EWM29312.1, cds1367 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|585111836|gb|EWM29312.1| (ring finger protein [Nannochloropsis gaditana]) HSP 1 Score: 1055.43 bits (2728), Expect = 0.000e+0 Identity = 522/522 (100.00%), Postives = 522/522 (100.00%), Query Frame = 0
Query: 1 MLPVLFVLSAVVLNRAFGFPSTIIEATDKGNPPIPWSFGAEKSWDARRGLVDGQDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGICYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWGGQ 522
MLPVLFVLSAVVLNRAFGFPSTIIEATDKGNPPIPWSFGAEKSWDARRGLVDGQDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGICYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWGGQ
Sbjct: 1 MLPVLFVLSAVVLNRAFGFPSTIIEATDKGNPPIPWSFGAEKSWDARRGLVDGQDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGICYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWGGQ 522
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|553188386|ref|XP_005854788.1| (atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >gi|553188595|ref|XP_005854824.1| atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >gi|422294236|gb|EKU21536.1| atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >gi|422294277|gb|EKU21577.1| atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0 Identity = 380/456 (83.33%), Postives = 387/456 (84.87%), Query Frame = 0
Query: 124 MAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYW-----------------------------------------------------RVIESSPLDI------YLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWG 520
MAP AVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSV+LRLHAEGPVGGTGFRVYW R +S+P+ Y + VTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSG+GRRWL+SRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWG
Sbjct: 1 MAPGAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVVLRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIAKVLNGDLSGVDAPDDHGSRSMIGAMESLGRQDMAKRSSDSTPISTHEHIPTYANATYPVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGSGRRWLSSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWG 456
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|873233354|emb|CEM03417.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 88.1965 bits (217), Expect = 1.915e-14 Identity = 89/360 (24.72%), Postives = 143/360 (39.72%), Query Frame = 0
Query: 54 QDAVCDAISDCTSCFQEAGCGYC-------GGTGRCLAQASADKCSKG-------WSDTGI-----------CYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPK---IL---SIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIES--SPLDIYLISAIIVTSILTC---ILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLP--IAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLG 375
Q C +C C + CG+C G + R + + +C G WS + + C +CP++ L G I G+ Y E C + I P G+ ++PG + L E +L PGD L +Y G P IL S+A G V + + +++ +++ G GF V W + +P++ ++I+++++ + C +L C + G G WG S +K R P+ GE C ICLTD+ + D VR+LPC H +H CVD W +++ CPLCK +V + L
Sbjct: 3033 QTDSCLNFGNCVECSSQPTCGFCSAWEVNEGDSERLDKRILSPRCGSGTQGGNFRWSASQLVCRDWKFEITSCNETCPSEIKELRAETGEISHGSE-----DYTLRE-CRWLINPGAGNNGNSAPG---------RLTLTVEMRELLPGDFLKLY-EGTKRPNRRPILDETSVAKPGYSSVMKA----QAPLLVTFNSDEEGEGFGFSVSWTWLPEPFTPMNGWMITSVVLGVLGACAISVLLVVCIKRIRMNMADRGDGVGDNGQQAPWGD----------WSEDDKRRFKEFCKPFKWGEHMEKQQEPCSICLTDYNKGDEVRQLPCCHFFHVTCVDQWLALHLDCPLCKGNVIEMLA 3362
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|444436429|gb|AGE09582.1| (C3HC4Z1-like protein, partial [Eucalyptus cladocalyx]) HSP 1 Score: 72.7886 bits (177), Expect = 9.252e-12 Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 0
Query: 294 APAARALSPQEKARLPIAPYDPGESNL-------YNF------RECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDV 370
A R S + +RLP Y ++NL +N +ECCICL+ ++ + VR+LPC H++H +CVD W + S CPLCK ++
Sbjct: 46 ASVERGASDDQISRLPSWKYKQVDNNLGLGDDSNHNLVLANEDKECCICLSKYKEREEVRQLPCSHMFHQKCVDQWLRITSCCPLCKKEL 135
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|823143664|ref|XP_012471642.1| (PREDICTED: RING-H2 finger protein ATL66-like [Gossypium raimondii]) HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-11 Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0
Query: 290 ANASAPAAR-ALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLP-CGHVYHSECVDCWFSVNSVCPLCKS 368
ANA+ P + L P LPI + GE ECCICL FE ++V+ LP C HVYHS+CVD W S CPLC++
Sbjct: 62 ANATPPGSSLGLDPNAINNLPIILHTKGEET-----ECCICLGVFEEEEMVKVLPQCNHVYHSQCVDKWLGSQSSCPLCRA 137
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|168006640|ref|XP_001756017.1| (predicted protein [Physcomitrella patens] >gi|162692947|gb|EDQ79302.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 77.0258 bits (188), Expect = 1.864e-11 Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 0
Query: 291 NASAPAARALSPQEKAR---------LPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLP-CGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGV 376
NA PA R+ K R LPI + + + N REC +CLTDFE D +R LP C H++H EC+D WF +S CPLC++ + +LGV
Sbjct: 60 NAVTPAERSRILSMKTRGLDKAAVDALPIVHFK--DLDEKNDRECPVCLTDFELEDNLRLLPVCKHIFHQECIDMWFDSHSTCPLCRASLTGQLGV 153
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|1175873111|ref|XP_020590350.1| (E3 ubiquitin-protein ligase At1g63170-like, partial [Phalaenopsis equestris]) HSP 1 Score: 76.6406 bits (187), Expect = 2.732e-11 Identity = 48/137 (35.04%), Postives = 67/137 (48.91%), Query Frame = 0
Query: 258 ILCS--CCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALS-------PQEKARLPIAPYDPG-------ESNLYNFRE--CCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGV 376
ILC+ CCC C+ F G G R R G AS A R+ QE +++ +D G + L +F + CCICL + D +R+LPC H +H+ CVD W +N++CPLCK V D G+
Sbjct: 269 ILCATICCCFPCIISFLGFRGDLRHTR-----GATLASIKAFRSYKFISKRNLNQELSQIISKSHDGGILAVGTDKERLISFDDAVCCICLARYVENDDLRELPCQHFFHTMCVDKWLKINALCPLCKHAVGDAAGL 400
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|388514763|gb|AFK45443.1| (unknown [Lotus japonicus]) HSP 1 Score: 71.633 bits (174), Expect = 2.822e-11 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0
Query: 326 CCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDV 370
CCICL +E D +R+LPC H +H +CVD W +N+ CPLCKS++
Sbjct: 85 CCICLATYENNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEI 129
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|642122908|emb|CDQ63220.1| (unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 75.485 bits (184), Expect = 3.707e-11 Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 0
Query: 269 AMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRD 372
++F + G L A+ + A + LS +E RLP YDP S +C IC +D+ +L+R LPC H YH +C+D W NS CP+C+ D+ +
Sbjct: 237 SLFDDSQGDNYEA--LLAFEEGQGAVVAKKTLSEREIERLPTKTYDPAHS--AGKTQCQICFSDYTEGELLRMLPCLHNYHMQCIDRWLKENSTCPICRIDISE 336
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|1050635540|ref|XP_017640827.1| (PREDICTED: RING-H2 finger protein ATL66-like [Gossypium arboreum]) HSP 1 Score: 70.8626 bits (172), Expect = 4.847e-11 Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0
Query: 290 ANASAPAAR-ALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLP-CGHVYHSECVDCWFSVNSVCPLCKS 368
ANA+ P + L P LPI + GE ECCICL FE ++V+ LP C HVYHS+CVD W S CPLC++
Sbjct: 62 ANATPPGSSLGLDPNAINNLPIILHTKGEET-----ECCICLGVFEGEEMVKVLPQCNHVYHSQCVDKWLGSQSSCPLCRA 137 The following BLAST results are available for this feature:
BLAST of EWM29312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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