rna1368, rna1368 (mRNA) Nannochloropsis gaditana

Overview
Namerna1368
Unique Namerna1368
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1400
Alignment locationCM002457.1:455645..455960 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100152g7.725.mrna
Orig protein idgnl|cribi|Naga_100152g7.725
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:455645..455960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100152g7gene1322Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1368rna1368-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29307.1cds1366Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1368 ID=rna1368|Name=rna1368|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp
CATAACACTCGATACCACACAACAGGAGAAACTGACGAGTGTCGCAGGCA
GGAGATACTCGCGGGACTGGTTAGAGCTGTCATCGTCGTCACCGTTGCCC
TCATACGATGCCGCCAACCTGCGGCAGCGGTCTCGTAGGCATTCCACTCC
GCATTGCATGGCCGCCTCCCCATACCCTTCCAATGTCCGCTTACATCTGT
GTACCCGCTCGTCCCGTTTCGTCTTGCATGGTGCCGGCCTTCAGCCATCC
CGCCTATTCCTCAAGGGGCAGGGGCCATATTACTTCAGCTCCCCAGGTCC
GAAATATTGCCCAAGAACGCCACCGTTCCCGCGGTCTTGCCTCCTGTAGC
CTTACAGTTCTTCGCGATCGGACGCTGCGTCGGCTTCTTCCCTCGCAATT
CACGGGGGACCAGTGGAAATACTACTGGGGCATCACGGAGAGCGACAAGT
TCGGCAAGATCTACGAAGCTGCCTCTGCGACGTTCTTCGGGCTTTGGACG
AGCTGGTTTCTGACATTCTTGATCGGTCTGCCCGCAGCCACAGTCCTGGG
CACGGTGTTCTTGTTTTACTGGATTTTGGCCCCGGGCTTGGCTGCCTACC
GGCGGAACGTGAGCTTCCGCGGCACTTACTTCGCCCGGACCCCGCGCGAC
GACGGCGTCTTCGGCGCGCTCTTTAGTGGGAGGGTCGTGCGCGTGGGCCG
CATCCGGCAGGCGAGGGAGTACAACCGGCCCGAGGCCCTGGTCATGTCCA
TGGAGGACGAATCGGGGCGGAAGCTGCGAGTCTACGCGCCAATCTTACCC
AGCTACAAAAAAGTGCGGCCAGGGATGCGGTGCGAGGGGTTGGTCTTGAG
CGAGTCGCCCGACTTCGATGAGCTGATGGGGGTCTCGGACGTCTTTGTAC
CAGACTGCGGGGCCTGGGTGGGCGAGTACCCGTACATCGACAAGGTGCCG
TTTAAAGCCTTCTTGGCGAGCAGGGCGAGGCGAAGGGGCGGGATGGGGGA
GGAGATGGAAGGAAATGAAGGGTTTTGGGAAGAGGAAGGGGTCGGAGGGG
AGGAATATGTGAGACCAGACATGGGTTTCAGGGAGGGTGAGGAGGAGGAA
GGTGATAGCCAGATTTTTGACAGCGACGGGGGAGGCGAGGGGGGCGACGG
GGATGTGTTCGCACGCGTGTGGGAAGAGGCGATGCGAAATGGAAGGAGGA
GACAGACAGAGGAGGAAGAGGGAGCGTTTCTGAGTGAGGAAGACCGTGCC
AGGGTTGTCCGGAGGGGGAGGAGGACAAGGAGAGGCGGGGGGGGACAGGA
AGAAAGCGAGGACTTGTGAAACGAGACACGCATTCGACAGTAAAGATCAT
TCCAGTGGAAAGACCCAAACTATGAAAGTAAAAAACATTTCAATTTTGGC
back to top

protein sequence of rna1368

>rna1368-protein ID=rna1368-protein|Name=rna1368|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MPSSENVSEPIVVLVTWKRIRTLAAFLEENRFLKIRHLMKRNNPKFQVFT
NDKCFSSPYKVFNRYSPVSPKDFAAHRLKLLSRMAS
back to top

mRNA from alignment at CM002457.1:455645..455960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1368 ID=rna1368|Name=rna1368|organism=Nannochloropsis gaditana|type=mRNA|length=316bp|location=Sequence derived from alignment at CM002457.1:455645..455960- (Nannochloropsis gaditana)
ATGCCATCGTCCGAAAATGTTTCTGAGCCCATAGTTGTCCTCGTCACCTG
GAAACGAATACGCACCTTGGCAGCTTTCCTGGAGGAAAATAGATTCTTGA
AGATGTTTTTAAGGAACAAAAATGTTCTGCCGACAAATTAAATTTCATCT
TTATGCGAGTCGACACCTCATGAAACGAAATAATCCTAAATTTCAAGTCT
TCACGAACGATAAATGTTTCTCTTCACCTTACAAAGTGTTCAACCGGTAT
TCGCCGGTGTCCCCTAAAGATTTCGCTGCTCACAGATTAAAATTGTTATC
GAGAATGGCGTCGTAG
back to top

Coding sequence (CDS) from alignment at CM002457.1:455645..455960-

>rna1368 ID=rna1368|Name=rna1368|organism=Nannochloropsis gaditana|type=CDS|length=522bp|location=Sequence derived from alignment at CM002457.1:455645..455960- (Nannochloropsis gaditana)
TCGACACCTCATGAAACGAAATAATCCTAAATTTCAAGTCTTCACGAACG
ATAAATGTTTCTCTTCACCTTACAAAGTGTTCAACCGGTATTCGCCGGTG
TCCCCTAAAGATTTCGCTGCTCACAGATTAAAATTGTTATCGAGAATGGC
GTCGTAGATGCCATCGTCCGAAAATGTTTCTGAGCCCATAGTTGTCCTCG
TCACCTGGAAACGAATACGCACCTTGGCAGCTTTCCTGGAGGAAAATAGA
TTCTTGAAGATTCGACACCTCATGAAACGAAATAATCCTAAATTTCAAGT
CTTCACGAACGATAAATGTTTCTCTTCACCTTACAAAGTGTTCAACCGGT
ATTCGCCGGTGTCCCCTAAAGATTTCGCTGCTCACAGATTAAAATTGTTA
TCGAGAATGGCGTCGTAGATGCCATCGTCCGAAAATGTTTCTGAGCCCAT
AGTTGTCCTCGTCACCTGGAAACGAATACGCACCTTGGCAGCTTTCCTGG
AGGAAAATAGATTCTTGAAGAT
back to top
Synonyms
Publications