EWM29300.1, cds1368 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|585111824|gb|EWM29300.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 470.7 bits (1210), Expect = 6.684e-168 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 Query: 1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM 228 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM Sbjct: 1 MRGCWSIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM 228
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|585109821|gb|EWM27554.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 96.6709 bits (239), Expect = 1.104e-20 Identity = 60/178 (33.71%), Postives = 99/178 (55.62%), Query Frame = 0 Query: 61 AVGALASWSFGQLYYRWQAKRLKQ------AHQ-KKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPN---KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSRM 228 A G LA + YR + K++KQ AHQ K+ + I S +Q+ E ++ + E Y + Y+++ + + + P+ ++ AEFK PD N D+KI+R EF+ Y+R Y AA+PE + +YPSFD+FD DG ++FAEW+Q+I++ E +E+ + K +M Sbjct: 70 AGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQDAEAAASQEQLMYQQQKKGKM 247
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|585109820|gb|EWM27553.1| (EF-Hand 1, calcium-binding site [Nannochloropsis gaditana]) HSP 1 Score: 94.7449 bits (234), Expect = 4.957e-20 Identity = 56/158 (35.44%), Postives = 91/158 (57.59%), Query Frame = 0 Query: 61 AVGALASWSFGQLYYRWQAKRLKQ------AHQ-KKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPN---KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEE 208 A G LA + YR + K++KQ AHQ K+ + I S +Q+ E ++ + E Y + Y+++ + + + P+ ++ AEFK PD N D+KI+R EF+ Y+R Y AA+PE + +YPSFD+FD DG ++FAEW+Q+I++ Sbjct: 70 AGGVLAGYWLSGWNYRSKNKKMKQKYERDLAHQEKRVEDAIRSVRQQYEDVLERKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSPSASLQQDYAEFKQPDLNGDDKITRREFDQYMRQYLAANPEYSKYDYPSFDEFDKDGDNAITFAEWQQYIQD 227
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|219127112|ref|XP_002183787.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405024|gb|EEC44969.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 84.7297 bits (208), Expect = 3.553e-16 Identity = 54/171 (31.58%), Postives = 91/171 (53.22%), Query Frame = 0 Query: 61 AVGALASWSFGQLYYRWQ-AKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPET----DPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGS 226 +G+ SW G ++ + K+LK QK+ +L + Y + + Y+ E N + + ++ QL+ LQ E+ + +R EFK PD + D++ISRAEF Y+++Y + +P L++ +YP F+DFD DG G VSF E+ Q + ++ E+ GG S Sbjct: 69 VLGSAVSWMLGAKFHSGRVTKKLKAKFQKEQKQLYSQY----------YNDVYKLTEQNQE-LQYMVEQLKEALQSTESKHELEALQRDYDEFKQPDIDGDDRISRAEFNMYVKNYLSNYPGLSEKDYPKFEDFDHDGDGFVSFQEYAQQMALQAQQAELEQMYGGGNAAS 228
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|1210522084|dbj|GAX19137.1| (hypothetical protein FisN_3Lh079 [Fistulifera solaris]) HSP 1 Score: 83.5741 bits (205), Expect = 8.961e-16 Identity = 58/167 (34.73%), Postives = 90/167 (53.89%), Query Frame = 0 Query: 62 VGALASWSFGQLYYRWQA-KRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSR 227 VG ASW G Y+ +A K++K QK+ +L + Y V + E Q L+ + + Q+E + E + +R EFK PD + D++ISRAEF Y+R Y + +P L + +YP F+DFD DG G VSF E+ Q + L+ ++ E E++ GG + Sbjct: 72 VGCGASWFMGAKYHSSRAVKKVKTKFQKEQKELYSQYYND----VYKLTEQNQELQSAVQQLQQALLQVE---EKHELEALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQM-ALQAQKAEREQMYGGGDNQK 230
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|1072233733|gb|OEU18463.1| (hypothetical protein FRACYDRAFT_260404 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 81.2629 bits (199), Expect = 7.247e-15 Identity = 51/155 (32.90%), Postives = 85/155 (54.84%), Query Frame = 0 Query: 64 ALASWSFGQLYYRWQA-KRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEW-KQFIEELEKKQLEE 216 + +W G ++ +A K LK+ H+ + KL + Y V + G+ L+ + + L+ + E E + +R EFK PD ++D++ISRAEF Y++ Y + +P L + +YP F+DFD DG+G VSF E+ Q + E+ +LEE Sbjct: 92 GITAWVLGAKFHVGRATKELKRKHKSEQKKLYSQYYND----VYKLGDQNSLLQEQIEDLTELVQKTES---KAELEALQRDYDEFKQPDLDSDDRISRAEFSMYVKDYLSNYPGLTEKDYPKFEDFDHDGNGFVSFEEYSTQMAVQAEQAELEE 239
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|1210525539|dbj|GAX15608.1| (hypothetical protein FisN_3Hh079 [Fistulifera solaris]) HSP 1 Score: 80.8777 bits (198), Expect = 8.897e-15 Identity = 57/167 (34.13%), Postives = 90/167 (53.89%), Query Frame = 0 Query: 62 VGALASWSFGQLYYRWQA-KRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIEELEKKQLEEERLAGGAKGSR 227 VG ASW G Y+ +A K++K QK+ +L + Y V + E Q L+ + + Q+E + E + +R EFK PD + D++ISRAEF Y+R Y + +P L + +YP F+DFD DG G VSF E+ Q + L+ ++ E+E++ G + Sbjct: 72 VGCGASWFMGAKYHSSRAVKKVKTKFQKEQKELYSQYYND----VYKLTEQNQELQSAVQQLQQALLQVE---EKHELEALQRDYDEFKQPDIDGDDRISRAEFNMYVRDYLSNYPGLQEKDYPKFEDFDHDGDGYVSFQEYAQQM-ALQAQKAEKEQMYGSGDSQK 230
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|223994983|ref|XP_002287175.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976291|gb|EED94618.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 77.0258 bits (188), Expect = 3.155e-13 Identity = 53/200 (26.50%), Postives = 89/200 (44.50%), Query Frame = 0 Query: 6 SIASLTPVLLVACLAESVKAQVYEQQQYQQQRPRPEFRDIGRKDSGRFWGMMKTGAVGALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNAD---YVDSLIAQLEGILQHPETDPNKRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEW 202 S + TP+ L S+ ++ +Q QR +G+ K A + +++ K+LK+ HQ+ L Y + + Y+ E A+ +D L L + E + +R+ EFK PD + D++ISR EF Y+++Y + +P L + +YP F+DFD D G VSF E+ Sbjct: 65 STLTFTPLHL-----HSISILLHNHNHHQTQR----------------FGLGKVALSSAFTYFLGAKIHSGRAVKKLKKKHQQDQKTLYTQY----------YNDIYKLEEQKAEQQYIIDQLKHSLSETTEKHEMEALQREYDEFKQPDVDGDDRISRTEFNMYVKNYLSNYPGLTEKDYPKFEDFDHDHDGYVSFQEY 233
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|298708691|emb|CBJ49188.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.559 bits (179), Expect = 4.768e-12 Identity = 46/166 (27.71%), Postives = 81/166 (48.80%), Query Frame = 0 Query: 63 GALASWSFGQLYYRWQAKRLKQAHQKKSDKLIASYQQRKEAIVAQFGEAYQALEVNADYVDSLIAQLEGILQHPETD--------------PNKRKV-------AEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEWKQFIE 207 GA+A S + AK+ + +++S IA + + ++A++A+ + L + D + QL + D P R + EFK PD + DN IS+ EF Y+R Y + +P+ A+++ P F+DFDL+ G+VSF EW+ +++ Sbjct: 61 GAIAGASIEWWWSARSAKKGNKLLEQESAAFIAEWNKERDALMARRTYPIKLLAHEVEEADVQLMQLVAAAEDAGVDLGAGGSGLGGGATRPKARSIQQDNMEYEEFKQPDTDGDNVISKTEFYQYIRKYLSLYPDTAEMDIPHFEDFDLNNDGVVSFDEWQMYLD 226
BLAST of EWM29300.1 vs. NCBI_GenBank
Match: gi|397625411|gb|EJK67786.1| (hypothetical protein THAOC_11134 [Thalassiosira oceanica]) HSP 1 Score: 71.633 bits (174), Expect = 1.747e-11 Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 0 Query: 125 LIAQLEGILQHPETDPN----KRKVAEFKLPDANNDNKISRAEFEAYLRSYFAAHPELADVEYPSFDDFDLDGSGLVSFAEW 202 +I QL+ L D +R+ EFK PD + D++ISR EF +Y+++Y + +P L + +YP F+DFD DG G VSF E+ Sbjct: 109 IIEQLQQSLAKTNEDHEMENLQREYDEFKQPDTDGDDRISRTEFVSYVKNYLSNYPGLTEKDYPKFEDFDHDGDGYVSFQEY 190 The following BLAST results are available for this feature:
BLAST of EWM29300.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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