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Properties
| Property Name | Value |
|---|
| Product | e3 ubiquitin-protein ligase mdm2 |
| Orig transcript id | gnl|cribi|Naga_100029g46.9552.mrna |
| Orig protein id | gnl|cribi|Naga_100029g46.9552 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:478623..481158 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1379 ID=rna1379|Name=rna1379|organism=Nannochloropsis gaditana|type=mRNA|length=312bp
ATGTCTGCGATGGATGTTGGTAATGGACGACGATCGTTGAAAGTGGGTGA
GGAAAAAGGGCATCCGGGTCGAAACTTACGGTCACATTTTTTAATCAACG
TCTCTAAGGAGTCTTGGAAAGCGATTTTGGCATTCGACACACCAATTCAC
ATTGCGAACAAGTTGTCCGGCATACTTGTGGAGAGCTTGTTTCCCTTAGC
CAAGCCGAATCCTTTGAAGGTGGAAAAATGCATGATGAAGTCTATTTTCC
GCAATTATGTTTGTTTACTTTTACCCAAGATGCTACTTTTCGAGCTGCTC
TTGGACCCCTAA back to topprotein sequence of rna1379 >rna1379-protein ID=rna1379-protein|Name=rna1379|organism=Nannochloropsis gaditana|type=polypeptide|length=359bp
MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQ
STIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLK
FRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRL
KLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHG
AGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRH
TRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRT
KEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPV
DSVIQHFWA back to topmRNA from alignment at CM002457.1:478623..481158- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1379 ID=rna1379|Name=rna1379|organism=Nannochloropsis gaditana|type=mRNA|length=2536bp|location=Sequence derived from alignment at CM002457.1:478623..481158- (Nannochloropsis gaditana)
ACAACAGTGTTGATGTCCCACATAAATGCGTTTCACAAATGCGCTCCCGT
GGGCGTCCGATGTGACCCTGCGGCATTCATTGGCTCACAGTAGGACGTTG
CTTAAATAATGAATTCAGATAACTCATCATCAGGTATTACATTCATGCAT
CACAGGGCTAGCCTTGGCGCAGAGGTGATCTACGACGGGTCTGGTAACGA
AACAGCCCCCAAGTAATGAGAATGATGGCGAGGAACATGCCTTCCACTAC
CTTTCTTGCCCGCGTGTACTGAAGTGAGAAAGGCTGCAAATCGTAAGCAA
ATACGTCATCTGCTCGTGGCAAGTCTCTCGCAACTTTGGGTGGCCGGGTT
TCCATCCACAAGCATCGCAACTTTCCATCAACACACTTTCGTACGTCACG
ACAGACGGAGCCTTTTGACTGCTTGGTCGTATTTTGAACAAACATACGAA
CTAGTTTACAAAGTCTCTCAGCATATACATTACCAAGGCATGCTCCCTCC
ACCGAGCACTCCGCGCTCCACCGCCGTTGTAGCTTTCACTCAAGCTGCTT
TTCATTACCGTGTGGTTTGCGAAGATGGAGCTTATGTCCGCGCCGGCCTA
GAGCTAAGTTCGAGGCACTTATACACGATAGGAAGCCAAAGTACCATAGA
GGTTTTAGAGCGTTGTGTCAACAATCAAGGGCTTGCTCGCCTGCGCACTC
GAGATGGATGGATCTCGGAGATGCTGAATCCACTCTCTGGACAGCGAGGG
CCGATTGTCGAATTGGTTCCCCTACAACACCCTCTCAAATTTCGAATAAC
TTTCCCAGATGGTGCCCTGGTTAGGAGTGGAATTGAACTAAGCTCTGGCG
TTGTCGGCACGATACCTGCAGGCCAAGAGATCGTGGTGACGGAAAAGCGT
TTTTCAGACACGCCCTCCTACAGGTGTGTACCTCGCTTAAAGCTGGCGGA
TGGCTTGGGTTGGATAAGCATGCGAATCAATTCTCCTCCGCCCAGTGATG
CAGATGTTGTTGAGCTACTAGGCCTGGCGTGTTCAAGGGAAGTGGATAAT
TATAGCACCATGTTCGACGGCCTTGTGTCGGTGCATGGGGCTGGGATGCT
CGACGGAGAAGGAGACGAGAGTATCCATGGATATCAAGATGGAGGAAGCC
CATTGGACGTCACGAGTGGCGAGCGGAGAGGATCCCTTTCGATGGATTTA
TCTGTATCTGAGCCGCAGCCGGTAGGCAAGAACAGACATACGCGGTACGA
GCAACAGCGGCATCAACAGGGCCAGATTGCCGATATGTCGGAAAAGATAA
GGTATGCTTTACAGCCTGCAAGCGCGGGTATTGATGAGCAATCTGGAACT
GCAACTAGCAAAGGCGATCAGTACGAGAGAAGACGGACGAAGGAGGACCA
TTCTTGTTTGGTTTGCTTTAGTGCGTGCAGGAATGCAACTTTCGTGCATG
GAGAATCTGGGCACATTGCTTGCTGTTTGGAGTGTGCCCGGGTCCTTAAA
GGTCGTGGCGATCCGTGTCCAGTGTGCCGGTTACCAGTTGACTCCGTCAT
CCAACACTTCTGGGCCTAGCCCCGGGGGGCCAGGCCCGCGTGGCCTAATC
ATTTCATCCACCTTGCCCGAAGAGATATAAGGCAGAGGGGAAGTTATCAC
ATCTGGTCTTTCAAACGAGGCGCACGAAACACTCGCCTTCTAAAATGGGC
TACGGTCTTGAAAAATTACATGCTACTTGTGACTGCATGTATGGTTTTAT
CGGTGCCCACAAATATGTGCTTATCGTGCTTATCGCTGTTCGGCCCGTGA
TAATATCTTACGCACGATACATATCCAGATGAATCGTAATTCATAATTAC
TCCCTCGTGGACAAAGGGAAGTCGTGCGTAGGTACTTCTGTGGCTGCGAG
CAGCAATAAGAGCATGAAAACCAGAGACTTCCAAATCAAGCCCAAGATAC
AGATCAGTGACAAGTGATCATTTTAAGTGGAAAAATGTTGAATGGTCATG
GTCTTGAAAAATAAACTCAGTGCAAGGCGCGAGGACTGGAGGAAAGGAAA
ACAGTGAGATTTGGAGGTCAAATAGCTTTAGGGGTCCAAGAGCAGCTCGA
AAAGTAGCATCTTGGGTAAAAGTAAACAAACATAATTGCGGAAAATAGAC
TTCATCATGCATTTTTCCACCTTCAAAGGATTCGGCTTGGCTAAGGGAAA
CAAGCTCTCCACAAGTATGCCGGACAACTTGTTCGCAATGTGAATTGGTG
TGTCGAATGCCAAAATCGCTTTCCAAGACTCCTTAGAGACGTTGATTAAA
AAATGTGACCGTAAGTTTCTGTGTTATAGTGTACTCTAGTTTTGAAATTG
TCATGAATGCGCTCTAACGTGACGGCGGAGAGTTGCGCAAGGAGGAGGAG
GTTAACTACTCGTAAGTGAAAAAAGGAAGAGAGGTGCAAATTAGCTTAAA
TAAAAATTACGGTTAACAACGATACAAATTCATATTGAACGGCAAGGTGG
AAAATCCCGTGAAGAAGAAAACGTGACAACCACGTT back to topCoding sequence (CDS) from alignment at CM002457.1:478623..481158- >rna1379 ID=rna1379|Name=rna1379|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at CM002457.1:478623..481158- (Nannochloropsis gaditana)
ATGCTCCCTCCACCGAGCACTCCGCGCTCCACCGCCGTTGTAGCTTTCAC
TCAAGCTGCTTTTCATTACCGTGTGGTTTGCGAAGATGGAGCTTATGTCC
GCGCCGGCCTAGAGCTAAGTTCGAGGCACTTATACACGATAGGAAGCCAA
AGTACCATAGAGGTTTTAGAGCGTTGTGTCAACAATCAAGGGCTTGCTCG
CCTGCGCACTCGAGATGGATGGATCTCGGAGATGCTGAATCCACTCTCTG
GACAGCGAGGGCCGATTGTCGAATTGGTTCCCCTACAACACCCTCTCAAA
TTTCGAATAACTTTCCCAGATGGTGCCCTGGTTAGGAGTGGAATTGAACT
AAGCTCTGGCGTTGTCGGCACGATACCTGCAGGCCAAGAGATCGTGGTGA
CGGAAAAGCGTTTTTCAGACACGCCCTCCTACAGGTGTGTACCTCGCTTA
AAGCTGGCGGATGGCTTGGGTTGGATAAGCATGCGAATCAATTCTCCTCC
GCCCAGTGATGCAGATGTTGTTGAGCTACTAGGCCTGGCGTGTTCAAGGG
AAGTGGATAATTATAGCACCATGTTCGACGGCCTTGTGTCGGTGCATGGG
GCTGGGATGCTCGACGGAGAAGGAGACGAGAGTATCCATGGATATCAAGA
TGGAGGAAGCCCATTGGACGTCACGAGTGGCGAGCGGAGAGGATCCCTTT
CGATGGATTTATCTGTATCTGAGCCGCAGCCGGTAGGCAAGAACAGACAT
ACGCGGTACGAGCAACAGCGGCATCAACAGGGCCAGATTGCCGATATGTC
GGAAAAGATAAGGTATGCTTTACAGCCTGCAAGCGCGGGTATTGATGAGC
AATCTGGAACTGCAACTAGCAAAGGCGATCAGTACGAGAGAAGACGGACG
AAGGAGGACCATTCTTGTTTGGTTTGCTTTAGTGCGTGCAGGAATGCAAC
TTTCGTGCATGGAGAATCTGGGCACATTGCTTGCTGTTTGGAGTGTGCCC
GGGTCCTTAAAGGTCGTGGCGATCCGTGTCCAGTGTGCCGGTTACCAGTT
GACTCCGTCATCCAACACTTCTGGGCCTAG back to top
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