rna138, rna138 (mRNA) Nannochloropsis gaditana

Overview
Namerna138
Unique Namerna138
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1912
Alignment locationCM002455.1:359656..361263 +

Link to JBrowse

Properties
Property NameValue
Productheat shock protein
Orig transcript idgnl|cribi|Naga_100013g85.9749.mrna
Orig protein idgnl|cribi|Naga_100013g85.9749
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:359656..361263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g85gene132Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna138rna138-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30461.1cds138Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna138 ID=rna138|Name=rna138|organism=Nannochloropsis gaditana|type=mRNA|length=1912bp
AACAAGCACACGTTCACATTAAAAGTGTGGTTTTGCGTTATGGTACATTT
ATTCAATGAAATCTAGAAGCGTTATAATCTCAAAGAGTTCTTATTTGTCT
GGCTGCTGCATAGCTGGTGAGAGCTGGTCTGGAAGCCCCCTGCCCTCTTC
TAAGCTACAAATATCGCATTCAAAATACCATTTTCAGTCATCATCCGCGA
GCTTTCTTTCACTTCCAGAAACCACATTCACCCATATCTTTCCTTCATAG
TACTGCTTTTGGTCAATGAAGAGTCAAAACAAAGGACGAAGGATACGGTT
ATCCATGGCCCCTGAGGACGGGAGAGCGGCCCAAGCACATAATGGCATAC
ACCATATACCAGGCGCAGGCATAAATAACATTGCCCAAATGCGAGGCCCG
AGGAAATCTCAAGAGATAAGGAGAGCAAGTGCGCTTCAGGATCGGCGCAG
GTATGCCGACATCGTGCTGCTGTCCACAGTTGTGCTGCTTAGCTCCTCAA
CAGCTTTCACGACAGCTTTCGTCATGAAATCAGTGCCTCCAAAAACTTCG
GTTGATTTACGCCCTGGACTCCCTACCTGTGCCATGGTCTCTTCAATTGC
GGCAGAGAACACACTGGTAAAAGCTTCTATGCCTCTTTCAACCGGCCCCA
TTCCTCAAAAAGAGACCATCTTGAAGCTGGGCACCGACGGCTTGGAAAGA
GTATTGGAGGGTAAGGGGAGGGCGCGAATGGTATGGCGTGCTGTCCGGGA
AGGCCTTGATCCACATGAAACGGATCCAGCTTCGCCTATGTTCGACAGCC
GCATTACCAGCAGGACCCGGGCGATACTCCAAGAGCGCGTCCTTGGCCCT
CAATGGACCTTGGTGCAGAGGACAAGTAGCACGTGCGGGACGCTCAAGTT
GTTGGTTCGATTGCACGATGGACTGATGGTGGAGACCGTGGTTATTCCTG
CGCGCTTGGGCCCTCGGTCCAACGGCCTTGCCAGGGGGATGAGCGGGGAG
GCAGAGGATTCCTTGGCGCTGGCGTCTCGTTCCACCGTGTGTGTGAGCTC
CCAGGTCGGCTGTGCCCAAGCCTGTGCCTTTTGTCTAACAGGGACCATGG
GATTTGTCCGACACTTGAGCATCGACGAAATCCTGATGCAGGTGCAGTTG
GCCTTGCAGAAAGTACGCGCGGAGGGGCTTCCCGGGCTACGGAACGTGGT
GTTCATGGGCATGGGGGAGCCGCTGAATAACCATCGCGCTGTCAGGCACG
CCTTGGCATGCATGACCGATCCACACGCTTTCGCCCTCTCCCCTTCTTTT
ATCACCCTCTCGACCGTCGCACCGTCTCCTGGACACGTACGGCATTTCCT
TGATATGCCTAAAATTAGACTGGCTTGGTCCGTTCATGGCGCCGCGGATG
GCTTACGCCGAACATTGGTGCCTACAACTAGTTCGAGTATGGTGGAGCTG
CGGGAAGCGTTTCGAGAGGTGATGGCTCAGCGCGGGGATACGTATATTTT
CATAGAAGTGACCTTGATAGAAGGAGTAAATGACTCTTTGGATGATGCTG
AGGCTCTGGTGGAATTGTTGAGGCCTTTTGGCAGGACTGCCGTTAAAGTG
AATCTTATCCCTTACAATGACACTGGCGTCAATGGCTGGATGCCTTCTCC
CCCGGGAAACATTTTGGCATTCCAGACGTATGTACGGACTCATGGCGGGT
GGCTAACATTTGCACGCACTCCTAGAGGAAGGGAGGAGTCCAGCGCTTGT
GGACAACTGGCTACCGGCTTCTCTGGACAACCTCAGGAAAAGATGTTGAA
AGCTCAGGCCCTAAAGAGCTGATTTCCTCGGGCAAATTATAGTCCGTCAG
TTAGTGTACAGTGAAAGGAAAGTAACCATGTGCAGCGCAACAAATCACAA
ATAGTTTGCATG
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protein sequence of rna138

>rna138-protein ID=rna138-protein|Name=rna138|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDAS
GPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMG
DGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEH
PGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKD
GVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFV
TEVVGGDKKNESAEA
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mRNA from alignment at CM002455.1:359656..361263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna138 ID=rna138|Name=rna138|organism=Nannochloropsis gaditana|type=mRNA|length=1608bp|location=Sequence derived from alignment at CM002455.1:359656..361263+ (Nannochloropsis gaditana)
AAGTGAAAGAAAGCTCGCGGATGATGACTGAAAATGGTATTTTGAATGCG
ATATTTGTAGCTTagaagagggcagggggcTTCCAGACCAGCTCTCACCA
GCTATGCAGCAGCCAGACAAATAAGAACTCTTTGAGATTATAACGCTTCT
AGATTTCATTGAATAAATGTACCATAACGCAAAACCACACTTTTAATGTG
AACGTGTGCTTGTTTGTCAGTCGCGGAGTACTGACCaaatttccccccct
cttcctccccgccctgccaTGGACAGGAAACATGCTCtctcatctcctcc
gccggtcCGTCTCGGGGACAAGCACTGCCTTAAAACCGCCTTTCGGCTCC
TTTACGTCACCTTTAGCCTCGATACCATGCAGCAGCAATTCTTTGACGAG
TTGCAGCATTAATTGGGACACGGATGCTTCCGGGCCGGGAGGCTGTCGAC
GATTGCATCAAGCGGCGGCCCTCAGGCATCCGAGAAGTGGGTTTTACGGG
GGCGATCACGCAGGACACTTGACCATGCATGCAACCACCATTCTGTGTGT
GCGCAAGGGCGACAAAGTGGTAATGATGGGGGACGGGCAGGTCTCGCAGG
GCGCAACGGTCGTCAAGCCCAACGCGAAGAAAGTCCGGCGCTTGGGAGAG
GATATCATAGCGGGCTTTGCGGGCTCCACGGCGGATTGTTTCACGCTTAT
GGAGCGCCTGGAGCGGAAGTTGGAAGAGCATCCTGGTCAGTTGACTCGAG
CGTGCGTGGATTTGGCAAAGGCCTGGCGCACAGATAAATACTTGCGGCGG
TTGGAGGCGTCGTTGCTGGTAGCGGATAAGAACGTCTCTTTTGAAATCAC
AGGGTTGGGTGATGTGCTGGAACCCAAGGATGGGGTCATCGCCATCGGCT
CAGGAGGGACGTTTGCGCTAGGTAAGCATGGTAGAATATTTGTGTACGGA
TCTCTTAAAATTTTGGACATCCAAAAAAATGTCTCTGGAGCGAAGGAAAA
ACGGGACAATCACAGTTGTGAGCCTGAACTTACCCCGACGCATGTGAGGC
GGGTGGATATGCATGGATAGATACATACATGTATATGGATACGTGGGATA
CATGTATATCGCACAAGAGTTTGAGGGACTCTTTGGCCTCTAGAACTGCA
ATATTGCCACCTTTGGTAGATTGAAGTTTCTCACAATGCCACTATGCTCC
AGTGGTGTAGTCACATGGCTGGTCGAGCGTGGAACCTTTCCTTTGTCTAA
TATCCGACCTTCTAAATCCAACAAACTACTTGCAGCGGCGGCTAAAGCTC
TTTTGGACCGGGAGGATATGGACGCCGAGCAGATTGCCCATAAGGCAATG
TCCATTGCTGCTGAGATCTGTGTGTATACAAATAACAATTTTGTCACCGA
GGTAGTTGGCGGTGACAAAAAGAATGAGTCTGCGGAAGCCTGACGGGTGA
GGGTGACGTGCACACGACAGCAAATACAGCGTTGGGAGGTCCGGCAGCAA
GAACAGATATAGCGGAGGGTTGGCTAGGAAAAACATAATGTTCGTTATTT
CCAGATGGTAATAAAAATAGACATTTAACAATAATCAGTATTTATATGGT
CACTGTTG
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Coding sequence (CDS) from alignment at CM002455.1:359656..361263+

>rna138 ID=rna138|Name=rna138|organism=Nannochloropsis gaditana|type=CDS|length=1596bp|location=Sequence derived from alignment at CM002455.1:359656..361263+ (Nannochloropsis gaditana)
ATGCTCtctcatctcctccgccggtcCGTCTCGGGGACAAGCACTGCCTT
AAAACCGCCTTTCGGCTCCTTTACGTCACCTTTAGCCTCGATACCATGCA
GCAGCAATTCTTTGACGAGTTGCAGCATTAATTGGGACACGGATGCTTCC
GGGCCGGGAGGCTGTCGACGATTGCATCAAGCGGCGGCCCTCAGGCATCC
GAGAAGTGGGTTTTACGGGGGCGATCACGCAGGACACTTGACCATGCATG
CAACCACCATTCTGTGTGTGCGCAAGGGCGACAAAGTGGTAATGATGGGG
GACGGGCAGGTCTCGCAGGGCGCAACGGTCGTCAAGCCCAACGCGAAGAA
AGTCCGGCGCTTGGGAGAGGATATCATAGCGGGCTTTGCGGGCTCCACGG
CGGATTGTTTCACGCTTATGGAGCGCCTGGAGCGGAAGTTGGAAGAGCAT
CCTGGTCAGTTGACTCGAGCGTGCGTGGATTTGGCAAAGGCCTGGCGCAC
AGATAAATACTTGCGGCGGTTGGAGGCGTCGTTGCTGGTAGCGGATAAGA
ACGTCTCTTTTGAAATCACAGGGTTGGGTGATGTGCTGGAACCCAAGGAT
GGGGTCATCGCCATCGGCTCAGGAGGGACGTTTGCGCTAGCGGCGGCTAA
AGCTCTTTTGGACCGGGAGGATATGGACGCCGAGCAGATTGCCCATAAGG
CAATGTCCATTGCTGCTGAGATCTGTGTGTATACAAATAACAATTTTGTC
ACCGAGGTAGTTGGCGGTGACAAAAAGAATGAGTCTGCGGAAGCCTGAAT
GCTCtctcatctcctccgccggtcCGTCTCGGGGACAAGCACTGCCTTAA
AACCGCCTTTCGGCTCCTTTACGTCACCTTTAGCCTCGATACCATGCAGC
AGCAATTCTTTGACGAGTTGCAGCATTAATTGGGACACGGATGCTTCCGG
GCCGGGAGGCTGTCGACGATTGCATCAAGCGGCGGCCCTCAGGCATCCGA
GAAGTGGGTTTTACGGGGGCGATCACGCAGGACACTTGACCATGCATGCA
ACCACCATTCTGTGTGTGCGCAAGGGCGACAAAGTGGTAATGATGGGGGA
CGGGCAGGTCTCGCAGGGCGCAACGGTCGTCAAGCCCAACGCGAAGAAAG
TCCGGCGCTTGGGAGAGGATATCATAGCGGGCTTTGCGGGCTCCACGGCG
GATTGTTTCACGCTTATGGAGCGCCTGGAGCGGAAGTTGGAAGAGCATCC
TGGTCAGTTGACTCGAGCGTGCGTGGATTTGGCAAAGGCCTGGCGCACAG
ATAAATACTTGCGGCGGTTGGAGGCGTCGTTGCTGGTAGCGGATAAGAAC
GTCTCTTTTGAAATCACAGGGTTGGGTGATGTGCTGGAACCCAAGGATGG
GGTCATCGCCATCGGCTCAGGAGGGACGTTTGCGCTAGCGGCGGCTAAAG
CTCTTTTGGACCGGGAGGATATGGACGCCGAGCAGATTGCCCATAAGGCA
ATGTCCATTGCTGCTGAGATCTGTGTGTATACAAATAACAATTTTGTCAC
CGAGGTAGTTGGCGGTGACAAAAAGAATGAGTCTGCGGAAGCCTGA
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Synonyms
Publications