EWM29297.1, cds1384 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|585111820|gb|EWM29297.1| (trna guanosine-2 -o-methyltransferase trm13 [Nannochloropsis gaditana]) HSP 1 Score: 1173.69 bits (3035), Expect = 0.000e+0 Identity = 575/575 (100.00%), Postives = 575/575 (100.00%), Query Frame = 0
Query: 1 MEDSKETRTPSEAVIPPSPLTGTDIGLKIRCPPKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILAWTPINEEEAENFRNVEL 575
MEDSKETRTPSEAVIPPSPLTGTDIGLKIRCPPKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILAWTPINEEEAENFRNVEL
Sbjct: 1 MEDSKETRTPSEAVIPPSPLTGTDIGLKIRCPPKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILAWTPINEEEAENFRNVEL 575
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|553194716|ref|XP_005856020.1| (coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526] >gi|553194973|ref|XP_005856065.1| coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526] >gi|422292995|gb|EKU20296.1| coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526] >gi|422293037|gb|EKU20338.1| coiled-coil domain containing 76, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 398.282 bits (1022), Expect = 2.659e-134 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 102 YERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGG 296
YERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGG
Sbjct: 1 YERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGG 195
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|998707407|ref|XP_015491430.1| (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Parus major]) HSP 1 Score: 207.223 bits (526), Expect = 9.883e-57 Identity = 164/536 (30.60%), Postives = 253/536 (47.20%), Query Frame = 0
Query: 33 PKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSG-----SLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVVL---VERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGG--VEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
P+ RCA F+ RK RFC + P ++CG H H +E++ ++R+PCPLD HTVYE +L HL+ CN + + K + ++ + IN+G + + L ++E+ ++ +++ + + H + EQI S ++ L KN ES +HL QQAS++ ++ + LLG VE GAGRG L H V A VL VERA R K D +++ +F R ++DI+ L +N +P+ PLV +GKH+CG ATDL+LR + + S GEG E AP+ A G + ++ G + G+VIA CC+H C + YVG + +++ +GLG EF QR + W + C +ET ++ GG ED + EET+ RT ++G + + G LS +++ +IG CKRLID+GR+ YL+ G +A Y E VS EN + A
Sbjct: 16 PEPGRCAHFVLRKGRFCRMIPAPGRRFCGEHGH----------------EEEQNDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPKPV----YFVQDINAGLKDIIEIPEKKVPLSSLSIEELQNLIIKLKKASNGLELHLK----EQILSHQALQEALND--PKN--GESAFKHLKQQASILGNMEKLHLLGPGRCFVEFGAGRGKLSHWVDIALENVESVLFLLVERATTRFKVDGKHKK--RDSIFERLQVDIQHLCLNKVPILEKK-KLPLVGIGKHLCGAATDLALRCLVE-------SYTTCCDGEGE-EPAPKRCRAAQTEGAPHKSA--GNESTTGDHKPVAGIVIALCCHHKCDWTHYVGRDFFKS-VGLGPVEFHYFQRMSSWAT----------------------------CGMQETTSKASGGEGSEDQTNDTEEHEETLSRT--ESGSDTLQGI---------------LSVEERKEIGCLCKRLIDHGRIEYLQHRGYKAALQYYTESAVSLENVLLTA 464
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|1095986816|ref|XP_009086749.2| (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 [Serinus canaria]) HSP 1 Score: 207.223 bits (526), Expect = 1.015e-56 Identity = 164/539 (30.43%), Postives = 255/539 (47.31%), Query Frame = 0
Query: 33 PKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQ------PLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPE---ARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRA-VADYVRDFEGSKEEGAAGEG---PCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
P+ RCA F+ RK RFC + P ++CG H H +E++ ++R+PCPLD HTVYE +L HL+ CN + + K + ++ + IN+G L+ P+ L ++E+ ++ R++ + + H + EQI S ++ L+ KN ES +HL QQAS++ ++ + LLG VE GAGRG L H + A + +LVERA R K D ++R +F R ++DI+ L +N +P+ P+V +GKH+CG ATDL+LR V Y +G EE A E AP G + +D + G+VIA CC+H C + YVG E +++ +GLG EF QR + W + +E+ + + E++G D + E T+ RT+ +G + + G LS +++ +IG CKRLID+GR+ YL+ G +A Y EP VS EN + A
Sbjct: 14 PEPGRCAHFVLRKKRFCKMIPAPGRRFCGEHGH----------------EEEQNDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPKPV----YFVQDINAG-LKDAAEIPEKQVPLSSLSIEELQNLITRLKKATNGLELHLK----EQILSHQALQEALSD--PKN--GESAFKHLKQQASILGNMEKLHLLGPGKCFVEFGAGRGKLSHWLDIALENVESVQFLLVERATTRFKVDGKHKR--RDSIFERLQVDIQHLCLNKVPILEKK-KLPVVGIGKHLCGAATDLALRCLVESYTTCCDGKDEEPAPKRCRAVQTEVAPHKSAGNESITED--------------HKPVAGIVIALCCHHKCDWTHYVGREFFKS-VGLGPVEFHYFQRMSSWATC------------------GMQETTSKASTSEDSG--------DQTNDTEEHEHTLSRTA--SGSDTLQGI---------------LSVEERKEIGCLCKRLIDHGRIEYLQQRGYKAALQYYTEPAVSLENVLLTA 462
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|291398434|ref|XP_002715882.1| (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 [Oryctolagus cuniculus]) HSP 1 Score: 205.297 bits (521), Expect = 6.538e-56 Identity = 168/563 (29.84%), Postives = 250/563 (44.40%), Query Frame = 0
Query: 13 AVIPPSPLTGTDIGLKIRCPPKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDV-----DEVPAILARIR--------GLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEA---RVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLP-LGPGGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
A P P TG P + RC +F+++K RFC + ++CG H A AA E+ ++R+ CPLD HTVYE +L+ HL+ CN + + K F+ + IN+G + Q + + +++ ++ ++R L+H SHP L + +S +HL QQAS++ ++ + LLG R VE GAG+G L H V A +A +LVE+ R K D +R+ + VF R ++DI+ L +N +P L G L P+V +GKH+CGVATDL+LR + + + S EE E P A R+ T + + R +N K G+VIA CC+H C + YVG E + LGLG EF QR + W + C +T E +G + EE D GG ++ DD+ SL L+ ++K +IG CK LID GR+ YL+ G Y +P VS EN + A
Sbjct: 3 ASAPTPPATGF---------PAEGRCGYFVEKKKRFCRMVVAAGKRFCGEH----------AGAA-----EEENTRKRILCPLDPKHTVYEDQLAKHLKKCNAREKPK----PDFFIQDINAGLTDETEILEQLVPISSLSEEQLENLIKKLRKASEGLNSTLKHHIMSHP----------------ALHDALNDPNNGDSATKHLKQQASILGNIEKLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKGTTRFKVDGKHRK--KNSVFERLQIDIQHLCLNKIPVLREGKL--PVVGIGKHLCGVATDLALRCL---IETYAASCEE--RNEEPL--AKRIKNDKTEKEINTLAKERNENIVPEKWTPVAGIVIALCCHHRCDWRHYVGKEYFRT-LGLGAVEFHYFQRMSSWAT----------------------------CGMRKTSLETSTMTTQPKGNQKDDEE------HDDGGYRI-------TDDSADSLPGLLTVEEKKKIGHLCKLLIDQGRVKYLQQKGFSPALQYYTDPLVSLENVLLTA 468
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|1209967839|ref|XP_021380827.1| (tRNA:m(4)X modification enzyme TRM13 homolog [Lonchura striata domestica] >gi|1208038214|gb|OWK64517.1| tRNA:m(4)X modification enzyme TRM13 [Lonchura striata domestica]) HSP 1 Score: 204.912 bits (520), Expect = 7.541e-56 Identity = 161/534 (30.15%), Postives = 247/534 (46.25%), Query Frame = 0
Query: 37 RCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSG-----SLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAF---PEARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVAD-YVRDFEGSKEEGAAGE---GPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
RCA F+ RK RFC + P ++CG H H +E++ ++R+PCPLD HTVYE +L HL+ CN + + K + ++ + IN+G + + L ++E+ ++ +++ + + H + EQI S ++ L+ KN ES +HL QQAS++ ++ + LLG VE GAGRG L H V A + +LVERA R K D ++R +F R ++DI+ L +N +P+ P+V +GKH+CG ATDL+LR + + Y +G EE A E AP G ++ R+ G+VIA CC+H C + YVG E +++ GLG EF QR + W + G + E G ED + E T+ RT+ +G + + G LS +++ +IG CKRLID+GR+ YL+ G +A Y EP VS EN + A
Sbjct: 12 RCAHFVLRKRRFCRMIPAPGRRFCGEHGH----------------EEEQNDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPKPV----YFVQDINAGLKDVVEISEKQVPLSSLSLEELQNLIIKLKKASNGLEVHLK----EQILSHQALQEALSD--PKN--GESAFKHLKQQASILGNMEKLHLLGPGRCFVEFGAGRGKLSHWVDIALENVENVQFLLVERATTRFKVDGKHKR--RDSIFERLQVDIQHLCLNKVPILEKK-KLPVVGIGKHLCGAATDLALRCLVESYTTSCDGEDEEPAPKRCRAAQTEVAPHKSAG--------------NESTTEVRKPVAGIVIALCCHHKCDWTHYVGREFFKST-GLGPVEFHYFQRMSSWAT-------------------CGMQETTSKVSASEDG-------EDQTNDTEEHEHTLSRTA--SGSDTLQGI---------------LSVEERKEIGCLCKRLIDHGRIEYLQQQGYKAAMQYYTEPAVSLENVLLTA 456
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|327270525|ref|XP_003220040.1| (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog isoform X2 [Anolis carolinensis]) HSP 1 Score: 204.142 bits (518), Expect = 1.456e-55 Identity = 165/542 (30.44%), Postives = 246/542 (45.39%), Query Frame = 0
Query: 33 PKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSG------SLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESK-----ARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEARVV---LVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLP-LGPGGLTSPLVFMGKHVCGVATDLSLRAVAD-YVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
P RCAFF++RK RFC + ++CG H E+ ++R+PCPLD HTVYE +L HL+ CN + + K + ++ + IN+G SL ++ L +E+ ++ ++R S + ++IL +N S+ K +HL QQAS++ ++ R LL + VE GAGRG L H V A +A+ V LVERA R K D + R F R ++DI+ L +N +P L L P+V +GKHVCG ATDL+LR + + Y + ++ +E+ A ++ T DE + N+ G+VIA CC+H C ++ YVG E + GLG EF +R A W + LRE + R++ D EE++ E E EDD G D + SL + +++ QIGR CK LID+GR+ YL+ G EA Y + VS EN + A
Sbjct: 11 PPPGRCAFFVERKKRFCKMVPAQGRRFCGEH----------------GVHEEEKSRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPKPV----YFAQDINAGPKDATESLEEEQVSISALSKEELEDLIRKLR-------------RASTSISNVIKDQILCHQALQNALSDPKNGDAATKHLKQQASILGNMERLELLQPGNCFVEFGAGRGKLSHWVDTALHDAKNVHFLLVERAATRFKVDGKHSRNS----FERLQVDIQHLCLNKVPVLAKEKL--PVVGIGKHVCGAATDLALRCLVETYAKHYDNREEDPAPKRLKTDET-----NETSFCPDETCT----NSVSENWSPVAGIVIALCCHHRCDWKHYVGQEFF-TAAGLGATEFNYFRRMASWATC-----------GLRETAR--RDTATDGKNEEQSN-EAEEHEEDDNGA----------------------------DSNWDSLQGLFTAEERKQIGRRCKLLIDHGRIEYLQQRGYEAVLQRYTDLSVSLENVLLTA 461
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|975106853|ref|XP_015268842.1| (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Gekko japonicus]) HSP 1 Score: 203.756 bits (517), Expect = 2.108e-55 Identity = 164/535 (30.65%), Postives = 252/535 (47.10%), Query Frame = 0
Query: 33 PKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGL------NPQPLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEAR---VVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVADYVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
P+ RCA+F++RK RFC + ++CG H QE+ G+RR+PCPLDS HTVYE +L HL+ CN + + K + ++ + IN+GS L + L +E+ ++ +++ + +S + +QI S + L ++ ++ +HL QQAS++ ++ R LLG R VE GAGRG L H V +A +A+ +LVERA R K D +RR F R ++DI+ L ++ +P+ P+V +GKHVCG ATDL+LR +A+ + ++G E P A R T + S +S G+ IA CC+H C ++ YVG E + +GLG EF+ +R W + G R ++G ++ E +E G+E E DR V S D SL L+ +++ QIG CK LID+GR+ YL+ G +A Y +P VS EN + A
Sbjct: 11 PQPGRCAYFVERKRRFCKMVPARGRRFCGEH----------------AAQEEENGRRRIPCPLDSKHTVYEDQLQKHLKKCNSREKPKPV----YFAKDINAGSKEANKLPEEKQVSISALSKEELEDLIRKLKRASNGIKSVLK----DQICS----HQALQEALSDPRNGDAAFKHLKQQASILGNMERLNLLGPRRCFVEFGAGRGKLSHWVDRALQDAKDVHFLLVERATTRFKVDGKHRRNS----FERLQVDIQHLCLSKVPVLVKE-KLPVVGIGKHVCGSATDLALRCLAESYANL--CDDDGR--ESP--TAKRWKSSGTDGPPNNSPSEMCSKSSVENWSPVAGIAIALCCHHRCDWKHYVGQEFF-TAVGLGVTEFDYFKRMTSWATC-----GMR---------ESGPQTSTIEVESKEQGSEAEEQDPHDRSV---------ECSSD-------------------SLQGLLTTEERKQIGHLCKLLIDHGRIEYLQQRGYDAVLQYYTDPSVSLENVLLTA 463
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|929439761|ref|XP_005482098.2| (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Zonotrichia albicollis]) HSP 1 Score: 203.371 bits (516), Expect = 2.901e-55 Identity = 164/539 (30.43%), Postives = 246/539 (45.64%), Query Frame = 0
Query: 33 PKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQ------PLDVDEVPAILARIRGLQHQKQSHPRGEEVEQITSGPVAEKILATMVAKNWTSESKARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPE---ARVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVAD-YVRDFEGSKEEGAAGE---GPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
P+ RCA F+ RK RFC + P ++CG H H +E++ ++R+PCPLD HTVYE +L HL+ CN + + K + ++ + IN+G L+ P+ L ++E+ ++ R++ + + H + EQI S ++ L+ KN ES +HL QQAS++ ++ R LLG VE GAGRG L H V A + +LVERA R K D ++R +F R ++DI+ L +N +P+ P+V +GKH+CG ATDL+LR + + Y +G EE A E AP G +D + G+VIA CC+H C + YVG E +++ +GLG EF QR + W +C +ET + ED EE S A G +L LS +++ ++G CKRLID+GR+ YL+ G +A Y E VS EN + A
Sbjct: 20 PEPGRCAHFVLRKKRFCRMIPAPGRRFCGEHGH----------------EEEQNDRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPKPV----YFVQDINAG-LKDVSEIPEKQVPLSSLSIEELQNLITRLKKASNGLELHLK----EQILSHQALQEALSD--PKN--GESAFKHLKQQASILGNMERLHLLGPGRCFVEFGAGRGKLSHWVDIALENVESVQFLLVERATTRFKVDGKHKR--RDSIFERLQVDIQHLCLNKVPILEKK-KLPVVGIGKHLCGAATDLALRCLVESYTTCCDGKDEEPAPKRCRAAQTEVAPHKSAGNESTTED--------------HKPVAGIVIALCCHHKCDWTHYVGREFFKS-VGLGPVEFHYFQRMSSWA----------------------------TCGMQETTGKASTS-EDSEDQTNDTEEDEHTLSSTASGSD--------------TLQGTLSVEERKELGCLCKRLIDHGRIEYLQQQGYKAALQYYTEAAVSLENVLLTA 468
BLAST of EWM29297.1 vs. NCBI_GenBank
Match: gi|532028570|ref|XP_005357243.1| (PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Microtus ochrogaster]) HSP 1 Score: 203.371 bits (516), Expect = 3.499e-55 Identity = 164/558 (29.39%), Postives = 252/558 (45.16%), Query Frame = 0
Query: 12 EAVIPPSPLTGTDIGLKIRCPPKQDRCAFFLKRKLRFCTVPRLPTSKWCGNHQHLEAGYENCAAAARSKTQEKRGGQRRVPCPLDSNHTVYERELSAHLRVCNVKREQKFLEDKPFYRRSINSGSLRRPGLNPQPLDVDEVPAILARIRGLQHQKQSH--PRGEEVEQITSGPVAEKILATMVAKNWTSESK-----ARHLVQQASLISHLHRRGLLGARSTCVELGAGRGTLGHAVHQAFPEA---RVVLVERAGVRLKADAPYRRTGEGGVFARYRLDIRDLWINGLPLGPGGLTSPLVFMGKHVCGVATDLSLRAVAD-YVRDFEGSKEEGAAGEGPCEQAPRLGEGATIVGQDEMGSPRAQNASKGKRRARVGLVIATCCYHVCRYEDYVGVEAWENDLGLGREEFEVAQRSACWVSSLTSARGHRYKPRLREEGKAGRESYADSCEEEETGAEGEGGVEDDRGVRGQREETVRRTSGDAGGEQVGGRRQAEMDDAYTSLGKGLSRDQKIQIGRACKRLIDYGRLAYLRASGLEAECLLYCEPDVSPENSCILA 558
EA PPS T P + RC++F+++K RFC + ++CG H A AA E+ ++R+ CPLD HTVYE +L+ HL+ CN + + K F+ + IN+GS E+P L L ++ + + + + + P+ + I++ + ++ K +HL QQAS++ ++ + LLG R VE GAG+G L H V A +A +LVE+ R K D +RR + F R ++DI+ L +N +P+ G P+V +GKH+CGVATDL+LR + + Y +FE EE A R+ + T + + ++ + R G+VIA CC+H C + YVG E ++ LGLG E+F QR + W + G R S E +T AE R+ + E+ R D + S+ L+ ++K IG CK LID GRL YL+ G Y +P VS EN + A
Sbjct: 2 EAPAPPSHATAL---------PAEGRCSYFVEKKKRFCRMVAAAGRRFCGEH----------AGAA-----EEENARKRILCPLDPKHTVYEDQLAKHLKKCNSREKPK----PDFFIQDINAGSKHEM----------EIPEQLVPFSSLSEEQLENLIKKLRKASEGLNSPLKDHIMSHPALYDALNDPKNGDCAVKHLKQQASILGNIEKLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAENVHFILVEKVTTRFKVDGKHRR--KNSAFERLQIDIQHLCLNRIPVLREGRL-PVVGIGKHLCGVATDLALRCLVETYAANFEERTEEPLAK--------RVKDDKTEEESNALSKEVSEEDTPETRTPVAGIVIALCCHHRCDWRHYVGREYFKA-LGLGAEDFYYFQRMSSWATC-----GMRRT----------------SLEASDTTAE-------------------RKDDQNYDSEEHDERGDRPADGSTDSVPGVLTAEEKENIGHLCKLLIDQGRLEYLQQKGFSPALKYYTDPSVSLENVLLTA 469 The following BLAST results are available for this feature:
BLAST of EWM29297.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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