EWM29312.1, cds1367 (CDS) Nannochloropsis gaditana

Overview
NameEWM29312.1
Unique Namecds1367
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:456820..457570 +
Alignment locationCM002457.1:457804..458105 +
Alignment locationCM002457.1:458250..458765 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29312.1
Productring finger protein
Orig transcript idgnl|cribi|Naga_100152g8.730.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:456820..457570 +
CM002457.1supercontigCM002457.1:457804..458105 +
CM002457.1supercontigCM002457.1:458250..458765 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR000859CUB_dom
IPR001841Znf_RING
Homology
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|585111836|gb|EWM29312.1| (ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 1055.43 bits (2728), Expect = 0.000e+0
Identity = 522/522 (100.00%), Postives = 522/522 (100.00%), Query Frame = 0
Query:    1 MLPVLFVLSAVVLNRAFGFPSTIIEATDKGNPPIPWSFGAEKSWDARRGLVDGQDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGICYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWGGQ 522
            MLPVLFVLSAVVLNRAFGFPSTIIEATDKGNPPIPWSFGAEKSWDARRGLVDGQDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGICYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWGGQ
Sbjct:    1 MLPVLFVLSAVVLNRAFGFPSTIIEATDKGNPPIPWSFGAEKSWDARRGLVDGQDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGICYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWGGQ 522          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|553188386|ref|XP_005854788.1| (atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >gi|553188595|ref|XP_005854824.1| atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >gi|422294236|gb|EKU21536.1| atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >gi|422294277|gb|EKU21577.1| atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0
Identity = 380/456 (83.33%), Postives = 387/456 (84.87%), Query Frame = 0
Query:  124 MAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYW-----------------------------------------------------RVIESSPLDI------YLISAIIVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGNGRRWLNSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWG 520
            MAP AVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSV+LRLHAEGPVGGTGFRVYW                                                     R  +S+P+        Y  +   VTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSG+GRRWL+SRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWG
Sbjct:    1 MAPGAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVVLRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIAKVLNGDLSGVDAPDDHGSRSMIGAMESLGRQDMAKRSSDSTPISTHEHIPTYANATYPVTSILTCILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGVGAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPPHGSALSFPGNREAEGGRGSGSGRRWLSSRGWLGGDRGVLSIDWQPRAPTAEREGEERWPRWDQGGEQNVRGEEVVVFEFAPGGAERGGRAVEEGGRGEEGGHGWG 456          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|873233354|emb|CEM03417.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 88.1965 bits (217), Expect = 1.915e-14
Identity = 89/360 (24.72%), Postives = 143/360 (39.72%), Query Frame = 0
Query:   54 QDAVCDAISDCTSCFQEAGCGYC-------GGTGRCLAQASADKCSKG-------WSDTGI-----------CYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPK---IL---SIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIES--SPLDIYLISAIIVTSILTC---ILCSCCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLP--IAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLG 375
            Q   C    +C  C  +  CG+C       G + R   +  + +C  G       WS + +           C  +CP++   L    G I  G+       Y   E C + I P  G+   ++PG          + L  E  +L PGD L +Y  G   P    IL   S+A  G   V +      + +++  +++    G GF V W  +    +P++ ++I+++++  +  C   +L   C        +  G G         WG            S  +K R      P+  GE        C ICLTD+ + D VR+LPC H +H  CVD W +++  CPLCK +V + L 
Sbjct: 3033 QTDSCLNFGNCVECSSQPTCGFCSAWEVNEGDSERLDKRILSPRCGSGTQGGNFRWSASQLVCRDWKFEITSCNETCPSEIKELRAETGEISHGSE-----DYTLRE-CRWLINPGAGNNGNSAPG---------RLTLTVEMRELLPGDFLKLY-EGTKRPNRRPILDETSVAKPGYSSVMKA----QAPLLVTFNSDEEGEGFGFSVSWTWLPEPFTPMNGWMITSVVLGVLGACAISVLLVVCIKRIRMNMADRGDGVGDNGQQAPWGD----------WSEDDKRRFKEFCKPFKWGEHMEKQQEPCSICLTDYNKGDEVRQLPCCHFFHVTCVDQWLALHLDCPLCKGNVIEMLA 3362          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|444436429|gb|AGE09582.1| (C3HC4Z1-like protein, partial [Eucalyptus cladocalyx])

HSP 1 Score: 72.7886 bits (177), Expect = 9.252e-12
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 0
Query:  294 APAARALSPQEKARLPIAPYDPGESNL-------YNF------RECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDV 370
            A   R  S  + +RLP   Y   ++NL       +N       +ECCICL+ ++  + VR+LPC H++H +CVD W  + S CPLCK ++
Sbjct:   46 ASVERGASDDQISRLPSWKYKQVDNNLGLGDDSNHNLVLANEDKECCICLSKYKEREEVRQLPCSHMFHQKCVDQWLRITSCCPLCKKEL 135          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|823143664|ref|XP_012471642.1| (PREDICTED: RING-H2 finger protein ATL66-like [Gossypium raimondii])

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-11
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0
Query:  290 ANASAPAAR-ALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLP-CGHVYHSECVDCWFSVNSVCPLCKS 368
            ANA+ P +   L P     LPI  +  GE       ECCICL  FE  ++V+ LP C HVYHS+CVD W    S CPLC++
Sbjct:   62 ANATPPGSSLGLDPNAINNLPIILHTKGEET-----ECCICLGVFEEEEMVKVLPQCNHVYHSQCVDKWLGSQSSCPLCRA 137          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|168006640|ref|XP_001756017.1| (predicted protein [Physcomitrella patens] >gi|162692947|gb|EDQ79302.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 77.0258 bits (188), Expect = 1.864e-11
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 0
Query:  291 NASAPAARALSPQEKAR---------LPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLP-CGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGV 376
            NA  PA R+     K R         LPI  +   + +  N REC +CLTDFE  D +R LP C H++H EC+D WF  +S CPLC++ +  +LGV
Sbjct:   60 NAVTPAERSRILSMKTRGLDKAAVDALPIVHFK--DLDEKNDRECPVCLTDFELEDNLRLLPVCKHIFHQECIDMWFDSHSTCPLCRASLTGQLGV 153          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|1175873111|ref|XP_020590350.1| (E3 ubiquitin-protein ligase At1g63170-like, partial [Phalaenopsis equestris])

HSP 1 Score: 76.6406 bits (187), Expect = 2.732e-11
Identity = 48/137 (35.04%), Postives = 67/137 (48.91%), Query Frame = 0
Query:  258 ILCS--CCCNNCVAMFSGAGGGRRGGRLLWAWGGANASAPAARALS-------PQEKARLPIAPYDPG-------ESNLYNFRE--CCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKLGV 376
            ILC+  CCC  C+  F G  G  R  R     G   AS  A R+          QE +++    +D G       +  L +F +  CCICL  +   D +R+LPC H +H+ CVD W  +N++CPLCK  V D  G+
Sbjct:  269 ILCATICCCFPCIISFLGFRGDLRHTR-----GATLASIKAFRSYKFISKRNLNQELSQIISKSHDGGILAVGTDKERLISFDDAVCCICLARYVENDDLRELPCQHFFHTMCVDKWLKINALCPLCKHAVGDAAGL 400          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|388514763|gb|AFK45443.1| (unknown [Lotus japonicus])

HSP 1 Score: 71.633 bits (174), Expect = 2.822e-11
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 0
Query:  326 CCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDV 370
            CCICL  +E  D +R+LPC H +H +CVD W  +N+ CPLCKS++
Sbjct:   85 CCICLATYENNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEI 129          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|642122908|emb|CDQ63220.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 75.485 bits (184), Expect = 3.707e-11
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 0
Query:  269 AMFSGAGGGRRGGRLLWAWGGANASAPAARALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRD 372
            ++F  + G       L A+     +  A + LS +E  RLP   YDP  S      +C IC +D+   +L+R LPC H YH +C+D W   NS CP+C+ D+ +
Sbjct:  237 SLFDDSQGDNYEA--LLAFEEGQGAVVAKKTLSEREIERLPTKTYDPAHS--AGKTQCQICFSDYTEGELLRMLPCLHNYHMQCIDRWLKENSTCPICRIDISE 336          
BLAST of EWM29312.1 vs. NCBI_GenBank
Match: gi|1050635540|ref|XP_017640827.1| (PREDICTED: RING-H2 finger protein ATL66-like [Gossypium arboreum])

HSP 1 Score: 70.8626 bits (172), Expect = 4.847e-11
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0
Query:  290 ANASAPAAR-ALSPQEKARLPIAPYDPGESNLYNFRECCICLTDFERTDLVRKLP-CGHVYHSECVDCWFSVNSVCPLCKS 368
            ANA+ P +   L P     LPI  +  GE       ECCICL  FE  ++V+ LP C HVYHS+CVD W    S CPLC++
Sbjct:   62 ANATPPGSSLGLDPNAINNLPIILHTKGEET-----ECCICLGVFEGEEMVKVLPQCNHVYHSQCVDKWLGSQSSCPLCRA 137          
The following BLAST results are available for this feature:
BLAST of EWM29312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111836|gb|EWM29312.1|0.000e+0100.00ring finger protein [Nannochloropsis gaditana][more]
gi|553188386|ref|XP_005854788.1|0.000e+083.33atp synthetase alpha chain -like protein [Nannochl... [more]
gi|873233354|emb|CEM03417.1|1.915e-1424.72unnamed protein product [Vitrella brassicaformis C... [more]
gi|444436429|gb|AGE09582.1|9.252e-1236.67C3HC4Z1-like protein, partial [Eucalyptus cladocal... [more]
gi|823143664|ref|XP_012471642.1|1.809e-1145.68PREDICTED: RING-H2 finger protein ATL66-like [Goss... [more]
gi|168006640|ref|XP_001756017.1|1.864e-1141.67predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1175873111|ref|XP_020590350.1|2.732e-1135.04E3 ubiquitin-protein ligase At1g63170-like, partia... [more]
gi|388514763|gb|AFK45443.1|2.822e-1153.33unknown [Lotus japonicus][more]
gi|642122908|emb|CDQ63220.1|3.707e-1134.62unnamed protein product [Oncorhynchus mykiss][more]
gi|1050635540|ref|XP_017640827.1|4.847e-1145.68PREDICTED: RING-H2 finger protein ATL66-like [Goss... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1369rna1369Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications