S DLS+QSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDKDGQDPLILAAAYELSSFGYFQRSGVREMINFFSRTFIKRSQAGQRQSIQHEEYTCHVYVKADGLSGIVVTDQEYPPRVAFALLNKLMESYHTELNGSWKSHTGNPK-DWPPLGKAVTDYQDPSKADKISAIQKELDETTAILSKTIDNVLERGEKLDDLVNKSQDLSNQSKVFYKQAKKTNSCCVV 198          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|695457282|ref|XP_009537159.1| (hypothetical protein PHYSODRAFT_356041 [Phytophthora sojae] >gi|348667768|gb|EGZ07593.1| hypothetical protein PHYSODRAFT_356041 [Phytophthora sojae])

HSP 1 Score: 243.817 bits (621), Expect = 2.933e-79
Identity = 120/199 (60.30%), Postives = 148/199 (74.37%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVT-YPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSI 198
            MKIVAI L R      +P ILS+  E+ SFGYFQR+G+REM  F S+T +KR +PGQRQ+IQHEEYN H ++R DGL G V+ D EYPPRVAF LL+ L++ F  D TN    TQ  S   + PL  A+ EYQDP+KADKI+ I+++LDETT +L KTID VLERG KLD+LV +S DLSSQSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDGQGQDPTILSAGFEVSSFGYFQRSGVREMINFFSRTFVKRTEPGQRQSIQHEEYNCHVYVRRDGLAGIVVCDQEYPPRVAFALLNKLMDEF--DKTNSGWKTQSGSPQEFAPLTTALAEYQDPSKADKISAIQKELDETTAVLSKTIDNVLERGEKLDDLVSKSQDLSSQSKVFYKQAKKTNSCCVV 197          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|1214710693|gb|OWZ21759.1| (Synaptobrevin [Phytophthora megakarya])

HSP 1 Score: 240.35 bits (612), Expect = 9.409e-78
Identity = 114/198 (57.58%), Postives = 143/198 (72.22%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSI 198
            MKIVAI L R      +P+ILS+  E+ SFGYFQR+G+REM  F S+T IKR +PGQRQ+IQHEEYN H ++R DGL G V+ D EYPPRVAF LL+ L++ +                 + PL  A+ EYQDP+KADKI+ I+++LDETT +L KTID VLERG KLD+LV +S DLSSQSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDGQGQDPMILSAGFEVSSFGYFQRSGVREMINFFSRTFIKRTEPGQRQSIQHEEYNCHVYVRRDGLAGIVVCDQEYPPRVAFALLNKLMDEYDKSTGGSWKTQSGNPQEFAPLTTALAEYQDPSKADKISAIQKELDETTAVLSKTIDNVLERGEKLDDLVSKSQDLSSQSKVFYKQAKKTNSCCVV 198          
BLAST of EWM29285.1 vs. NCBI_GenBank
Match: gi|301110090|ref|XP_002904125.1| (synaptobrevin-like protein [Phytophthora infestans T30-4] >gi|262096251|gb|EEY54303.1| synaptobrevin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 239.195 bits (609), Expect = 2.023e-77
Identity = 119/201 (59.20%), Postives = 147/201 (73.13%), Query Frame = 0
Query:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDI-TNWS--SVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSI 198
            MKIVAI L R      +PIILS+  E+ SFGYFQR+G+REM  F S+T IKR +PGQRQ+IQHEEYN H ++R DGL G V+ D EYPPRVAF LL+ L++ +      NW   S   QE   +  L  A+ EYQDP+KADKI+ I+++LDETT +L KTID VLERG KLD+LV +S DLSSQSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDGQGQDPIILSASFEVSSFGYFQRSGVREMINFFSRTFIKRTEPGQRQSIQHEEYNCHVYVRRDGLSGIVVCDQEYPPRVAFALLNKLMDEYDKSTGGNWKTQSGNPQE---FAALTTALAEYQDPSKADKISAIQKELDETTAVLSKTIDNVLERGEKLDDLVSKSQDLSSQSKVFYKQAKKTNSCCVV 198          
The following BLAST results are available for this feature:
BLAST of EWM29285.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111808|gb|EWM29285.1|1.104e-146100.00vamp-like protein ykt62 [Nannochloropsis gaditana][more]
gi|298715662|emb|CBJ28188.1|1.179e-9966.83Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|1210512182|dbj|GAX28755.1|1.714e-8962.00synaptobrevin homolog YKT6 [Fistulifera solaris][more]
gi|1210523153|dbj|GAX18204.1|2.805e-8962.00synaptobrevin homolog YKT6 [Fistulifera solaris][more]
gi|1072237632|gb|OEU22359.1|7.167e-8862.50snare-like protein [Fragilariopsis cylindrus CCMP1... [more]
gi|219123449|ref|XP_002182037.1|1.239e-8460.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|635371194|emb|CCI40594.1|5.351e-8158.79unnamed protein product [Albugo candida][more]
gi|695457282|ref|XP_009537159.1|2.933e-7960.30hypothetical protein PHYSODRAFT_356041 [Phytophtho... [more]
gi|1214710693|gb|OWZ21759.1|9.409e-7857.58Synaptobrevin [Phytophthora megakarya][more]
gi|301110090|ref|XP_002904125.1|2.023e-7759.20synaptobrevin-like protein [Phytophthora infestans... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1392rna1392Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications