rna1386, rna1386 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1386
Unique Name	rna1386
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2340
Alignment location	CM002457.1:504077..505804 -

Link to JBrowse

Properties


Property Name	Value
Product	trna guanosine-2 -o-methyltransferase trm13
Orig transcript id	gnl\|cribi\|Naga_100029g38.9554.mrna
Orig protein id	gnl\|cribi\|Naga_100029g38.9554
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:504077..505804 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100029g38	gene1339	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29297.1	cds1384	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1386	rna1386-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:504077..505804-
coding sequence from alignment at CM002457.1:504077..505804-

mRNA sequence

>rna1386 ID=rna1386|Name=rna1386|organism=Nannochloropsis gaditana|type=mRNA|length=2340bp
TGGAAGCATGGAGCAAGGTGTCGTCAAAAAGTTGCTGGCGGCACAAGTTG
ACGACGGTGAGGAAGGACAGACGAATGGAGTCCTCCAGCACTATGCGTAC
AGAGCAATTGCTTTTGCTGAGCGTTTTCTAACGAGCAATCCGCCATGTCT
AAAGCAAGCGGGACGGTGGTTCCACACAGCGCTTGTCTTCTTGGAGGTTC
TTAAGGCTGGAGCGCGTAAGGAGTTCACTGACGAGCTCGAACGCGTACGA
TTATACGCATCTGAGAAGACACGGATGTACAGCCATTTGTTGGGAAATCT
TGTTCCACTCAATGCAGACAAGGATGTACGAGACTTGTATGACTTTGAGG
ACGACAAGCCCGCCTTGGGACAAGGATCCTACGGCGTCGTCATTAAGGCT
ACGCACAAGCAGACAGGGCAGCATTTTGCGTGCAAGATCCTCTTTGTAAA
TCGCACTATAACAAACAGCGCAAAGGAAATCACAAAACTTCATAGCGAAG
TGTCGATCATGCGAGAATTGGACCACCCTCACATTGTCCGGTTACGTGAG
GTATTCTACGCCCGCCGACGGATCTACATGATCATGGACTTGTGCACCGG
GGGGAATCTGCTGGACTTTATGAAACAAAACCCTAACAGACCAGATTCTG
AACCTATGGCCCAGGATTTTCTTCGACAGATGCTCTATGCTCTCAAATAC
TTGCATGAGCACCAGATTGTCCACAGGGACCTGAAGTTGGAAAACTGGCT
TCTCCAGTCTCGCCACCAAAACCGACAGCTCAAGCTGATCGATTTCGGCC
TCTCGAAGTTCTTTAATAAGAACGAAACGATGATGCAATCTGTTGGCTCT
TTATACTACGTTGCGCCCGAAGTATTGGAAAATGGCTACTCAGAGGCGTG
TGACATGTGGTCCATTGGGGTTATCGCCTACATGCTTTTATTCGGTCGTC
CCCCTTTCTGGGGTAGTAATAATGACCAGATGCGCTCTCGAATCAGAAAT
GCTCAATTTTCCTTCCCCCCCGATCTTCGCGTCTCGAACTCTGCCAAGGA
GTTTGTGCGGCGTTTATTGATAAAGGACACGAAGCAACGCATGACTGCTC
ACGAGGCCCTGAACCACTTTTTCCTCGCTGAGGCTCCTGCCAAAGGGACC
GACTGCGGGAATGCTCCACATACTCTGCTATCACGGCAGAAAAGGCTGCC
ATCTCTACACGTTGGCTCTTCTTCCTCCGTCAACTCATCCAGCCCCTCAG
CAGGTCCTTCCGTTGATGCCCTCTCCGAAGACGCTGAAGAACAAGATATC
GTAACCGTGCCCCCCGACCAAGTCTTGAGCTCATTAGTGGAGTACAGTGC
ATTCGGTACCCTGAAGCGGCTCATTCTAGAAGTGATCGCATTCAATTTGA
CCCCCTCTCAAATTCAAGACATGGGGCAAGCCTTTCGCGCTATTGACAAG
AAACAAAAGGGCACAATATCTTTGGAAGACATAAAGGGGTATTTAATGAA
CGAGGAAAAGGAAGTTCTCATTCCGATGGGGATCGAAGCGCAAATGAACG
CGGTCGAGAAGGTCTTAACCGAGCACACGGCACATCATGAAATCAATTAT
AACGATTTTGTGGCCGCTATTATGTGGCGGCGCATCCAGTACGATGAGGA
GAAAATGCAGGTCGTCTTCGAGGCTCTCGACGTACATCGACAGGGTTTCC
TTACGCCCGAGAGTATCCGGCAGGTTGTAGGTTTGGATAAGAAGCAGGAA
GAGATTGATCGTATGTTTGCGGAGGCAGACGTCAACAATGACGGCTGCAT
AGATTACACTGACTTCGCAAAGAGTTGGAAGCGCTATGTCGTGGACGTAC
AATATGCACCAATGGTGGAAAAGATTCGCCAAGAGTTCAGCGACAGACCC
GTCGCTAGGCCCGAAGGAAGTCAAAGAAACACGTCTTGCGCCACGAACCG
CACCAGTGGCACCATCATCGACACCATCGGCGCTGCTCAGACAGGTATTG
GCGCAGATATTGCAACTCTACCTAGTGGAGCCCCCCCCGTTGAAGACATC
CAAGTGATGTCTTCTAGCGTTCAGTCCCCTGACGTGCTCGCTCGTGCTGG
AACTCCGAATGCAGACAGCAAACAAGCCATCTGCACGAGCCATAAAAGAA
AGCGCTTCGAGATCGCAACTGAAGCAGCCTAAATACATAAATTACATATG
TAGCAAAAATTATCAAATAGGTAAAGCAAGTTTAAAAGACAAGATGGAAA
ATACTGCAAATCATGAAATGCTGCGTGCTTTTAGTAGCAGATTTGACGTC
ATTTCGTGAATAATTCAAATAACACAAGTATTTTTTAAAG

protein sequence of rna1386

>rna1386-protein ID=rna1386-protein|Name=rna1386|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MEDSKETRTPSEAVIPPSPLTGTDIGLKIRCPPKQDRCAFFLKRKLRFCT
VPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHT
VYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVD
EVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSES
KARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARV
VLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSP
LVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEG
ATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWE
NDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSC
EEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDA
YTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVS
PENSCILAWTPINEEEAENFRNVEL

mRNA from alignment at CM002457.1:504077..505804-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1386 ID=rna1386|Name=rna1386|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp|location=Sequence derived from alignment at CM002457.1:504077..505804- (Nannochloropsis gaditana)
ATGGAGGACAGTAAAGAGACCAGGACGCCCTCTGAAGCTGTCATACCTCC
CTCGCCTTTGACAGGGACGGACATCGGCCTTAAGATCCGTTGCCCCCCCA
AACAGGATCGTTGTGCTTTTTTTCTTAAGAGAAAGTTGCGCTTTTGCACG
GTTCCAAGACTTCCAACTTCAAAGTGGTGTGGAAATCATCAACATTTGGA
GGCAGGATATGAGAATTGTGCCGCAGCAGCACGTAGCAAGACACAAGAAA
AGCGGGGTGGGCAACGTCGAGTGCCTTGTCCCTTAGACTCGAATCACACT
GTGTATGAAAGGGAATTAAGTGCACACCTCCGCGTCTGCAACGTCAAGAG
GGAACAAAAATTCCTGGAGGATAAACCATTCTACCGCAGAAGCATCAACA
GCGGGAGTCTCAGGCGCCCAGGTTTAAATCCTCAGCCTCTTGACGTTGAC
GAGGTGCCTGCAATTTTAGCCCGAATTCGAGGATTGCAGCATCAAAAACA
ATCGCATCCGCGAGGGGAAGAAGTGGAGCAAATTACGAGCGGTCCGGTGG
CAGAGAAGATCCTTGCGACCATGGTGGCCAAAAACTGGACCAGTGAAAGC
AAAGCAAGGCATTTGGTGCAGCAAGCTTCCCTGATCTCGCACCTCCACCG
GCGTGGCCTCCTGGGTGCTCGCAGCACGTGCGTGGAGCTAGGGGCAGGTC
GGGGTACGCTGGGACATGCTGTGCACCAGGCGTTCCCCGAGGCCCGCGTG
GTGCTGGTCGAGCGCGCGGGTGTCAGGCTGAAAGCCGACGCTCCTTACAG
GCGGACGGGGGAGGGAGGCGTCTTTGCCCGATACCGCCTCGACATACGAG
ACTTGTGGATAAACGGCTTGCCGCTCGGACCTGGGGGGCTGACTTCTCCC
CTCGTCTTCATGGGGAAGCACGTCTGCGGGGTGGCCACGGACCTGTCGCT
GCGTGCCGTAGCCGACTATGTCCGAGACTTCGAAGGTAGCAAGGAGGAGG
GGGCAGCGGGAGAGGGGCCGTGTGAGCAAGCGCCGCGGCTGGGGGAGGGG
GCGACCATAGTAGGGCAGGATGAGATGGGTTCCCCTCGAGCACAGAATGC
TTCGAAAGGGAAGAGAAGGGCAAGGGTAGGGCTGGTGATCGCCACCTGCT
GCTACCACGTCTGTCGGTACGAGGACTACGTGGGGGTCGAGGCGTGGGAG
AATGACTTGGGGCTGGGTCGTGAGGAGTTCGAGGTGGCGCAGCGCAGCGC
GTGTTGGGTGTCATCCTTGACTAGCGCCCGGGGGCACCGATACAAGCCTC
GGCTCCGGGAAGAGGGGAAAGCGGGGCGAGAGTCGTACGCAGACAGTTGT
GAGGAAGAGGAGACGGGGGCGGAAGGTGAAGGGGGTGTGGAGGACGATAG
GGGCGTGCGGGGGCAGAGGGAAGAGACTGTGCGGCGGACGAGCGGCGATG
CGGGAGGGGAGCAAGTCGGAGGCCGGCGGCAGGCGGAAATGGATGATGCC
TACACCTCCTTGGGAAAGGGCCTGAGCCGCGATCAAAAGATTCAAATTGG
GCGGGCATGCAAGCGCCTCATCGATTACGGACGGCTAGCATATCTGCGGG
CTTCGGGTTTGGAGGCTGAGTGCCTCTTGTACTGTGAACCTGATGTGTCC
CCAGAGAACTCGTGTATACTTGCTTGGACACCTATCAATGAAGAGGAAGC
GGAAAATTTCAGGAATGTCGAACTATAG

Coding sequence (CDS) from alignment at CM002457.1:504077..505804-

>rna1386 ID=rna1386|Name=rna1386|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at CM002457.1:504077..505804- (Nannochloropsis gaditana)
ATGGAGGACAGTAAAGAGACCAGGACGCCCTCTGAAGCTGTCATACCTCC
CTCGCCTTTGACAGGGACGGACATCGGCCTTAAGATCCGTTGCCCCCCCA
AACAGGATCGTTGTGCTTTTTTTCTTAAGAGAAAGTTGCGCTTTTGCACG
GTTCCAAGACTTCCAACTTCAAAGTGGTGTGGAAATCATCAACATTTGGA
GGCAGGATATGAGAATTGTGCCGCAGCAGCACGTAGCAAGACACAAGAAA
AGCGGGGTGGGCAACGTCGAGTGCCTTGTCCCTTAGACTCGAATCACACT
GTGTATGAAAGGGAATTAAGTGCACACCTCCGCGTCTGCAACGTCAAGAG
GGAACAAAAATTCCTGGAGGATAAACCATTCTACCGCAGAAGCATCAACA
GCGGGAGTCTCAGGCGCCCAGGTTTAAATCCTCAGCCTCTTGACGTTGAC
GAGGTGCCTGCAATTTTAGCCCGAATTCGAGGATTGCAGCATCAAAAACA
ATCGCATCCGCGAGGGGAAGAAGTGGAGCAAATTACGAGCGGTCCGGTGG
CAGAGAAGATCCTTGCGACCATGGTGGCCAAAAACTGGACCAGTGAAAGC
AAAGCAAGGCATTTGGTGCAGCAAGCTTCCCTGATCTCGCACCTCCACCG
GCGTGGCCTCCTGGGTGCTCGCAGCACGTGCGTGGAGCTAGGGGCAGGTC
GGGGTACGCTGGGACATGCTGTGCACCAGGCGTTCCCCGAGGCCCGCGTG
GTGCTGGTCGAGCGCGCGGGTGTCAGGCTGAAAGCCGACGCTCCTTACAG
GCGGACGGGGGAGGGAGGCGTCTTTGCCCGATACCGCCTCGACATACGAG
ACTTGTGGATAAACGGCTTGCCGCTCGGACCTGGGGGGCTGACTTCTCCC
CTCGTCTTCATGGGGAAGCACGTCTGCGGGGTGGCCACGGACCTGTCGCT
GCGTGCCGTAGCCGACTATGTCCGAGACTTCGAAGGTAGCAAGGAGGAGG
GGGCAGCGGGAGAGGGGCCGTGTGAGCAAGCGCCGCGGCTGGGGGAGGGG
GCGACCATAGTAGGGCAGGATGAGATGGGTTCCCCTCGAGCACAGAATGC
TTCGAAAGGGAAGAGAAGGGCAAGGGTAGGGCTGGTGATCGCCACCTGCT
GCTACCACGTCTGTCGGTACGAGGACTACGTGGGGGTCGAGGCGTGGGAG
AATGACTTGGGGCTGGGTCGTGAGGAGTTCGAGGTGGCGCAGCGCAGCGC
GTGTTGGGTGTCATCCTTGACTAGCGCCCGGGGGCACCGATACAAGCCTC
GGCTCCGGGAAGAGGGGAAAGCGGGGCGAGAGTCGTACGCAGACAGTTGT
GAGGAAGAGGAGACGGGGGCGGAAGGTGAAGGGGGTGTGGAGGACGATAG
GGGCGTGCGGGGGCAGAGGGAAGAGACTGTGCGGCGGACGAGCGGCGATG
CGGGAGGGGAGCAAGTCGGAGGCCGGCGGCAGGCGGAAATGGATGATGCC
TACACCTCCTTGGGAAAGGGCCTGAGCCGCGATCAAAAGATTCAAATTGG
GCGGGCATGCAAGCGCCTCATCGATTACGGACGGCTAGCATATCTGCGGG
CTTCGGGTTTGGAGGCTGAGTGCCTCTTGTACTGTGAACCTGATGTGTCC
CCAGAGAACTCGTGTATACTTGCTTGGACACCTATCAATGAAGAGGAAGC
GGAAAATTTCAGGAATGTCGAACTATAG

Synonyms

Publications