EWM29300.1, cds1368 (CDS) Nannochloropsis gaditana

Overview
NameEWM29300.1
Unique Namecds1368
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:460467..460621 -
Alignment locationCM002457.1:459668..460199 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29300.1
ProductEF-Hand 1, calcium-binding site
Orig transcript idgnl|cribi|Naga_100152g9.718.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:460467..460621 -
CM002457.1supercontigCM002457.1:459668..460199 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Homology
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|585111824|gb|EWM29300.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 470.7 bits (1210), Expect = 6.684e-168
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
Query:    1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM 228
            MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM
Sbjct:    1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM 228          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|585109821|gb|EWM27554.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 96.6709 bits (239), Expect = 1.104e-20
Identity = 60/178 (33.71%), Postives = 99/178 (55.62%), Query Frame = 0
Query:   61 AVGALASWSFGQLYYRWQAKRLKQ------AHQ-KKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPN---KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM 228
            A G LA +      YR + K++KQ      AHQ K+ +  I S +Q+ E ++ +  E Y     +  Y+++ + +    +      P+   ++  AEFK PD N D+KI+R EF+ Y+R Y AA+PE +  +YPSFD+FD DG   ++FAEW+Q+I++ E    +E+ +    K  +M
Sbjct:   70 AGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKM 247          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|585109820|gb|EWM27553.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana])

HSP 1 Score: 94.7449 bits (234), Expect = 4.957e-20
Identity = 56/158 (35.44%), Postives = 91/158 (57.59%), Query Frame = 0
Query:   61 AVGALASWSFGQLYYRWQAKRLKQ------AHQ-KKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPN---KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEE 208
            A G LA +      YR + K++KQ      AHQ K+ +  I S +Q+ E ++ +  E Y     +  Y+++ + +    +      P+   ++  AEFK PD N D+KI+R EF+ Y+R Y AA+PE +  +YPSFD+FD DG   ++FAEW+Q+I++
Sbjct:   70 AGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQD 227          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|219127112|ref|XP_002183787.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405024|gb|EEC44969.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 84.7297 bits (208), Expect = 3.553e-16
Identity = 54/171 (31.58%), Postives = 91/171 (53.22%), Query Frame = 0
Query:   61 AVGALASWSFGQLYYRWQ-AKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPET----DPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGS 226
             +G+  SW  G  ++  +  K+LK   QK+  +L + Y          + + Y+  E N + +  ++ QL+  LQ  E+    +  +R   EFK PD + D++ISRAEF  Y+++Y + +P L++ +YP F+DFD DG G VSF E+ Q +    ++   E+   GG   S
Sbjct:   69 VLGSAVSWMLGAKFHSGRVTKKLKAKFQKEQKQLYSQY----------YNDVYKLTEQNQE-LQYMVEQLKEALQSTESKHELEALQRDYDEFKQPDIDGDDRISRAEFNMYVKNYLSNYPGLSEKDYPKFEDFDHDGDGFVSFQEYAQQMALQAQQAELEQMYGGGNAAS 228          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|1210522084|dbj|GAX19137.1| (hypothetical protein FisN_3Lh079 [Fistulifera solaris])

HSP 1 Score: 83.5741 bits (205), Expect = 8.961e-16
Identity = 58/167 (34.73%), Postives = 90/167 (53.89%), Query Frame = 0
Query:   62 VGALASWSFGQLYYRWQA-KRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSR 227
            VG  ASW  G  Y+  +A K++K   QK+  +L + Y       V +  E  Q L+     +   + Q+E   +  E +  +R   EFK PD + D++ISRAEF  Y+R Y + +P L + +YP F+DFD DG G VSF E+ Q +  L+ ++ E E++ GG    +
Sbjct:   72 VGCGASWFMGAKYHSSRAVKKVKTKFQKEQKELYSQYYND----VYKLTEQNQELQSAVQQLQQALLQVE---EKHELEALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQM-ALQAQKAEREQMYGGGDNQK 230          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|1072233733|gb|OEU18463.1| (hypothetical protein FRACYDRAFT_260404 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 81.2629 bits (199), Expect = 7.247e-15
Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 0
Query:   64 ALASWSFGQLYYRWQA-KRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEW-KQFIEELEKKQLEE 216
             + +W  G  ++  +A K LK+ H+ +  KL + Y       V + G+    L+   + +  L+ + E      E +  +R   EFK PD ++D++ISRAEF  Y++ Y + +P L + +YP F+DFD DG+G VSF E+  Q   + E+ +LEE
Sbjct:   92 GITAWVLGAKFHVGRATKELKRKHKSEQKKLYSQYYND----VYKLGDQNSLLQEQIEDLTELVQKTES---KAELEALQRDYDEFKQPDLDSDDRISRAEFSMYVKDYLSNYPGLTEKDYPKFEDFDHDGNGFVSFEEYSTQMAVQAEQAELEE 239          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|1210525539|dbj|GAX15608.1| (hypothetical protein FisN_3Hh079 [Fistulifera solaris])

HSP 1 Score: 80.8777 bits (198), Expect = 8.897e-15
Identity = 57/167 (34.13%), Postives = 90/167 (53.89%), Query Frame = 0
Query:   62 VGALASWSFGQLYYRWQA-KRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSR 227
            VG  ASW  G  Y+  +A K++K   QK+  +L + Y       V +  E  Q L+     +   + Q+E   +  E +  +R   EFK PD + D++ISRAEF  Y+R Y + +P L + +YP F+DFD DG G VSF E+ Q +  L+ ++ E+E++ G     +
Sbjct:   72 VGCGASWFMGAKYHSSRAVKKVKTKFQKEQKELYSQYYND----VYKLTEQNQELQSAVQQLQQALLQVE---EKHELEALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQM-ALQAQKAEKEQMYGSGDSQK 230          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|223994983|ref|XP_002287175.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976291|gb|EED94618.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.0258 bits (188), Expect = 3.155e-13
Identity = 53/200 (26.50%), Postives = 89/200 (44.50%), Query Frame = 0
Query:    6 SIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNAD---YVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEW 202
            S  + TP+ L      S+   ++    +Q QR                +G+ K     A   +   +++     K+LK+ HQ+    L   Y          + + Y+  E  A+    +D L   L    +  E +  +R+  EFK PD + D++ISR EF  Y+++Y + +P L + +YP F+DFD D  G VSF E+
Sbjct:   65 STLTFTPLHL-----HSISILLHNHNHHQTQR----------------FGLGKVALSSAFTYFLGAKIHSGRAVKKLKKKHQQDQKTLYTQY----------YNDIYKLEEQKAEQQYIIDQLKHSLSETTEKHEMEALQREYDEFKQPDVDGDDRISRTEFNMYVKNYLSNYPGLTEKDYPKFEDFDHDHDGYVSFQEY 233          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|298708691|emb|CBJ49188.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.559 bits (179), Expect = 4.768e-12
Identity = 46/166 (27.71%), Postives = 81/166 (48.80%), Query Frame = 0
Query:   63 GALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETD--------------PNKRKV-------AEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIE 207
            GA+A  S    +    AK+  +  +++S   IA + + ++A++A+     + L    +  D  + QL    +    D              P  R +        EFK PD + DN IS+ EF  Y+R Y + +P+ A+++ P F+DFDL+  G+VSF EW+ +++
Sbjct:   61 GAIAGASIEWWWSARSAKKGNKLLEQESAAFIAEWNKERDALMARRTYPIKLLAHEVEEADVQLMQLVAAAEDAGVDLGAGGSGLGGGATRPKARSIQQDNMEYEEFKQPDTDGDNVISKTEFYQYIRKYLSLYPDTAEMDIPHFEDFDLNNDGVVSFDEWQMYLD 226          
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|397625411|gb|EJK67786.1| (hypothetical protein THAOC_11134 [Thalassiosira oceanica])

HSP 1 Score: 71.633 bits (174), Expect = 1.747e-11
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 0
Query:  125 LIAQLEGILQHPETDPN----KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEW 202
            +I QL+  L     D      +R+  EFK PD + D++ISR EF +Y+++Y + +P L + +YP F+DFD DG G VSF E+
Sbjct:  109 IIEQLQQSLAKTNEDHEMENLQREYDEFKQPDTDGDDRISRTEFVSYVKNYLSNYPGLTEKDYPKFEDFDHDGDGYVSFQEY 190          
The following BLAST results are available for this feature:
BLAST of EWM29300.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111824|gb|EWM29300.1|6.684e-168100.00EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
gi|585109821|gb|EWM27554.1|1.104e-2033.71EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
gi|585109820|gb|EWM27553.1|4.957e-2035.44EF-Hand 1, calcium-binding site [Nannochloropsis g... [more]
gi|219127112|ref|XP_002183787.1|3.553e-1631.58predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210522084|dbj|GAX19137.1|8.961e-1634.73hypothetical protein FisN_3Lh079 [Fistulifera sola... [more]
gi|1072233733|gb|OEU18463.1|7.247e-1532.90hypothetical protein FRACYDRAFT_260404 [Fragilario... [more]
gi|1210525539|dbj|GAX15608.1|8.897e-1534.13hypothetical protein FisN_3Hh079 [Fistulifera sola... [more]
gi|223994983|ref|XP_002287175.1|3.155e-1326.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298708691|emb|CBJ49188.1|4.768e-1227.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|397625411|gb|EJK67786.1|1.747e-1141.46hypothetical protein THAOC_11134 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1370rna1370Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications