EWM29295.1, cds1377 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|585111818|gb|EWM29295.1| (e3 ubiquitin-protein ligase mdm2 [Nannochloropsis gaditana]) HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0 Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0
Query: 1 MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA
Sbjct: 1 MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|553194723|ref|XP_005856022.1| (hypothetical protein NGA_2113000, partial [Nannochloropsis gaditana CCMP526] >gi|422293039|gb|EKU20340.1| hypothetical protein NGA_2113000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 382.489 bits (981), Expect = 2.297e-131 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query: 1 MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDN 187
MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDN
Sbjct: 11 MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDN 197
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|1210530268|dbj|GAX11184.1| (E3 ubiquitin-protein ligase Mdm2 [Fistulifera solaris]) HSP 1 Score: 213.772 bits (543), Expect = 3.053e-60 Identity = 132/359 (36.77%), Postives = 185/359 (51.53%), Query Frame = 0
Query: 23 YRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLR----------------TRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRR------TKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
+RV C DGAYVRAG++LSS HL T+ S + V + VN GL+RL+ T DGW SE LNPLSGQRG I++ +P P +RI A +RSGIELSS +G G + VT + FS+ P+ +C+ RL+LA GWIS+R+N PP+D+ + GL S + D + E + QD P VT+G S ++ + + + T +G + + ++ G TA S + +++ ++D C++C + RNAT VHG +GHIACCL CAR+LK R DPCPVCRLP+D VIQHF+A
Sbjct: 292 WRVTCPDGAYVRAGMDLSSTHLGTVPYGSLLMVRRKLVNGMGLSRLQVCAALSKKLGNQILVETIDGWCSEFLNPLSGQRGSILQPLPFPLPALYRIDLRPSATIRSGIELSSPEIGFASYGALVRVTGRAFSEHPAEKCIERLRLAGNGGWISLRLNKHPPNDSLIAVHEGLDPSFDPDQ-------------PALFHVEEMRKVRRNQD---PTVVTNGAFISSTIPMIASVDDEEISAASLTSSSDSTIDEGNGTSRTAR-------SNTGCTYTKSTALSPSVRPTKQKESSTPVQRKDEFCVICLTEDRNATMVHGSTGHIACCLMCARILKARKDPCPVCRLPIDLVIQHFYA 627
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|1210514192|dbj|GAX26974.1| (E3 ubiquitin-protein ligase Mdm2 [Fistulifera solaris]) HSP 1 Score: 213.001 bits (541), Expect = 8.050e-60 Identity = 130/353 (36.83%), Postives = 182/353 (51.56%), Query Frame = 0
Query: 23 YRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLR----------------TRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
+RV C DGAYVRAG++LSS HL T+ S + V + VN GL+RL+ T DGW SE LNPLSGQRG I++ +P P +RI A +RSGIELSS +G G + VT + FS+ P+ +C+ RL+LA GWIS+R+N PP+D+ + GL S + D + E + QD P +T+G S ++ + + + T +G + + K + + I +K + ++D C++C + RNAT VHG +GHIACCL CAR+LK R DPCPVCRLP+D VIQHF+A
Sbjct: 304 WRVTCPDGAYVRAGMDLSSTHLGTVPYGSLLMVRRKLVNGMGLSRLQVCAALSKKLGNQILVETIDGWCSEFLNPLSGQRGSILQPLPFPLPALYRIDLRPSATIRSGIELSSPEIGFASYGALVRVTGRAFSEHPAEKCIERLRLAGNGGWISLRLNKHPPNDSLIAVHEGLDPSFDPDQ-------------PALFHVEEMRKVRRNQD---PALLTNGAFVSSTIPMIASVDDEEISAASLTSSSDSTIDEGNGTNRTAKSKTGCT-YTKSIALGPSVRLAKQTESSTPVQRKDEFCVICLTEDRNATMVHGSTGHIACCLMCARILKARRDPCPVCRLPIDLVIQHFYA 639
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|219114429|ref|XP_002176385.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402631|gb|EEC42621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 199.519 bits (506), Expect = 6.626e-55 Identity = 122/362 (33.70%), Postives = 183/362 (50.55%), Query Frame = 0
Query: 21 FHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLR----------TRD-----GWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDN-YSTMFDGLVSVHGAGMLDGEGDESIHGYQDGG-------SPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
+ +RV C GA+VR GLELS++H+ T+ S + V + +N GL+RL+ ++D GW SE LNPLSGQRG I + +PL P + + +GA++R G+ELSS +G P G + +T + F++ P+ CV RL++A GWIS ++N+PPP D +V+L+ L E + ++ F L M + + + G Q SPL+ R+GSL+ + K + Y + ++Q + D CLVC + R +T VHGE+GHIACCL CAR+LK +G PCP+CR P++ V+QHFWA
Sbjct: 310 WLWRVSCPVGAFVRKGLELSTQHITTVPYGSLVHVKRKAINAMGLSRLQVEVFVPPENESKDPEMVLGWCSEYLNPLSGQRGKIAQPLPLPVPAVYCVMLKEGAIIRDGVELSSQEIGHAPEGSMLSITSRAFAEHPTEDCVERLRIAGNGGWISRKLNNPPPLDLVIVKLIELDGEFEPNAPWAFHFSQL-----RKMQESHQEPTCCGTQVNEFTALPILSPLNPPERSRKGSLTSSR-------LKKPPLSTYAKIPNRQSALEDQ---------------------------------------CLVCLADFRTSTIVHGETGHIACCLVCARILKAQGSPCPICRQPIELVVQHFWA 620
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|224014003|ref|XP_002296665.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968715|gb|EED87060.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 169.474 bits (428), Expect = 4.010e-43 Identity = 122/380 (32.11%), Postives = 182/380 (47.89%), Query Frame = 0
Query: 4 PPSTPRSTAVVA---FTQAAFHYRVVCE-DGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTR------------------------DGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQ--------------SGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGD 341
P +P S +VV + + +RV+ E DGA+VR G EL S H+ T+ + + V + VN GL+RLR GWISE LNPLSG RG IVE +P PL +++ DGA++ SG+E+SS +G P G + V + F+D+ S RC+ +L+LA G GWIS++++ VVEL+G+ S E D D + +++ + + RGS +S+S +R RY QR Q++++++ Q + DE+ SG + DQ+++ R CL+C + RNAT VHGE+GHI CCL CAR+L R D
Sbjct: 442 PFVSPGSASVVTASVLDDSNWMWRVMYEPDGAFVREGCELGSDHIGTLPYGTIVNVQSKAVNEMGLSRLRIDAYVADAPFDHGRHSNDDAFCMKKVSGWISEFLNPLSGARGNIVEPIPFAVPLLYKVVLDDGAVIFSGVEISSLQIGLAPKGSLLSVVGRAFTDS-SVRCMEKLRLAGGGGWISVQLDH--HGREQVVELVGVDPSFEAD----------------------DPAAFHFKEQKKVMAELNANSRGSGGHRVSIS----TSSSRGARYFYQR----QLSEINDDETIEEQSLESDSDEEENKPQSLLAATLYRSGASKLFSDQHQQNR------CLICLTDERNATIVHGETGHIVCCLTCARILNARKD 782
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|298712853|emb|CBJ33373.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 160.229 bits (404), Expect = 1.577e-42 Identity = 78/137 (56.93%), Postives = 103/137 (75.18%), Query Frame = 0
Query: 19 AAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADG 155
A + YRVVC DGA+VR G+EL+S L+ + S +EVLER +N+ GL RL+ +GWISE+LNPLSGQRGP+VE+V L PL++R+ PDGA+VR +EL+S V TI AG+ + V+ K+FSD + RCV RLKLADG
Sbjct: 115 ARWRYRVVCRDGAFVRHGIELTSPFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVKLLQPLQYRVVLPDGAVVRRTVELASSQVKTIAAGELVQVSAKKFSDLGN-RCVQRLKLADG 250 HSP 2 Score: 127.102 bits (318), Expect = 4.639e-30 Identity = 87/267 (32.58%), Postives = 128/267 (47.94%), Query Frame = 0
Query: 100 KFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMFDGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQ----YERRRTK---EDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
++R+ DGA VR GIEL+S + +P + V E+R +D +PRLK+A+G WIS +N VVE++ L + + + DG V RR +++L+ S+ + + + ++ +D+ + L+ A G G DQ ++ + + ED +C+VC S R AT VHGE GHIACCLECAR+LK RGD CPVCR P+DSV+QHFWA
Sbjct: 118 RYRVVCRDGAFVRHGIELTSPFLFNLPWHSVVEVLERRINDAG----LPRLKIAEG--WISEVLNPLSGQRGPVVEIVKLL--QPLQYRVVLPDGAVV-------------------------------RR---TVELASSQVKTIAAGELVQVSAKK-----FSDLGNRCVQRLKLADGGAAAVEGDTNDDDDQKADLFKIKHSDSLGEDDNCVVCLSGPRTATIVHGEIGHIACCLECARILKARGDACPVCRAPIDSVVQHFWA 337
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|397618592|gb|EJK64964.1| (hypothetical protein THAOC_14246, partial [Thalassiosira oceanica]) HSP 1 Score: 130.954 bits (328), Expect = 3.499e-30 Identity = 135/391 (34.53%), Postives = 174/391 (44.50%), Query Frame = 0
Query: 21 FHYRVVCE-DGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTR-----------DGWISEM---------LNPLSGQRGPIVELVPLQ-HPLKFRITFPDGALVRSGIEL---SSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLA-DGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTM-FDGLVSVHGAGMLDG--EGDESIHG----YQDGG----SPLDVTSGERRGSLSMDLSVSE--PQPVGKNRHTR----YEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQ---------YERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
+ +RV C DGAYVR GLELSS + + + V + VN+ GL+RL D SE +P + + G I E P + P T VR L GV G P G+ + V + S+ P VPR A G GWIS +N PP D VVELLG+ + D+ S+ F+ + G+LD G+E+ G DGG SPL + +R +S +SE P R + RH+ S A P A I E S + GD Y T + CL+C S R AT VHGE+GHIACCL CAR+LK RGD CPVCRLP+D V+Q FWA
Sbjct: 159 WLWRVTCSPDGAYVRDGLELSSSRTCVLPYGTVVGVDGKAVNDMGLSRLSVEAYVDRGDGDEGDAESSENDGGEEDEDGTSPYTRRVGYISEPCPSRSRPCTASSTRGRRDPVRRRAVLVPDRDGVEGRRPVGRGVGVLGR--SEAP----VPRAAQARGGGGWISRTLNRRPPHDVPVVELLGVDGRFDPDDPSSFHFECM-----RGVLDELRAGEEADAGCCSAAADGGPGSDSPLAAAAADRMRRISSYADISEIGDDPAEPCRDDTGCDDADAPRHRPALFRSGSLLPSPAPGPMDA-IRESSSSCGKVGDAGASALPSEGYWSSSTNNPNRCLICLSEERTATIVHGETGHIACCLTCARILKARGDACPVCRLPIDLVVQQFWA 537
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|397629737|gb|EJK69481.1| (hypothetical protein THAOC_09258 [Thalassiosira oceanica]) HSP 1 Score: 96.6709 bits (239), Expect = 3.556e-20 Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 0
Query: 285 SGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
+G + + Y T + CL+C S R AT VHGE+GHIACCL CAR+LK RGD CPVCRLP+D V+Q FWA
Sbjct: 116 AGASALPSEGYWSSSTNNPNRCLICLSEERTATIVHGETGHIACCLTCARILKARGDACPVCRLPIDLVVQQFWA 190
BLAST of EWM29295.1 vs. NCBI_GenBank
Match: gi|156387590|ref|XP_001634286.1| (predicted protein [Nematostella vectensis] >gi|156221367|gb|EDO42223.1| predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 71.633 bits (174), Expect = 1.382e-12 Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0
Query: 306 CLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
C++C +NAT +HG++GH+ CC CA+VLK R DPCP+CR +D VI+ + A
Sbjct: 1 CIICLENPKNATLIHGDTGHLCCCWSCAQVLKRRCDPCPICRSRIDHVIRQYAA 54 The following BLAST results are available for this feature:
BLAST of EWM29295.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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