rna1370, rna1370 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1370
Unique Name	rna1370
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2846
Alignment location	CM002457.1:459445..460790 -

Link to JBrowse

Properties


Property Name	Value
Product	EF-Hand 1, calcium-binding site
Orig transcript id	gnl\|cribi\|Naga_100152g9.718.mrna
Orig protein id	gnl\|cribi\|Naga_100152g9.718
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:459445..460790 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100152g9	gene1324	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1370	rna1370-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29300.1	cds1368	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:459445..460790-
coding sequence from alignment at CM002457.1:459445..460790-

mRNA sequence

>rna1370 ID=rna1370|Name=rna1370|organism=Nannochloropsis gaditana|type=mRNA|length=2846bp
ATAGGACCCCACATGTGTTCCCGTGCCTATTATCCACTGCCAAGCATCTT
TTTCGAATATTTACTCATATATCCTGGTGAAACTTGTCAAAATCGTGAAA
ATAAGCCCTTTGTGTGCGGGTTTACTGGCTTTACTTCTGAAAGAGGAGAA
GAAGAGGGGGAGGAGGTCGACGGAAAGTCGTGAGCTTTGAATTTGTGCCT
CCTCCCTCGAAAATTGTCACACAACCGGTATTCGTTATGCATATGGGGCC
CGCAACCGATAATCAAGTATAATCACTGTCAGCTTACGCTATGTAGCTTT
TTGTGGCACGAATTGGCCAATTTTACGGCTGGGTCTTCATGTGGCACGTA
TGTCCTGCTGGTCTGATCGATCAAGCCATTTCTTCTGGCATAACTGGCCA
CTCTTACACTAATGTGCGCTCATCTGACACCTTTCGCTGATGACACCATC
AATAGATCAGGAGCTCCAAACTGTTGTTGAGAAGTGTAACACGCAGCAAG
ACCATGCTGCCTGTTTTGTTTGTTCTGTCTGCTGTGGTCTTGAACAGAGC
CTTCGGGTTTCCTAGCACCATTATAGAGGCTACCGATAAAGGCAATCCTC
CGATTCCATGGTCATTTGGGGCGGAGAAGAGCTGGGACGCTCGTCGCGGA
CTCGTAGATGGCCAAGATGCCGTTTGTGACGCAATCAGCGACTGCACTAG
TTGTTTTCAAGAAGCAGGGTGCGGGTATTGTGGGGGAACCGGCCGTTGCC
TCGCGCAAGCGAGCGCTGATAAGTGCAGCAAAGGGTGGAGCGACACAGGC
ATCTGTTACACATCCTGTCCTGCGGATGCAGCACCATTGCACGAGGCTGC
AGGCGTCATCCAGTTCGGGGCAATGGCCCCTGAGGCGGTGCACTATATCC
CGGGGGAGAGCTGCACCTTCACCATCTGGCCTTTGCCGGGCAGTGGCTCC
GCGACCAGCCCGGGTGCCGGGGCAGGGAATCGTCGGTCTGTCATGATTCG
GTTGCAATTCGAATACCTGGATTTGGGTCCCGGGGATACCTTGAACATCT
ACAGCAATGGTTTGGACGGGCCCAAGATCCTCAGCATTGCGGGGTCAGGC
CTCGGCATCGTGAACCGAACCATTACCAGCCGCTCCAGCTCGGTGATTTT
GCGCCTCCATGCGGAAGGTCCCGTGGGCGGGACGGGGTTTCGCGTCTATT
GGCGGGTCATTGAAAGCTCGCCTTTGGATATTTATTTGATATCAGCGATC
ATAGTCACCTCCATCCTCACGTGCATCCTCTGCTCCTGTTGCTGCAACAA
CTGCGTGGCCATGTTCTCTGGTGCCGGCGGTGGGCGGCGGGGTGGGCGGC
TCCTTTGGGCATGGGGAGGGGCCAACGCGAGCGCCCCGGCCGCCCGGGCA
CTTTCCCCGCAAGAGAAGGCCCGGCTGCCTATAGCCCCTTACGACCCTGG
GGAATCGAATTTGTACAATTTTCGGGAGTGCTGCATTTGCTTGACAGATT
TCGAGCGGACGGATTTGGTGAGAAAATTGCCCTGTGGGCATGTCTACCAC
TCGGAGTGCGTTGATTGCTGGTTTTCGGTGAACTCCGTCTGCCCGCTCTG
CAAGTCCGACGTCCGCGACAAGCTCGGTGTCGGCGCAGAGGGAGCAGGCA
TGGTCCCCTTCTGGCGCATGCGTGCGGCCCTTCATCTGATCCAACGGCGG
TTGCTCTGGCCCGCCGGTCATCTTCTCCATCTCCACCGCCCTCCTCCTCA
CGGATCTGCCCTCTCCTTTCCAGGCAATCGAGAGGCGGAAGGTGGAAGGG
GAAGTGGGAACGGCAGGCGGTGGCTGAACAGCAGGGGGTGGTTAGGCGGG
GACCGAGGGGTACTGTCGATCGATTGGCAGCCCAGAGCCCCGACGGCGGA
AAGGGAGGGGGAGGAGCGTTGGCCGCGATGGGATCAGGGCGGGGAGCAGA
ACGTGCGAGGGGAGGAAGTCGTAGTGTTCGAATTTGCACCTGGAGGGGCT
GAGAGGGGAGGGCGGGCGGTGGAGGAAGGGGGCCGGGGCGAGGAGGGAGG
ACATGGATGGGGGGGTCAATGAAGGGAATGGGGGCGGGGACACAGCCGGC
GTGGATTTAGAGCGTGGCGACGTGGACAACCGAGCAGGTGGAGGAAGGGA
GGGTGAGGAGGACGGGAGGGGGAGGGAGGAGACGGGGCTCCGGGTCCCGC
AATGATGCGGCAGCTGGAGGGGGCAGGCGCAGGGAAAGTGCTGTCTGCGC
GTGGAAAGTGCTGTCTGCACATCACGGTCAAAGTGGACATAATGCTGGGG
GAGAGGAGATTCAAGGCATACGACGAGCGCTTCTTAATGTACGGTTGCCG
TCGCCGTGAAAGTTTTGGAGTGAAGAGAGTAAACGGGGAGAAGCTTCGAG
TGGGACCTCGCCGAAAGGCGAGTGCAGGCGCCGCCGCGTGTACATACGTA
GGGAGCAGAAAAGAAAAAGGCTCTCGTTTATATGTGTGTATAAAGGGGGG
AAGATTGTCAAGACAGCTAACGGGCGAGAGTAAGGACACGAAAGTCTGGT
GGTAGCGGAGGCCCATACCTGTGGGAAAGAGCCCCAGCCTCGCCCTTATA
GGAACCGGCTTGGATGTGGACGCAGCGGAAAGTCGCCGCGGCGTGGGGAT
AATGCCGGGCTTGGTCGCGCGGGAGGCTGTAGTATAAACAAGGAACCTAG
AGGTCTGCTGCCGGATGCTAGGGATGCACGGCAGGACGGTCACAAAGCAT
AGACATGTAAAGAGGATTTTCTATGCGGGAAATAAGAGCCAGTCAAATAT
TCCAGGCGATAAAATAAAGAAAGAAACAAAAGATGCTTCTTTTCGA

protein sequence of rna1370

>rna1370-protein ID=rna1370-protein|Name=rna1370|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDS
GRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQR
KEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKL
PDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFA
EWKQFIEELEKKQLEEERLAGGAKGSRM

mRNA from alignment at CM002457.1:459445..460790-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1370 ID=rna1370|Name=rna1370|organism=Nannochloropsis gaditana|type=mRNA|length=1346bp|location=Sequence derived from alignment at CM002457.1:459445..460790- (Nannochloropsis gaditana)
CTCCTGTTGAGCCACTGCAGGTTTGTTCATGTATGCATGATTTATTTCGG
TTCTTTTTTGAGGCAGCTTGCGTATACGTATATCCGACTCCGTGTTCTTA
TTTTTTGCTCTAAACCCCTTCAAGTACAATTCTTGCGTCAGAAGGGGAGG
ACCCGCTCGAGGACGAGGAATGAGGGGTTGCTGGAGCATCGCTTCCTTGA
CCCCGGTCTTACTGGTTGCCTGCCTTGCTGAGAGTGTAAAAGCACAAGTT
TATGAGCAACAACAATATCAGCAACAACGGCCGAGGCCTGAGTTTCGTGA
CATAGGGCGAAAAGATTCGGGCAGGTAAGGTTTATACGGAGGAATGAGGC
TGTTGAAGAGGCATGCGTGCAGGCTCGACAAGTAAAATGCCTCGCTTTTC
AATTTACTCCCGCTGTGTGGGCGTTTGTATGTCATATTGCACATGTGATG
ACTTGGGTTGTGTGTCTTCAGGCGTCATTCTTCGTAATAAACACTATCTC
GTTCTTGCCTGCAAGCATGATCACCAAAAGAAGTAAATTGTAAAGTCAAT
TAGCCAATACATTCTCCATGGTGTGAACACTATCCAAGCAGATTTTGGGG
GATGATGAAAACTGGAGCCGTGGGTGCCCTTGCCAGCTGGAGCTTTGGAC
AGCTATACTATCGGTGGCAGGCCAAGCGGCTTAAACAAGCACATCAGAAG
AAAAGCGATAAGCTCATAGCTTCCTACCAGCAGCGGAAGGAAGCGATCGT
GGCTCAGTTTGGGGAGGCGTACCAAGCGTTGGAAGTCAATGCGGACTACG
TGGACTCTTTAATTGCTCAATTAGAGGGGATACTGCAGCACCCGGAGACG
GACCCAAACAAGAGAAAGGTCGCTGAGTTCAAGCTTCCGGACGCCAATAA
CGACAATAAAATCTCAAGGGCGGAGTTTGAGGCCTACCTGCGGTCTTATT
TTGCGGCACATCCTGAGCTAGCAGACGTGGAGTATCCGTCGTTCGATGAC
TTCGATTTGGACGGCAGTGGATTGGTCTCCTTCGCGGAGTGGAAGCAGTT
CATCGAGGAGCTGGAGAAGAAGCAGCTGGAAGAGGAGCGGTTGGCCGGGG
GTGCGAAGGGTTCGAGGATGTAGTCCCCACATTTTTTGGTGGGTGGGCTG
GAGAACGAATGGTGAGAGATGATTGAGGCTCAGTTTGGACAGGCAATGTG
CTCCTTCTTATCTCAGTCGACGCCGAGCGCACAGGAACAAGACACTTGAG
GTCGAAAAGAAGCATCTTTTGTTTCTTTCTTTATTTTATCGCCTGGAATA
TTTGACTGGCTCTTATTTCCCGCATAGAAAATCCTCTTTACATGTC

Coding sequence (CDS) from alignment at CM002457.1:459445..460790-

>rna1370 ID=rna1370|Name=rna1370|organism=Nannochloropsis gaditana|type=CDS|length=1374bp|location=Sequence derived from alignment at CM002457.1:459445..460790- (Nannochloropsis gaditana)
ATTTTGGGGGATGATGAAAACTGGAGCCGTGGGTGCCCTTGCCAGCTGGA
GCTTTGGACAGCTATACTATCGGTGGCAGGCCAAGCGGCTTAAACAAGCA
CATCAGAAGAAAAGCGATAAGCTCATAGCTTCCTACCAGCAGCGGAAGGA
AGCGATCGTGGCTCAGTTTGGGGAGGCGTACCAAGCGTTGGAAGTCAATG
CGGACTACGTGGACTCTTTAATTGCTCAATTAGAGGGGATACTGCAGCAC
CCGGAGACGGACCCAAACAAGAGAAAGGTCGCTGAGTTCAAGCTTCCGGA
CGCCAATAACGACAATAAAATCTCAAGGGCGGAGTTTGAGGCCTACCTGC
GGTCTTATTTTGCGGCACATCCTGAGCTAGCAGACGTGGAGTATCCGTCG
TTCGATGACTTCGATTTGGACGGCAGTGGATTGGTCTCCTTCGCGGAGTG
GAAGCAGTTCATCGAGGAGCTGGAGAAGAAGCAGCTGGAAGAGGAGCGGT
TGGCCGGGGGTGCGAAGGGTTCGAGGATGTAGATGAGGGGTTGCTGGAGC
ATCGCTTCCTTGACCCCGGTCTTACTGGTTGCCTGCCTTGCTGAGAGTGT
AAAAGCACAAGTTTATGAGCAACAACAATATCAGCAACAACGGCCGAGGC
CTGAGTTTCGTGACATAGGGCGAAAAGATTCGGGCAGATTTTGGGGGATG
ATGAAAACTGGAGCCGTGGGTGCCCTTGCCAGCTGGAGCTTTGGACAGCT
ATACTATCGGTGGCAGGCCAAGCGGCTTAAACAAGCACATCAGAAGAAAA
GCGATAAGCTCATAGCTTCCTACCAGCAGCGGAAGGAAGCGATCGTGGCT
CAGTTTGGGGAGGCGTACCAAGCGTTGGAAGTCAATGCGGACTACGTGGA
CTCTTTAATTGCTCAATTAGAGGGGATACTGCAGCACCCGGAGACGGACC
CAAACAAGAGAAAGGTCGCTGAGTTCAAGCTTCCGGACGCCAATAACGAC
AATAAAATCTCAAGGGCGGAGTTTGAGGCCTACCTGCGGTCTTATTTTGC
GGCACATCCTGAGCTAGCAGACGTGGAGTATCCGTCGTTCGATGACTTCG
ATTTGGACGGCAGTGGATTGGTCTCCTTCGCGGAGTGGAAGCAGTTCATC
GAGGAGCTGGAGAAGAAGCAGCTGGAAGAGGAGCGGTTGGCCGGGGGTGC
GAAGGGTTCGAGGATGTAGATGAGGGGTTGCTGGAGCATCGCTTCCTTGA
CCCCGGTCTTACTGGTTGCCTGCCTTGCTGAGAGTGTAAAAGCACAAGTT
TATGAGCAACAACAATATCAGCAACAACGGCCGAGGCCTGAGTTTCGTGA
CATAGGGCGAAAAGATTCGGGCAG

Synonyms

Publications