EWM30461.1, cds138 (CDS) Nannochloropsis gaditana

Overview
NameEWM30461.1
Unique Namecds138
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:359937..360576 +
Alignment locationCM002455.1:360941..361098 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30461.1
Productheat shock protein
Orig transcript idgnl|cribi|Naga_100013g85.9749.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:359937..360576 +
CM002455.1supercontigCM002455.1:360941..361098 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006508proteolysis
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0009376HslUV protease complex
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR023333Proteasome_suB-type
IPR022281ATP-dep_Prtase_HsIV_su
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
Homology
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|585113125|gb|EWM30461.1| (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 547.354 bits (1409), Expect = 0.000e+0
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query:    1 MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDASGPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGDKKNESAEA 265
            MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDASGPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGDKKNESAEA
Sbjct:    1 MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDASGPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGDKKNESAEA 265          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|947441699|ref|WP_056106189.1| (ATP-dependent protease subunit HslV [Mesorhizobium sp. Root157] >gi|945929576|gb|KQZ82804.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root157])

HSP 1 Score: 263.848 bits (673), Expect = 2.919e-86
Identity = 129/178 (72.47%), Postives = 154/178 (86.52%), Query Frame = 0
Query:   79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGED--IIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
             LTMHATTI+ VRKG KVV+ GDGQVS G T++K NAKKVRR+G+D  +IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+DGV+AIGSGG +ALAAA+AL+D  D DAE+IA KAM IA++ICVYTNNNFV EV+
Sbjct:    4 ELTMHATTIVTVRKGGKVVIAGDGQVSLGQTIMKGNAKKVRRIGKDGKVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGNGDVLEPEDGVMAIGSGGNYALAAARALID-SDKDAEEIARKAMKIASDICVYTNNNFVVEVI 180          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|470491928|ref|XP_004345950.1| (ATPdependent protease HslVU, peptidase subunit [Acanthamoeba castellanii str. Neff] >gi|440800367|gb|ELR21406.1| ATPdependent protease HslVU, peptidase subunit [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 263.077 bits (671), Expect = 3.236e-85
Identity = 126/193 (65.28%), Postives = 157/193 (81.35%), Query Frame = 0
Query:   65 RHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGD 257
            RHP  GF+G D+  +    ATTILCVRKG+ VVM+GDGQV+ G+TVVKPNA+KVR++   I+AGFAG+TAD FTL ERLE K+EEH GQL R+CVDLAK WRTDKYLRRLEA ++VADKN+S  +TG GDV+EP DG+IAIGSGGT+ALA A+ L+D  D+DAE IA K+M +AA++C+YTN+NFV E +  D
Sbjct:   24 RHP--GFWGPDNPAY----ATTILCVRKGNSVVMVGDGQVTLGSTVVKPNARKVRQIRPGIVAGFAGATADAFTLFERLEEKIEEHQGQLLRSCVDLAKQWRTDKYLRRLEALMVVADKNISLTLTGTGDVIEPNDGIIAIGSGGTYALACARGLIDLPDIDAETIALKSMKVAADLCIYTNHNFVVERISID 210          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|1113178461|gb|OJU50581.1| (HslU--HslV peptidase proteolytic subunit [Mesorhizobium sp. 61-13])

HSP 1 Score: 260.766 bits (665), Expect = 5.462e-85
Identity = 127/178 (71.35%), Postives = 154/178 (86.52%), Query Frame = 0
Query:   79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
             L+MHATTI+ VRKG KVV+ GDGQVS G T++K NAKKVRR+G+  ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+DGV+AIGSGG +ALAAA+AL+D  D DAE+IA KAM IA++ICVYTNNNFV EV+
Sbjct:    4 ELSMHATTIVTVRKGGKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGNGDVLEPEDGVMAIGSGGNYALAAARALID-TDKDAEEIARKAMQIASDICVYTNNNFVVEVI 180          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|947580129|ref|WP_056243571.1| (ATP-dependent protease subunit HslV [Mesorhizobium sp. Root552] >gi|945865847|gb|KQZ19413.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root552])

HSP 1 Score: 260.766 bits (665), Expect = 5.522e-85
Identity = 127/178 (71.35%), Postives = 154/178 (86.52%), Query Frame = 0
Query:   79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
             L+MHATTI+ VRKG KVV+ GDGQVS G T++K NAKKVRR+G+  ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+DGV+AIGSGG +ALAAA+AL+D E  DAE+IA KAM IA++ICVYTNNNFV EV+
Sbjct:    4 ELSMHATTIVTVRKGGKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGNGDVLEPEDGVMAIGSGGNYALAAARALIDTEK-DAEEIARKAMQIASDICVYTNNNFVVEVI 180          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|563555363|ref|WP_023761119.1| (ATP-dependent protease subunit HslV [Mesorhizobium sp. LNHC252B00] >gi|563145484|gb|ESY69313.1| peptidase [Mesorhizobium sp. LNHC252B00])

HSP 1 Score: 259.61 bits (662), Expect = 1.324e-84
Identity = 127/180 (70.56%), Postives = 154/180 (85.56%), Query Frame = 0
Query:   77 AGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
            +  LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+  ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+ GV+AIGSGG FALAAA+AL+D  D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct:    2 SNELTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKSGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEHGVMAIGSGGNFALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVIETL 180          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|652697408|ref|WP_027039978.1| (ATP-dependent protease subunit HslV [Mesorhizobium ciceri])

HSP 1 Score: 258.84 bits (660), Expect = 3.279e-84
Identity = 126/178 (70.79%), Postives = 154/178 (86.52%), Query Frame = 0
Query:   79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
            +LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+  ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D  D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct:    4 NLTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|503293690|ref|WP_013528351.1| (MULTISPECIES: ATP-dependent protease subunit HslV [Mesorhizobium] >gi|319780229|ref|YP_004139705.1| 20S proteasome subunits A and B [Mesorhizobium ciceri biovar biserrulae WSM1271] >gi|317166117|gb|ADV09655.1| 20S proteasome A and B subunits [Mesorhizobium ciceri biovar biserrulae WSM1271] >gi|1016904994|gb|AMX97430.1| HslU--HslV peptidase proteolytic subunit [Mesorhizobium ciceri] >gi|1016910858|gb|AMY03293.1| HslU--HslV peptidase proteolytic subunit [Mesorhizobium ciceri biovar biserrulae] >gi|1190198924|gb|ARP67510.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. WSM1497])

HSP 1 Score: 258.455 bits (659), Expect = 3.463e-84
Identity = 126/178 (70.79%), Postives = 153/178 (85.96%), Query Frame = 0
Query:   79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
             LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+  ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D  D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct:    4 ELTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|947929142|ref|WP_056589273.1| (MULTISPECIES: ATP-dependent protease subunit HslV [Mesorhizobium] >gi|945431050|gb|KQU87290.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root102] >gi|946081792|gb|KRB34326.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root695])

HSP 1 Score: 258.455 bits (659), Expect = 3.618e-84
Identity = 126/180 (70.00%), Postives = 154/180 (85.56%), Query Frame = 0
Query:   77 AGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
            +  LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+  ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D  D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct:    2 SNELTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180          
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|563471032|ref|WP_023695988.1| (MULTISPECIES: ATP-dependent protease subunit HslV [Mesorhizobium] >gi|562986861|gb|ESX12414.1| peptidase [Mesorhizobium sp. LSJC265A00] >gi|563075159|gb|ESX99922.1| peptidase [Mesorhizobium sp. LNJC399B00])

HSP 1 Score: 258.455 bits (659), Expect = 3.863e-84
Identity = 126/178 (70.79%), Postives = 153/178 (85.96%), Query Frame = 0
Query:   79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
             L+MHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+  ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACVDLAK WRTD+YLRRLEA +LVADK+VS  +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D  D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct:    4 ELSMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVDLAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180          
The following BLAST results are available for this feature:
BLAST of EWM30461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113125|gb|EWM30461.1|0.000e+0100.00heat shock protein [Nannochloropsis gaditana][more]
gi|947441699|ref|WP_056106189.1|2.919e-8672.47ATP-dependent protease subunit HslV [Mesorhizobium... [more]
gi|470491928|ref|XP_004345950.1|3.236e-8565.28ATPdependent protease HslVU, peptidase subunit [Ac... [more]
gi|1113178461|gb|OJU50581.1|5.462e-8571.35HslU--HslV peptidase proteolytic subunit [Mesorhiz... [more]
gi|947580129|ref|WP_056243571.1|5.522e-8571.35ATP-dependent protease subunit HslV [Mesorhizobium... [more]
gi|563555363|ref|WP_023761119.1|1.324e-8470.56ATP-dependent protease subunit HslV [Mesorhizobium... [more]
gi|652697408|ref|WP_027039978.1|3.279e-8470.79ATP-dependent protease subunit HslV [Mesorhizobium... [more]
gi|503293690|ref|WP_013528351.1|3.463e-8470.79MULTISPECIES: ATP-dependent protease subunit HslV ... [more]
gi|947929142|ref|WP_056589273.1|3.618e-8470.00MULTISPECIES: ATP-dependent protease subunit HslV ... [more]
gi|563471032|ref|WP_023695988.1|3.863e-8470.79MULTISPECIES: ATP-dependent protease subunit HslV ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna138rna138Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications