EWM30461.1, cds138 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|585113125|gb|EWM30461.1| (heat shock protein [Nannochloropsis gaditana]) HSP 1 Score: 547.354 bits (1409), Expect = 0.000e+0 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query: 1 MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDASGPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGDKKNESAEA 265
MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDASGPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGDKKNESAEA
Sbjct: 1 MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDASGPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGDKKNESAEA 265
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|947441699|ref|WP_056106189.1| (ATP-dependent protease subunit HslV [Mesorhizobium sp. Root157] >gi|945929576|gb|KQZ82804.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root157]) HSP 1 Score: 263.848 bits (673), Expect = 2.919e-86 Identity = 129/178 (72.47%), Postives = 154/178 (86.52%), Query Frame = 0
Query: 79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGED--IIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
LTMHATTI+ VRKG KVV+ GDGQVS G T++K NAKKVRR+G+D +IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+DGV+AIGSGG +ALAAA+AL+D D DAE+IA KAM IA++ICVYTNNNFV EV+
Sbjct: 4 ELTMHATTIVTVRKGGKVVIAGDGQVSLGQTIMKGNAKKVRRIGKDGKVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGNGDVLEPEDGVMAIGSGGNYALAAARALID-SDKDAEEIARKAMKIASDICVYTNNNFVVEVI 180
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|470491928|ref|XP_004345950.1| (ATPdependent protease HslVU, peptidase subunit [Acanthamoeba castellanii str. Neff] >gi|440800367|gb|ELR21406.1| ATPdependent protease HslVU, peptidase subunit [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 263.077 bits (671), Expect = 3.236e-85 Identity = 126/193 (65.28%), Postives = 157/193 (81.35%), Query Frame = 0
Query: 65 RHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGD 257
RHP GF+G D+ + ATTILCVRKG+ VVM+GDGQV+ G+TVVKPNA+KVR++ I+AGFAG+TAD FTL ERLE K+EEH GQL R+CVDLAK WRTDKYLRRLEA ++VADKN+S +TG GDV+EP DG+IAIGSGGT+ALA A+ L+D D+DAE IA K+M +AA++C+YTN+NFV E + D
Sbjct: 24 RHP--GFWGPDNPAY----ATTILCVRKGNSVVMVGDGQVTLGSTVVKPNARKVRQIRPGIVAGFAGATADAFTLFERLEEKIEEHQGQLLRSCVDLAKQWRTDKYLRRLEALMVVADKNISLTLTGTGDVIEPNDGIIAIGSGGTYALACARGLIDLPDIDAETIALKSMKVAADLCIYTNHNFVVERISID 210
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|1113178461|gb|OJU50581.1| (HslU--HslV peptidase proteolytic subunit [Mesorhizobium sp. 61-13]) HSP 1 Score: 260.766 bits (665), Expect = 5.462e-85 Identity = 127/178 (71.35%), Postives = 154/178 (86.52%), Query Frame = 0
Query: 79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
L+MHATTI+ VRKG KVV+ GDGQVS G T++K NAKKVRR+G+ ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+DGV+AIGSGG +ALAAA+AL+D D DAE+IA KAM IA++ICVYTNNNFV EV+
Sbjct: 4 ELSMHATTIVTVRKGGKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGNGDVLEPEDGVMAIGSGGNYALAAARALID-TDKDAEEIARKAMQIASDICVYTNNNFVVEVI 180
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|947580129|ref|WP_056243571.1| (ATP-dependent protease subunit HslV [Mesorhizobium sp. Root552] >gi|945865847|gb|KQZ19413.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root552]) HSP 1 Score: 260.766 bits (665), Expect = 5.522e-85 Identity = 127/178 (71.35%), Postives = 154/178 (86.52%), Query Frame = 0
Query: 79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
L+MHATTI+ VRKG KVV+ GDGQVS G T++K NAKKVRR+G+ ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+DGV+AIGSGG +ALAAA+AL+D E DAE+IA KAM IA++ICVYTNNNFV EV+
Sbjct: 4 ELSMHATTIVTVRKGGKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGNGDVLEPEDGVMAIGSGGNYALAAARALIDTEK-DAEEIARKAMQIASDICVYTNNNFVVEVI 180
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|563555363|ref|WP_023761119.1| (ATP-dependent protease subunit HslV [Mesorhizobium sp. LNHC252B00] >gi|563145484|gb|ESY69313.1| peptidase [Mesorhizobium sp. LNHC252B00]) HSP 1 Score: 259.61 bits (662), Expect = 1.324e-84 Identity = 127/180 (70.56%), Postives = 154/180 (85.56%), Query Frame = 0
Query: 77 AGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
+ LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+ ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+ GV+AIGSGG FALAAA+AL+D D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct: 2 SNELTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKSGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEHGVMAIGSGGNFALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVIETL 180
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|652697408|ref|WP_027039978.1| (ATP-dependent protease subunit HslV [Mesorhizobium ciceri]) HSP 1 Score: 258.84 bits (660), Expect = 3.279e-84 Identity = 126/178 (70.79%), Postives = 154/178 (86.52%), Query Frame = 0
Query: 79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
+LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+ ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct: 4 NLTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|503293690|ref|WP_013528351.1| (MULTISPECIES: ATP-dependent protease subunit HslV [Mesorhizobium] >gi|319780229|ref|YP_004139705.1| 20S proteasome subunits A and B [Mesorhizobium ciceri biovar biserrulae WSM1271] >gi|317166117|gb|ADV09655.1| 20S proteasome A and B subunits [Mesorhizobium ciceri biovar biserrulae WSM1271] >gi|1016904994|gb|AMX97430.1| HslU--HslV peptidase proteolytic subunit [Mesorhizobium ciceri] >gi|1016910858|gb|AMY03293.1| HslU--HslV peptidase proteolytic subunit [Mesorhizobium ciceri biovar biserrulae] >gi|1190198924|gb|ARP67510.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. WSM1497]) HSP 1 Score: 258.455 bits (659), Expect = 3.463e-84 Identity = 126/178 (70.79%), Postives = 153/178 (85.96%), Query Frame = 0
Query: 79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+ ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct: 4 ELTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|947929142|ref|WP_056589273.1| (MULTISPECIES: ATP-dependent protease subunit HslV [Mesorhizobium] >gi|945431050|gb|KQU87290.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root102] >gi|946081792|gb|KRB34326.1| ATP-dependent protease subunit HslV [Mesorhizobium sp. Root695]) HSP 1 Score: 258.455 bits (659), Expect = 3.618e-84 Identity = 126/180 (70.00%), Postives = 154/180 (85.56%), Query Frame = 0
Query: 77 AGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
+ LTMHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+ ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACV+LAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct: 2 SNELTMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVELAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180
BLAST of EWM30461.1 vs. NCBI_GenBank
Match: gi|563471032|ref|WP_023695988.1| (MULTISPECIES: ATP-dependent protease subunit HslV [Mesorhizobium] >gi|562986861|gb|ESX12414.1| peptidase [Mesorhizobium sp. LSJC265A00] >gi|563075159|gb|ESX99922.1| peptidase [Mesorhizobium sp. LNJC399B00]) HSP 1 Score: 258.455 bits (659), Expect = 3.863e-84 Identity = 126/178 (70.79%), Postives = 153/178 (85.96%), Query Frame = 0
Query: 79 HLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGE--DIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVV 254
L+MHATTI+ VRKG+KVV+ GDGQVS G T++K NAKKVRR+G+ ++IAGFAG+TAD FTL+ERLE KLE++P QLTRACVDLAK WRTD+YLRRLEA +LVADK+VS +TG GDVLEP+ GV+AIGSGG +ALAAA+AL+D D DAE+IA KAM IA++ICVYTNNNFV E +
Sbjct: 4 ELSMHATTIVTVRKGNKVVIAGDGQVSLGQTIMKGNAKKVRRIGKGGNVIAGFAGATADAFTLLERLEAKLEQYPDQLTRACVDLAKDWRTDRYLRRLEAMMLVADKSVSLALTGTGDVLEPEFGVMAIGSGGNYALAAARALMD-SDKDAEEIARKAMQIASDICVYTNNNFVVETL 180 The following BLAST results are available for this feature:
BLAST of EWM30461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|