rna1369, rna1369 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1369
Unique Name	rna1369
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	261
Alignment location	CM002457.1:456317..459539 +

Link to JBrowse

Properties


Property Name	Value
Product	ring finger protein
Orig transcript id	gnl\|cribi\|Naga_100152g8.730.mrna
Orig protein id	gnl\|cribi\|Naga_100152g8.730
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:456317..459539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100152g8	gene1323	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1369	rna1369-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29312.1	cds1367	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:456317..459539+
coding sequence from alignment at CM002457.1:456317..459539+

mRNA sequence

>rna1369 ID=rna1369|Name=rna1369|organism=Nannochloropsis gaditana|type=mRNA|length=261bp
ATGCCATCGTCCGAAAATGTTTCTGAGCCCATAGTTGTCCTCGTCACCTG
GAAACGAATACGCACCTTGGCAGCTTTCCTGGAGGAAAATAGATTCTTGA
AGATTCGACACCTCATGAAACGAAATAATCCTAAATTTCAAGTCTTCACG
AACGATAAATGTTTCTCTTCACCTTACAAAGTGTTCAACCGGTATTCGCC
GGTGTCCCCTAAAGATTTCGCTGCTCACAGATTAAAATTGTTATCGAGAA
TGGCGTCGTAG

protein sequence of rna1369

>rna1369-protein ID=rna1369-protein|Name=rna1369|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MLPVLFVLSAVVLNRAFGFPSTIIEATDKGNPPIPWSFGAEKSWDARRGL
VDGQDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGI
CYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSA
TSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGL
GIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAII
VTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARAL
SPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHS
ECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRL
LWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGD
RGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAE
RGGRAVEEGGRGEEGGHGWGGQ

mRNA from alignment at CM002457.1:456317..459539+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1369 ID=rna1369|Name=rna1369|organism=Nannochloropsis gaditana|type=mRNA|length=3223bp|location=Sequence derived from alignment at CM002457.1:456317..459539+ (Nannochloropsis gaditana)
ATAGGACCCCACATGTGTTCCCGTGCCTATTATCCACTGCCAAGCATCTT
TTTCGAATATTTACTCATATATCCTGGTGAAACTTGTCAAAATCGTGAAA
ATAAGCCCTTTGTGTGCGGGTTTACTGGCTTTACTtctgaaagaggagaa
gaagagggggaggaggtcgacggAAAGTCGTGAGCTTTGAATttgtgcct
cctccctcgaaaATTGTCACACAACCGGTATTCGTTATGCATATGGGGCC
CGCAACCGATAATCAAGTATAATCACTGTCAGCTTACGCTATGTAGCTTT
TTGTGGCACGAATTGGCCAATTTTACGGCTGGGTCTTCATGTGGCACGTA
TGTCCTGCTGGTCTGATCGATCAAGCCATTTCTTCTGGCATAACTGGCCA
CTCTTACACTAATGTGCGCTCATCTGACACCTTTCGCTGATGACACCATC
AATAGATCAGGAGCTCCAAACTGTTGTTGAGAAGTGTAACACGCAGCAAG
ACCATGCTGCCTGTTTTGTTTGTTCTGTCTGCTGTGGTCTTGAACAGAGC
CTTCGGGTTTCCTAGCACCATTATAGAGGCTACCGATAAAGGCAATCCTC
CGATTCCATGGTCATTTGGGGCGGAGAAGAGCTGGGACGCTCGTCGCGGA
CTCGTAGATGGCCAAGATGCCGTTTGTGACGCAATCAGCGACTGCACTAG
TTGTTTTCAAGAAGCAGGGTGCGGGTATTGTGGGGGAACCGGCCGTTGCC
TCGCGCAAGCGAGCGCTGATAAGTGCAGCAAAGGGTGGAGCGACACAGGC
ATCTGTTACACATCCTGTCCTGCGGATGCAGCACCATTGCACGAGGCTGC
AGGCGTCATCCAGTTCGGGGCAATGGCCCCTGAGGCGGTGCACTATATCC
CGGGGGAGAGCTGCACCTTCACCATCTGGCCTTTGCCGGGCAGTGGCTCC
GCGACCAGCCCGGGTGCCGGGGCAGGGAATCGTCGGTCTGTCATGATTCG
GTTGCAATTCGAATACCTGGATTTGGGTCCCGGGGATACCTTGAACATCT
ACAGCAATGGTTTGGACGGGCCCAAGATCCTCAGCATTGCGGGGTCAGGC
CTCGGCATCGTGAACCGAACCATTACCAGCCGCTCCAGCTCGGTGATTTT
GCGCCTCCATGCGGAAGGTCCCGTGGGCGGGACGGGGTTTCGCGTCTATT
GGCGGGTCATTGAAAGCTCGCCTTTGGATATTTATTTGATATCAGCGATC
ATAGGTGGGTGTGGGCGGGTGGGAACTCCATGGTTGTCTTTGCGGGGGGT
TGCTGGGAAGCAAAGGTGTTGAATGGTGATCTGTCTGGTGTCGATGCTTC
CGATGATCATGGATCGAGAAGCATGATTGGGGCCATGGAGTCCCTAGGAC
GTCAAGATATGGCAAAGCGCTCGTCTGATTTCACGCCCATATCCACACAT
GAACACATCCCCACCTATGCGAACGCCACGTACCCAgtcacctccatcct
cacGTGCATCCTCTGCTCCTGTTGCTGCAACAACTGCGTGGCCATGTTCT
CTGGTGCCGGCGGTGGGCGGCGGGGTGGGCGGCTCCTTtgggcatgggga
ggggccaaCGCGAGCGCCCCGGCCGCCCGGGCACTTTCCCCGCAAGAGAA
GGCCCGGCTGCCTATAGCCCCTTACGACCCTGGGGAATCGAATTTGTACA
ATTTTCGGGAGTGCTGCATTTGCTTGACAGATTTCGAGCGGACGGATTTG
GTGAGAAAATTGCCCTGTGGGCATGTCTACCACTCGGAGGtgagaagcga
gggagagaggccgaGAGAGCAACGGGAGCGTTCGTGGGAGGATCCGcctg
gtggggaggagcCACGTTTCTGCGTGTTTTCAAGAAGGTATGGCCCTCAG
GCCCTCACATGAagcccattccctccttcccagtgCGTTGATTGCTGGTT
TTCGGTGAACTCCGTCTGCCCGCTCTGCAAGTCCGACGTCCGCGACAAGC
TCGGTGTCGGCgcagagggagcaggcaTGGTCCCCTTCTGGCGCATGCGT
GCGGCCCTTCATCTGATCCAACGGCGGTTGCTCTGGCCCGCCGGtcatct
tctccatctccaccgccctcctcctcacggatctgccctctcctttccag
GCAATCGAGAGgcggaaggtggaaggggaagtgggaACGGCAGGCGGTGG
CTGAACAGCAGGGGGTGGTTAGGCGGGGACCGAGGGGTACTGTCGATCGA
TTGGCAGCCCAGAGCCCCGacggcggaaagggagggggaggagcgttGGC
CGCGATGGGAtcagggcggggagcagaacgtgcgaggggaggaagtcgtA
GTGTTCGAATTTGCACCTGGAGGGgctgagaggggagggcgggcggtgga
ggaagggggccggggcgaggagggaggacatggatgGGGGGGTCAATGAA
GGGAATGGGGGCGGGGACACAGCCGGCGTGGATTTAGAGCGTGGCGACGT
GGACAACcgagcaggtggaggaagggagggtgaggaggacgggaggggga
gggaggagacggggctCCGGGTCCCGCAATGATGCGGCAGCTGGAGGGGG
CAGGCGCAGGGAAAGTGCTGTCTGCGCGTGGAAAGTGCTGTCTGCACATC
ACGGTCAAAGTGGACATAAtgctgggggagaggagattCAAGGCATACGA
CGAGCGCTTCTTAATGTACGGTTGCCGTCGCCGTGAAAGTTTTGGAGTGA
AGAGAGTAAACGGGGAGAAGCTTCGAGTGGGACCTCGCCGAAAGGCGAGT
GCAGGCGCCGCCGCGTGTACATACGTAGGGagcagaaaagaaaaaggctc
TCGTTTATATGTGTGTAtaaaggggggaagattgTCAAGACAGCTAACGG
GCGAGAGTAAGGACACGAAAGTCTGGTGGTAGCGGAGGCCCATACCTGTG
GGAAAGAGCCCCAGCCTCGCCCTTATAGGAACCGGCTTGGATGTGGACGC
AGCGGAAAGTCGCCGCGGCGTGGGGATAATGCCGGGCTTGGTCGCGCGGG
AGGCTGTAGTATAAACAAGGAACCTAGAGGTCTGCTGCCGGATGCTAGGG
ATGCACGGCAGGACGGTCACAAAGCATAGACATGTAAAGAGGATTTTCTA
TGCGGGAAATAAGAGCCAGTCAAATATTCCAGGCGATAAAATAAAGAAAG
AAACAAAAGATGCTTCTTTTCGA

Coding sequence (CDS) from alignment at CM002457.1:456317..459539+

>rna1369 ID=rna1369|Name=rna1369|organism=Nannochloropsis gaditana|type=CDS|length=4707bp|location=Sequence derived from alignment at CM002457.1:456317..459539+ (Nannochloropsis gaditana)
ATGCTGCCTGTTTTGTTTGTTCTGTCTGCTGTGGTCTTGAACAGAGCCTT
CGGGTTTCCTAGCACCATTATAGAGGCTACCGATAAAGGCAATCCTCCGA
TTCCATGGTCATTTGGGGCGGAGAAGAGCTGGGACGCTCGTCGCGGACTC
GTAGATGGCCAAGATGCCGTTTGTGACGCAATCAGCGACTGCACTAGTTG
TTTTCAAGAAGCAGGGTGCGGGTATTGTGGGGGAACCGGCCGTTGCCTCG
CGCAAGCGAGCGCTGATAAGTGCAGCAAAGGGTGGAGCGACACAGGCATC
TGTTACACATCCTGTCCTGCGGATGCAGCACCATTGCACGAGGCTGCAGG
CGTCATCCAGTTCGGGGCAATGGCCCCTGAGGCGGTGCACTATATCCCGG
GGGAGAGCTGCACCTTCACCATCTGGCCTTTGCCGGGCAGTGGCTCCGCG
ACCAGCCCGGGTGCCGGGGCAGGGAATCGTCGGTCTGTCATGATTCGGTT
GCAATTCGAATACCTGGATTTGGGTCCCGGGGATACCTTGAACATCTACA
GCAATGGTTTGGACGGGCCCAAGATCCTCAGCATTGCGGGGTCAGGCCTC
GGCATCGTGAACCGAACCATTACCAGCCGCTCCAGCTCGGTGATTTTGCG
CCTCCATGCGGAAGGTCCCGTGGGCGGGACGGGGTTTCGCGTCTATTGGC
GGGTCATTGAAAGCTCGCCTTTGGATATTTATTTGATATCAGCGATCATA
GtcacctccatcctcacGTGCATCCTCTGCTCCTGTTGCTGCAACAACTG
CGTGGCCATGTTCTCTGGTGCCGGCGGTGGGCGGCGGGGTGGGCGGCTCC
TTtgggcatggggaggggccaaCGCGAGCGCCCCGGCCGCCCGGGCACTT
TCCCCGCAAGAGAAGGCCCGGCTGCCTATAGCCCCTTACGACCCTGGGGA
ATCGAATTTGTACAATTTTCGGGAGTGCTGCATTTGCTTGACAGATTTCG
AGCGGACGGATTTGGTGAGAAAATTGCCCTGTGGGCATGTCTACCACTCG
GAGtgCGTTGATTGCTGGTTTTCGGTGAACTCCGTCTGCCCGCTCTGCAA
GTCCGACGTCCGCGACAAGCTCGGTGTCGGCgcagagggagcaggcaTGG
TCCCCTTCTGGCGCATGCGTGCGGCCCTTCATCTGATCCAACGGCGGTTG
CTCTGGCCCGCCGGtcatcttctccatctccaccgccctcctcctcacgg
atctgccctctcctttccagGCAATCGAGAGgcggaaggtggaaggggaa
gtgggaACGGCAGGCGGTGGCTGAACAGCAGGGGGTGGTTAGGCGGGGAC
CGAGGGGTACTGTCGATCGATTGGCAGCCCAGAGCCCCGacggcggaaag
ggagggggaggagcgttGGCCGCGATGGGAtcagggcggggagcagaacg
tgcgaggggaggaagtcgtAGTGTTCGAATTTGCACCTGGAGGGgctgag
aggggagggcgggcggtggaggaagggggccggggcgaggagggaggaca
tggatgGGGGGGTCAATGAATGCTGCCTGTTTTGTTTGTTCTGTCTGCTG
TGGTCTTGAACAGAGCCTTCGGGTTTCCTAGCACCATTATAGAGGCTACC
GATAAAGGCAATCCTCCGATTCCATGGTCATTTGGGGCGGAGAAGAGCTG
GGACGCTCGTCGCGGACTCGTAGATGGCCAAGATGCCGTTTGTGACGCAA
TCAGCGACTGCACTAGTTGTTTTCAAGAAGCAGGGTGCGGGTATTGTGGG
GGAACCGGCCGTTGCCTCGCGCAAGCGAGCGCTGATAAGTGCAGCAAAGG
GTGGAGCGACACAGGCATCTGTTACACATCCTGTCCTGCGGATGCAGCAC
CATTGCACGAGGCTGCAGGCGTCATCCAGTTCGGGGCAATGGCCCCTGAG
GCGGTGCACTATATCCCGGGGGAGAGCTGCACCTTCACCATCTGGCCTTT
GCCGGGCAGTGGCTCCGCGACCAGCCCGGGTGCCGGGGCAGGGAATCGTC
GGTCTGTCATGATTCGGTTGCAATTCGAATACCTGGATTTGGGTCCCGGG
GATACCTTGAACATCTACAGCAATGGTTTGGACGGGCCCAAGATCCTCAG
CATTGCGGGGTCAGGCCTCGGCATCGTGAACCGAACCATTACCAGCCGCT
CCAGCTCGGTGATTTTGCGCCTCCATGCGGAAGGTCCCGTGGGCGGGACG
GGGTTTCGCGTCTATTGGCGGGTCATTGAAAGCTCGCCTTTGGATATTTA
TTTGATATCAGCGATCATAGtcacctccatcctcacGTGCATCCTCTGCT
CCTGTTGCTGCAACAACTGCGTGGCCATGTTCTCTGGTGCCGGCGGTGGG
CGGCGGGGTGGGCGGCTCCTTtgggcatggggaggggccaaCGCGAGCGC
CCCGGCCGCCCGGGCACTTTCCCCGCAAGAGAAGGCCCGGCTGCCTATAG
CCCCTTACGACCCTGGGGAATCGAATTTGTACAATTTTCGGGAGTGCTGC
ATTTGCTTGACAGATTTCGAGCGGACGGATTTGGTGAGAAAATTGCCCTG
TGGGCATGTCTACCACTCGGAGtgCGTTGATTGCTGGTTTTCGGTGAACT
CCGTCTGCCCGCTCTGCAAGTCCGACGTCCGCGACAAGCTCGGTGTCGGC
gcagagggagcaggcaTGGTCCCCTTCTGGCGCATGCGTGCGGCCCTTCA
TCTGATCCAACGGCGGTTGCTCTGGCCCGCCGGtcatcttctccatctcc
accgccctcctcctcacggatctgccctctcctttccagGCAATCGAGAG
gcggaaggtggaaggggaagtgggaACGGCAGGCGGTGGCTGAACAGCAG
GGGGTGGTTAGGCGGGGACCGAGGGGTACTGTCGATCGATTGGCAGCCCA
GAGCCCCGacggcggaaagggagggggaggagcgttGGCCGCGATGGGAt
cagggcggggagcagaacgtgcgaggggaggaagtcgtAGTGTTCGAATT
TGCACCTGGAGGGgctgagaggggagggcgggcggtggaggaagggggcc
ggggcgaggagggaggacatggatgGGGGGGTCAATGAATGCTGCCTGTT
TTGTTTGTTCTGTCTGCTGTGGTCTTGAACAGAGCCTTCGGGTTTCCTAG
CACCATTATAGAGGCTACCGATAAAGGCAATCCTCCGATTCCATGGTCAT
TTGGGGCGGAGAAGAGCTGGGACGCTCGTCGCGGACTCGTAGATGGCCAA
GATGCCGTTTGTGACGCAATCAGCGACTGCACTAGTTGTTTTCAAGAAGC
AGGGTGCGGGTATTGTGGGGGAACCGGCCGTTGCCTCGCGCAAGCGAGCG
CTGATAAGTGCAGCAAAGGGTGGAGCGACACAGGCATCTGTTACACATCC
TGTCCTGCGGATGCAGCACCATTGCACGAGGCTGCAGGCGTCATCCAGTT
CGGGGCAATGGCCCCTGAGGCGGTGCACTATATCCCGGGGGAGAGCTGCA
CCTTCACCATCTGGCCTTTGCCGGGCAGTGGCTCCGCGACCAGCCCGGGT
GCCGGGGCAGGGAATCGTCGGTCTGTCATGATTCGGTTGCAATTCGAATA
CCTGGATTTGGGTCCCGGGGATACCTTGAACATCTACAGCAATGGTTTGG
ACGGGCCCAAGATCCTCAGCATTGCGGGGTCAGGCCTCGGCATCGTGAAC
CGAACCATTACCAGCCGCTCCAGCTCGGTGATTTTGCGCCTCCATGCGGA
AGGTCCCGTGGGCGGGACGGGGTTTCGCGTCTATTGGCGGGTCATTGAAA
GCTCGCCTTTGGATATTTATTTGATATCAGCGATCATAGtcacctccatc
ctcacGTGCATCCTCTGCTCCTGTTGCTGCAACAACTGCGTGGCCATGTT
CTCTGGTGCCGGCGGTGGGCGGCGGGGTGGGCGGCTCCTTtgggcatggg
gaggggccaaCGCGAGCGCCCCGGCCGCCCGGGCACTTTCCCCGCAAGAG
AAGGCCCGGCTGCCTATAGCCCCTTACGACCCTGGGGAATCGAATTTGTA
CAATTTTCGGGAGTGCTGCATTTGCTTGACAGATTTCGAGCGGACGGATT
TGGTGAGAAAATTGCCCTGTGGGCATGTCTACCACTCGGAGtgCGTTGAT
TGCTGGTTTTCGGTGAACTCCGTCTGCCCGCTCTGCAAGTCCGACGTCCG
CGACAAGCTCGGTGTCGGCgcagagggagcaggcaTGGTCCCCTTCTGGC
GCATGCGTGCGGCCCTTCATCTGATCCAACGGCGGTTGCTCTGGCCCGCC
GGtcatcttctccatctccaccgccctcctcctcacggatctgccctctc
ctttccagGCAATCGAGAGgcggaaggtggaaggggaagtgggaACGGCA
GGCGGTGGCTGAACAGCAGGGGGTGGTTAGGCGGGGACCGAGGGGTACTG
TCGATCGATTGGCAGCCCAGAGCCCCGacggcggaaagggagggggagga
gcgttGGCCGCGATGGGAtcagggcggggagcagaacgtgcgaggggagg
aagtcgtAGTGTTCGAATTTGCACCTGGAGGGgctgagaggggagggcgg
gcggtggaggaagggggccggggcgaggagggaggacatggatgGGGGGG
TCAATGA

Synonyms

Publications