rna1373, rna1373 (mRNA) Nannochloropsis gaditana

Overview
Namerna1373
Unique Namerna1373
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1686
Alignment locationCM002457.1:468384..469730 -

Link to JBrowse

Properties
Property NameValue
Productpeptide chain release factor 1
Orig transcript idgnl|cribi|Naga_100152g12.724.mrna
Orig protein idgnl|cribi|Naga_100152g12.724
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:468384..469730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100152g12gene1327Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29306.1cds1371Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1373rna1373-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1373 ID=rna1373|Name=rna1373|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp
ATGCCTGGATCGAAAAGCTTTTCATCAGTCGGGAGGAAACACTTTCGTAA
GTGTGTCGGGCAAGAAATTGAGACTGCCGACAGGGACGAAGGTAGCCCTT
GTTATGGACACCAAATCTCCACCAGCTCCGACAAGACGGCTCAAGTAGCT
TGTGACTTACCCAATAGCCATAGAGAAAAAGACATGAAAAGCTCTTCACG
CATTCTAAGTGTCCGCGACAATGTTCCCAACCCGCCGGCCAACAATTCTC
CTCCCTTGACCTTCGAGGCGCCCTCCAAGGCCGAGCAGAGCCCTGTCTTT
AGTAAGGTAAAGACCACGGAGGGGCGTTCTGCTCCATCCATCGTCCCATC
ACTTTCCTCATTTTCCCGGTCCGCATCAAATGTGGCAGCCAGCACCGAGT
TCAAGCGCAGCATAAGTAACATGGGTGACAAGATCCGCGACACCTCCACG
TCAGAAATGACTCCCATGCGTCGGCTCTTTTCCCGTGGTATTTCGAACAT
CAAAGACCAGGTCGGCTCGCTTCTCGGAGAAGAACCCATTGTGGGGGCTG
TACGCCGCTATACACGTGCACACAAACAGATCCTTGGAGAATACCCTCTT
GGCATGCCCCCCCGTCCTAAGCCCGAAGACCTGTCTGAGCTGGACAAAAC
TTTCGGAGATTGGCTCAAAGAGCACGACCTTCTAGACCTCGTTGCTGTCT
TTGTGCTGTTTCCTCTTATGTTAAGTTACCAATGTCTTATGGAAATGCCG
GCCTTCTATGGGCTGTGGTGTTATCATCCTCAGCGTGTGATGGGCCTTGT
TGACAGTCGCAGAGGTACGCTGAAGCTGCCTCGTTACACGGTTCTTAAAT
GTGGATGGCAAACTTTGTGGACTCACATTGCAGTTATTGAAGGTCTTCAT
GTTCATTTAAATTCCACGATTAAGTCCATCCGTCGGCCATGGATGGGTAA
GAAGGGGCTGCTCGTTGTGGAGTCACGAGAATCGTCATGCGCGACAGGTG
CGGTTACTCCAGACAAGATTTGTAGTGGGAAAGTACCCGGGCCAAAGATG
CATGAGTTTGACCTCATTGTTATTGCCTGTAGCCTCAAGACCGCTGTCCC
ACTCTTTGTCGATGCCTCCCATGAGGAGCGCCAGCTCGCATCGTCCTTGG
AAGAATACGCCTTGTGCAGCACGATGTTCGAATCAGACATCATCCCAGGA
GAACGACCTATTGAACTTTTCCCATTTCCCAAACGTGGAGGGGCCTCTGG
CCAAGTATTTGCTCAATTTAACTCGCGCCTGCTCGTACGCAAATTGCCCG
ATGAGGCAGCCCCGCAGGTCGAGTGGGGCTGTGTCGAAGCGCCCACTGCC
TGCAAGGGAGCGTCGCCGGCCAAAGACCCGCGCATTGTGTTTCAATTCCT
TCACCGGGCTCCTAGTGCCGCAGATGTGAAAATGCTGCGGCGAAGACTTG
AAATGTTCTTTGACGATCAATCGTTCAATGAGCCCACCATCCTGAAACAG
TGCCTGTGGAAGTTTTTCCCTCATTTCCCTACAAAGGCCTTACTGGAAAG
TGGATGGCCATGGCGGCTTCAGAAGTTGCAGGGGCATAACAGCACGCTAT
ACCTCGGAGCGAGCGCCTGCATGGACGCCTTGGAGGAAGTGCTTCTGTAC
AATGATGCTGTAGTCCAGCGGCTTTTCCCGTCATGA
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protein sequence of rna1373

>rna1373-protein ID=rna1373-protein|Name=rna1373|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MRLFPAQGIPCHSLTVKQANCLTHACFGPTGVYLLVVAMRLPFHCCCLLG
WLTTLIMTHAFVSPNLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRT
YKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGA
KQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNV
MLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKN
AVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDE
VQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERS
QLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNW
KDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA
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mRNA from alignment at CM002457.1:468384..469730-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1373 ID=rna1373|Name=rna1373|organism=Nannochloropsis gaditana|type=mRNA|length=1347bp|location=Sequence derived from alignment at CM002457.1:468384..469730- (Nannochloropsis gaditana)
ATGCGTCTTTTTCCTGCTCAAGGCATCCCATGTCATTCACTCACAGTAAA
ACAGGCCAACTGTTTGACGCACGCGTGCTTTGGCCCGACGGGGGTCTATC
TTCTCGTCGTTGCAATGCGTCTCCCCTTCCATTGCTGTTGCCTCCTAGGG
TGGTTGACAACCCTCATCATGACCCATGCCTTCGTCAGTCCTAACCTGGT
AATGCCGTCCGGGCGCTCAATATCAAGAAGATATAAAGATTGGGTGTCGA
TGACCCTAGATCCTTTTGTACAGACCAAACTGGAGAGTTTTTCACGCACA
TACAAGGAACTCACTGAGCGCCTGGGGGACCCCGACGTTATTGCCAACCC
TACGACATTGATGCAAGTAAATCAGGAACGGATGAACATTGAAGAAGTGG
TCGTGAGCTATCAAGAGTGGCAGAAGCTTGCTGCAGACATGGCAGGGGCG
AAACAGCTCTTTAACGAGGCCGCGGGAGACCCCGAAATGAAGGAAATGGC
CCGCGCGGAGATTAAAGACTTGGAGGAGAGACAAGAGGACATTGAAAAGC
AACTGGTGGTCCTGATGCTGCCTTCTGACCCATTGGACGACAAGAATGTC
ATGCTTGAAATTCGGGCAGGCACGGGCGGTAGCGAGGCCGGGCTTTTCGC
GGGGGATCTAGTCGACGTGTACCAGCGTTACGGGCAGAGCCTGGGGTGGC
GCGTCCGCGTCGTCGAGGACTCCAGAAATGACGAGGGCGGATACAAGAAT
GCAGTGCTGGAGATCCAGGGCGACAAAGTCTATTCAAAGCTCAAATTTGA
GGCAGGGGTGCACCGAGTGCAACGCGTACCGGCTACCGAGACTCAGGGCC
GCGTGCACACAAGTACGGCGACGGTGGCTGTGATGCCCGAGGTGGACGAG
GTGCAAGTGAAAATAGACCCGAAGGACATTACCCTGACGACTGCTCGCTC
CGGTGGCTCAGGAGGGCAGAACGTGAACAAGGTAGAGACCGCGGTGGACT
TGCTGCACAAGCCGACGGGCATTCGGATTTTTTGCACACAAGAGAGGTCA
CAACTCAAGAATAAGGAGCTCGCCATGTCGATGCTGCGGTCGCGCTTGTT
CGATCTGGAACAGGAGAAACAAAGGGATGCGGTGGCAGGCCAGCGACGCT
CCCAGATCGGCTCGGGCAGTCGTTCGGAGAAGATAAGGACGTACAATTGG
AAGGACAGCCGATGCACGGACCACCGACTCGGCACGAACTTCCCTTTACA
GATGTTCCTGGACGGGAATCTGGAGGAGATTACCAATCAGTGTTTGTTGT
TGGAGCAACAGGAAAAGTTGGAGGCAATGCAATTGACGAACGCATAG
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Coding sequence (CDS) from alignment at CM002457.1:468384..469730-

>rna1373 ID=rna1373|Name=rna1373|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at CM002457.1:468384..469730- (Nannochloropsis gaditana)
ATGCGTCTTTTTCCTGCTCAAGGCATCCCATGTCATTCACTCACAGTAAA
ACAGGCCAACTGTTTGACGCACGCGTGCTTTGGCCCGACGGGGGTCTATC
TTCTCGTCGTTGCAATGCGTCTCCCCTTCCATTGCTGTTGCCTCCTAGGG
TGGTTGACAACCCTCATCATGACCCATGCCTTCGTCAGTCCTAACCTGGT
AATGCCGTCCGGGCGCTCAATATCAAGAAGATATAAAGATTGGGTGTCGA
TGACCCTAGATCCTTTTGTACAGACCAAACTGGAGAGTTTTTCACGCACA
TACAAGGAACTCACTGAGCGCCTGGGGGACCCCGACGTTATTGCCAACCC
TACGACATTGATGCAAGTAAATCAGGAACGGATGAACATTGAAGAAGTGG
TCGTGAGCTATCAAGAGTGGCAGAAGCTTGCTGCAGACATGGCAGGGGCG
AAACAGCTCTTTAACGAGGCCGCGGGAGACCCCGAAATGAAGGAAATGGC
CCGCGCGGAGATTAAAGACTTGGAGGAGAGACAAGAGGACATTGAAAAGC
AACTGGTGGTCCTGATGCTGCCTTCTGACCCATTGGACGACAAGAATGTC
ATGCTTGAAATTCGGGCAGGCACGGGCGGTAGCGAGGCCGGGCTTTTCGC
GGGGGATCTAGTCGACGTGTACCAGCGTTACGGGCAGAGCCTGGGGTGGC
GCGTCCGCGTCGTCGAGGACTCCAGAAATGACGAGGGCGGATACAAGAAT
GCAGTGCTGGAGATCCAGGGCGACAAAGTCTATTCAAAGCTCAAATTTGA
GGCAGGGGTGCACCGAGTGCAACGCGTACCGGCTACCGAGACTCAGGGCC
GCGTGCACACAAGTACGGCGACGGTGGCTGTGATGCCCGAGGTGGACGAG
GTGCAAGTGAAAATAGACCCGAAGGACATTACCCTGACGACTGCTCGCTC
CGGTGGCTCAGGAGGGCAGAACGTGAACAAGGTAGAGACCGCGGTGGACT
TGCTGCACAAGCCGACGGGCATTCGGATTTTTTGCACACAAGAGAGGTCA
CAACTCAAGAATAAGGAGCTCGCCATGTCGATGCTGCGGTCGCGCTTGTT
CGATCTGGAACAGGAGAAACAAAGGGATGCGGTGGCAGGCCAGCGACGCT
CCCAGATCGGCTCGGGCAGTCGTTCGGAGAAGATAAGGACGTACAATTGG
AAGGACAGCCGATGCACGGACCACCGACTCGGCACGAACTTCCCTTTACA
GATGTTCCTGGACGGGAATCTGGAGGAGATTACCAATCAGTGTTTGTTGT
TGGAGCAACAGGAAAAGTTGGAGGCAATGCAATTGACGAACGCATAG
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Synonyms
Publications