EWM29306.1, cds1371 (CDS) Nannochloropsis gaditana

Overview
NameEWM29306.1
Unique Namecds1371
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:468384..469730 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29306.1
Productpeptide chain release factor 1
Orig transcript idgnl|cribi|Naga_100152g12.724.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:468384..469730 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003747translation release factor activity
GO:0016149translation release factor activity, codon specific
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006415translational termination
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I_II
IPR004373PrfA
IPR014720dsRNA-bd_dom
IPR005139PCRF
Homology
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|585111830|gb|EWM29306.1| (peptide chain release factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 934.865 bits (2415), Expect = 0.000e+0
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 0
Query:    1 MRLFPAQGIPCHSLTVKQANCLTHACFGPTGVYLLVVAMRLPFHCCCLLGWLTTLIMTHAFVSPNLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 448
            MRLFPAQGIPCHSLTVKQANCLTHACFGPTGVYLLVVAMRLPFHCCCLLGWLTTLIMTHAFVSPNLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA
Sbjct:    1 MRLFPAQGIPCHSLTVKQANCLTHACFGPTGVYLLVVAMRLPFHCCCLLGWLTTLIMTHAFVSPNLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 448          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|553188367|ref|XP_005854782.1| (peptide chain release factor 1 [Nannochloropsis gaditana CCMP526] >gi|422294271|gb|EKU21571.1| peptide chain release factor 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 743.421 bits (1918), Expect = 0.000e+0
Identity = 367/392 (93.62%), Postives = 367/392 (93.62%), Query Frame = 0
Query:   57 MTHAFVSPNLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 448
            MTHAFVSPNL                         TKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA
Sbjct:    1 MTHAFVSPNL-------------------------TKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 367          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|999846671|gb|AMK98481.1| (plastid peptide chain release factor 1 [Monodopsis sp. MarTras21])

HSP 1 Score: 647.121 bits (1668), Expect = 0.000e+0
Identity = 317/408 (77.70%), Postives = 351/408 (86.03%), Query Frame = 0
Query:   39 MRLPFHCCCLLGWLTTLIMTHAFVSPNLV--MPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQ 444
            MR+       + WL   +   +F+ P L+  +PS   +  R +  ++M LDPFVQ+KL+S  RTY ELTERLGDPDVIANP +LMQVNQERM IEEVV+SYQ+WQKL  DM GAKQLFNEA  D E+KEMARAEIKDLE +Q +IE +LVVLMLP DPLDD+NVMLEIRAGTGGSEAGLFAG+LVDVY RY  + GWRVRV+EDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVA+MPEVD+VQV+ID KDI + TARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAM +LRSRLF++EQEKQR+++AGQRRSQIGSG RSEKIRTYNWKDSRCTDHRLG NFPLQ FLDGNLE ITNQCLL EQQEKL  MQ
Sbjct:    2 MRIITSIVLSVLWLA--LPAQSFLPPTLLFHIPSMAWVPARGRS-LAMALDPFVQSKLDSIKRTYHELTERLGDPDVIANPNSLMQVNQERMKIEEVVLSYQKWQKLGEDMVGAKQLFNEAGNDVELKEMARAEIKDLEAQQGEIEARLVVLMLPQDPLDDRNVMLEIRAGTGGSEAGLFAGNLVDVYTRYATAQGWRVRVIEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDDVQVQIDAKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQLLRSRLFEMEQEKQRESIAGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFPLQTFLDGNLEGITNQCLLQEQQEKLAEMQ 406          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|999846663|gb|AMK98477.1| (plastid peptide chain release factor 1 [Vischeria sp. CAUP Q 202])

HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 296/398 (74.37%), Postives = 334/398 (83.92%), Query Frame = 0
Query:   52 LTTLIMTHAFVSPNLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAG-DPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAMQLTNA 448
            LT     HAFV P   +   R   R    W+SM L+PFV+TKL+   R+YKELTERLGDPDVI +P TLM VNQER  IE VVV+YQ+++K   D+ GAKQLFNEA   DPE++EMAR EIK LE +Q+D+EKQL+VLMLP DP+DD+NVMLEIRAGTGG EA LFAGDLVDVY RY Q  GWR R+V ++R+D+GGYK AVLE+ GDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQV+IDPKDI + TARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAM +LRS+L+++E EKQ + V GQRRSQIGSG+RSEKIRTYNWKDSRCTDHRLG NFPLQ  L+G LE+ITNQCLL EQQEKLEA+QL  A
Sbjct:    9 LTFACTVHAFVLPASTIRWVRPARR----WLSMALEPFVKTKLDGIERSYKELTERLGDPDVIKSPQTLMHVNQERSKIEGVVVAYQQYKKNDEDLLGAKQLFNEAGQEDPELREMARDEIKGLEVQQDDLEKQLMVLMLPKDPMDDRNVMLEIRAGTGGDEASLFAGDLVDVYSRYAQIQGWRSRMVSEARSDDGGYKMAVLEVHGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVRIDPKDIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMQILRSKLYEMEVEKQMNEVTGQRRSQIGSGARSEKIRTYNWKDSRCTDHRLGQNFPLQTVLEGKLEDITNQCLLSEQQEKLEALQLQKA 402          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|999846659|gb|AMK98475.1| (plastid peptide chain release factor 1 [Trachydiscus minutus])

HSP 1 Score: 555.829 bits (1431), Expect = 0.000e+0
Identity = 269/419 (64.20%), Postives = 322/419 (76.85%), Query Frame = 0
Query:   39 MRLPFHCCCLLGWLTTLIMTHAFVSP--------------NLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAM 443
            MR       ++ WL    +  AF +                +  P G       +  + M LD FV  KL+   R + E+TERL DPDVI NP    ++NQER  IEEVV +Y+ W+KL  ++  AK L  E+  DP+M+EMAR E+K L+  +E++E +L++LMLP DP+DDKNVMLEIRAGTGGSEAGLFAGDL+DVY R+GQ+ GW+VR++++SRNDEGGYK AVLEIQGDKVYSK+KFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEV VKIDPK+I + TARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAM++LRS+L+++E EKQ++ + GQRRSQIGSG RSEKIRTYNWKDSRCTDHRLG NF L  FL G ++E+ NQCLL+EQ EKLE M
Sbjct:    1 MRGRLWASSVVAWLQVFPLVGAFFAAPPRARSLHLSQGFKGVAPPLGPYYHGGKRGRLCMALDDFVVNKLDGILRAFTEMTERLADPDVINNPNLSREINQERTKIEEVVGAYEHWRKLGQELEDAKNLLMESGDDPDMREMARLEVKQLDSSREELEDRLMILMLPQDPMDDKNVMLEIRAGTGGSEAGLFAGDLIDVYTRFGQTQGWKVRMIDESRNDEGGYKTAVLEIQGDKVYSKMKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVTVKIDPKEIEMHTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMTLLRSKLYEMELEKQQEQITGQRRSQIGSGGRSEKIRTYNWKDSRCTDHRLGQNFNLDKFLSGEIDEMINQCLLMEQNEKLEQM 419          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|298711208|emb|CBJ32429.1| (peptide chain release factor 1 [Ectocarpus siliculosus])

HSP 1 Score: 496.893 bits (1278), Expect = 3.793e-171
Identity = 233/370 (62.97%), Postives = 294/370 (79.46%), Query Frame = 0
Query:   73 SISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNE---AAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGN-LEEITNQCLLLEQQE 438
            + S R    + M LD FV  +L    RT+ ELTERLGDPDV+ANP  +M+V+QER ++EE+V  Y E+ K A D+ GAK++F E   A GD EMKEMAR EI+DLEE  E +E ++ +L+LP+DP DD+NVMLEIRAGTGG EA L+A +L+ VY++Y    GW ++V+E +  + GG++  + E+ GDKVYSKLK+EAGVHRVQRVPATETQGRVHTSTATVA+MPEVDEV V I P+DI + TARSGGSGGQNVNKVE+AVDL HKPTGIRIFCTQERSQLKN+E+AM +LRSR++D+E EKQ+   +G R++Q+GSGSRSEKIRTYNWKDSRC+DHR+G NFPL  FL G+ L+++   C+LL+QQE
Sbjct:   59 ATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDDRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHKPTGIRIFCTQERSQLKNREVAMKLLRSRVYDIELEKQQAETSGNRKAQVGSGSRSEKIRTYNWKDSRCSDHRIGKNFPLNNFLSGSGLDDMIGACILLDQQE 428          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|1210514074|dbj|GAX26856.1| (peptide chain release factor 1 [Fistulifera solaris])

HSP 1 Score: 487.649 bits (1254), Expect = 2.829e-168
Identity = 241/393 (61.32%), Postives = 305/393 (77.61%), Query Frame = 0
Query:   48 LLGWLTTLIMTHAFVSPNLVMPSGRSISRRYKDWVSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKL 440
            LL + +    T AFV  +   P   SI  R    + M LD  +  +LE+  R+Y+ LTERLGDPDVIA+ + L QV  +R   E+VV +Y+E++ L  D AGAK+L      DP+MKEMAR E+K++E + E++EK++ VL+LP DP DD+NV+LEIRAGTGGSEA +FAGDL+DVY++Y  S GW+  +++ +  D+GGYKNAVL+I+GD+VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVA+MPE DEV VKIDPKDI ++T RSGG+GGQNVNKVETAVDLLHKPTGIRI CTQERSQLKNKELAM ML S+L+DLE EK+      +R SQ+G+GSRSEKIRTYNWKDSRC+DHRLG NFPLQ FL G+++ + +  +  +Q+EKL
Sbjct:    3 LLLFASAAWQTAAFVHLSNNGPP--SILVRSSSTLKMVLDDSMMDRLENIRRSYQALTERLGDPDVIADSSLLRQVMSDRAQSEDVVAAYEEYKSLGEDYAGAKELL----ADPDMKEMAREEMKEIEPKMEELEKRIKVLLLPRDPNDDRNVLLEIRAGTGGSEANIFAGDLLDVYRKYITSQGWQSTLIDAAPGDDGGYKNAVLDIKGDRVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDEVDVKIDPKDIEMSTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQERSQLKNKELAMKMLMSKLYDLENEKREIEERARRGSQVGTGSRSEKIRTYNWKDSRCSDHRLGQNFPLQQFLSGDIDGMISAMIAKDQEEKL 389          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|1210520853|dbj|GAX20416.1| (peptide chain release factor 1 [Fistulifera solaris])

HSP 1 Score: 484.182 bits (1245), Expect = 7.230e-167
Identity = 231/359 (64.35%), Postives = 292/359 (81.34%), Query Frame = 0
Query:   82 VSMTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKL 440
            + M LD  +  +LE+  R+Y+ LTERLGDPDVIA+ + L QV  +R   E+VV +Y+E++ L  D AGAK+L      DP+MKEMAR E+K++E + E++EK++ VL+LP DP DD+NV+LEIRAGTGGSEA +FAGDL+DVY++Y  S GW+  +++ +  D+GGYKNAVL+I+GD+VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVA+MPE DEV VKIDPKDI ++T RSGG+GGQNVNKVETAVDLLHKPTGIRI CTQERSQLKNKELAM ML S+L+DLE EK+      +R SQ+G+GSRSEKIRTYNWKDSRC+DHRLG NFPLQ FL G+++ + +  +  +Q+EKL
Sbjct:   34 LQMVLDDSMMDRLENIRRSYQALTERLGDPDVIADSSLLRQVMSDRAQSEDVVAAYEEYKSLGEDYAGAKELL----ADPDMKEMAREEMKEIEPKMEELEKRIKVLLLPRDPNDDRNVLLEIRAGTGGSEANIFAGDLLDVYRKYITSQGWQSTLIDAAPGDDGGYKNAVLDIKGDRVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDEVDVKIDPKDIEMSTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQERSQLKNKELAMKMLMSKLYDLENEKREMEERARRGSQVGTGSRSEKIRTYNWKDSRCSDHRLGQNFPLQQFLSGDIDGMISAMIAKDQEEKL 388          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|488847215|ref|WP_002759621.1| (peptide chain release factor 1 [Microcystis aeruginosa] >gi|389718891|emb|CCH97186.1| Peptide chain release factor 1 [Microcystis aeruginosa PCC 9717])

HSP 1 Score: 478.019 bits (1229), Expect = 6.321e-165
Identity = 219/357 (61.34%), Postives = 287/357 (80.39%), Query Frame = 0
Query:   87 DPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKLEAM 443
            + ++  KL+S  +TYKELT RL DPDV  NP  L ++ + R ++EE V +Y+ WQK   D+ GAKQ+F E+A DPE++EMA  E+ +LEE+   +E QL +L+LP DPLD+KN+MLEIRAGTGG EA ++AGDLV +Y +Y ++  W+V ++ +S  D GG+K A+LEI+GD VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVD+V+V IDPKDI LTTARSGG+GGQNVNKVETAVDL+HKPTGIR+FCT+ERSQL+N+E AM +LR++L+D++ ++Q++AV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++EE+   C+  +QQEKLE +
Sbjct:    3 ESYLLDKLQSVEQTYKELTRRLADPDVTGNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESASDPELREMAALEVAELEEKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESPADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNQNFSLDRILDGDIEEVIQSCIAKDQQEKLEEL 359          
BLAST of EWM29306.1 vs. NCBI_GenBank
Match: gi|488883899|ref|WP_002796124.1| (peptide chain release factor 1 [Microcystis aeruginosa] >gi|189039979|sp|B0JYC5.1|RF1_MICAN RecName: Full=Peptide chain release factor 1; Short=RF-1 >gi|166090455|dbj|BAG05163.1| peptide chain release factor 1 [Microcystis aeruginosa NIES-843] >gi|389833132|emb|CCI22624.1| Peptide chain release factor 1 [Microcystis aeruginosa PCC 9809] >gi|1158729297|gb|OPF15077.1| peptide chain release factor 1 [Microcystis aeruginosa KW])

HSP 1 Score: 477.633 bits (1228), Expect = 7.779e-165
Identity = 218/354 (61.58%), Postives = 286/354 (80.79%), Query Frame = 0
Query:   87 DPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAGDPEMKEMARAEIKDLEERQEDIEKQLVVLMLPSDPLDDKNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHKPTGIRIFCTQERSQLKNKELAMSMLRSRLFDLEQEKQRDAVAGQRRSQIGSGSRSEKIRTYNWKDSRCTDHRLGTNFPLQMFLDGNLEEITNQCLLLEQQEKL 440
            + ++  KL+S  +TYKELT RL DPDV  NP  L ++ + R ++EE V +Y+ WQK   D+ GAKQ+F E+A DPE++EMA  E+ +LEE+   +E QL +L+LP DPLD+KN+MLEIRAGTGG EA ++AGDLV +Y +Y ++  W+V ++ +S+ D GG+K A+LEI+GD VYSKLKFEAGVHRVQRVP TE  GRVHTSTATVA+MPEVD+V+V IDPKDI LTTARSGG+GGQNVNKVETAVDL+HKPTGIR+FCT+ERSQL+N+E AM +LR++L+D++ ++Q++AV+  RRSQ+G+GSRSEKIRTYN+KD+R TDHRL  NF L   LDG++EE+   C+  +QQEKL
Sbjct:    3 ESYLLDKLQSVEQTYKELTRRLADPDVTGNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQIFKESASDPELREMAALEVAELEEKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDEASIWAGDLVRLYSKYAETQNWKVSLLSESQADMGGFKEAILEIKGDNVYSKLKFEAGVHRVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSRSEKIRTYNYKDNRLTDHRLNQNFSLDRILDGDIEEVIQSCIAKDQQEKL 356          
The following BLAST results are available for this feature:
BLAST of EWM29306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111830|gb|EWM29306.1|0.000e+0100.00peptide chain release factor 1 [Nannochloropsis ga... [more]
gi|553188367|ref|XP_005854782.1|0.000e+093.62peptide chain release factor 1 [Nannochloropsis ga... [more]
gi|999846671|gb|AMK98481.1|0.000e+077.70plastid peptide chain release factor 1 [Monodopsis... [more]
gi|999846663|gb|AMK98477.1|0.000e+074.37plastid peptide chain release factor 1 [Vischeria ... [more]
gi|999846659|gb|AMK98475.1|0.000e+064.20plastid peptide chain release factor 1 [Trachydisc... [more]
gi|298711208|emb|CBJ32429.1|3.793e-17162.97peptide chain release factor 1 [Ectocarpus silicul... [more]
gi|1210514074|dbj|GAX26856.1|2.829e-16861.32peptide chain release factor 1 [Fistulifera solari... [more]
gi|1210520853|dbj|GAX20416.1|7.230e-16764.35peptide chain release factor 1 [Fistulifera solari... [more]
gi|488847215|ref|WP_002759621.1|6.321e-16561.34peptide chain release factor 1 [Microcystis aerugi... [more]
gi|488883899|ref|WP_002796124.1|7.779e-16561.58peptide chain release factor 1 [Microcystis aerugi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1373rna1373Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications