rna1362, rna1362 (mRNA) Nannochloropsis gaditana

Overview
Namerna1362
Unique Namerna1362
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length981
Alignment locationCM002457.1:440347..441740 -

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Properties
Property NameValue
Productproteasome subunit
Orig transcript idgnl|cribi|Naga_100152g1.717.mrna
Orig protein idgnl|cribi|Naga_100152g1.717
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:440347..441740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100152g1gene1316Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1362rna1362-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29299.1cds1360Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1362 ID=rna1362|Name=rna1362|organism=Nannochloropsis gaditana|type=mRNA|length=981bp
TGGCCCTCCCCTGTTCCCGCTCAGGCAAAACGCCGTATATCGTACGCACA
CCAACGCTCGTAAGACGATATTCGGCCACAAATTAATGTCGGGTACCATT
TTTCTTTTGCAGGGATCGTCTGTTCCGGTAAAGTCGGTAGGATGCTAAGT
TCCTTTTTCGAGGCGTTCAAGTCCTTCGACGTGAACAAGCTCAAGCCTTT
CCTGAAGATGGCTATCCAGCGCATCCAAATCGCTACCAACAAAAAGACGG
CAGCTGTCAAGATTACACAGCGAGACATTGCAAGCCTCCTTGCACAGCAA
AAGGATGAAAAGGCAGCCATCAAAGTGGAATCCATCATTCGGGAAGATTC
CACCATCGAAGCCTACGGAATATTAGAGCTTGTGTGTGAGCTTTTGCATG
AGCGCGCCCGTCTGATTGCATCCGAGAAAGAGTGCCCGGACGATCTGAAG
TCCGCGGTCGTCACACTGATATGGTCGGCAAACAGAGCAGACATACCCGA
GCTTCAGGAGGTGAAGAAACAGTTCACGAAAAAGTTCGGAAGGGAATTCA
TCGAGCGGGCTGAGAAAGACGAGGACCGACTGGTGAATGAGCGCGTCGCC
CACAAGCTTTCCATACGCCCGCCTTCCGCGGCCATCGTCGAGAAATACCT
CCGGGAAATCGCGCGTTCAAACAACGTGGAATGGACCCCTCTGGAGCAGC
CGTCGCAGCTTAGCCTTGACCAGAAGGCCTTCGCCTCCACGCCTGCCCCT
ACGGGAGTCTCGGTGGCCATGGGGCCCGCCTCGGGGTTCGGACACCTCTA
CACTGCTCCGGGCGGGCCGGGCAGGGCGGAGGGAGGGGCGGAGGGAGGGG
GGGAAGGAGGGACGAGCATGCCCATCGCCCACGCTGTATCCTCTTCGACC
CATCTCGGCCCCGATCCTGGCGCCGGCAAGGCCGACGTGCCGCCTGCCTT
CCAACCTCCTCCCCCCTTTCCTCCCCTACCC
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protein sequence of rna1362

>rna1362-protein ID=rna1362-protein|Name=rna1362|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTA
GPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAV
GDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAI
FYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYL
ALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGEGGR
LEGAKQPRTQKVELYF
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mRNA from alignment at CM002457.1:440347..441740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1362 ID=rna1362|Name=rna1362|organism=Nannochloropsis gaditana|type=mRNA|length=1394bp|location=Sequence derived from alignment at CM002457.1:440347..441740- (Nannochloropsis gaditana)
TTCACCCACTCCCGTGTGCTTGTGTCCACTGAGCCTCTCTATGGTCTTTT
CTCGTCACAGTGATCAGACTTCGGCTGCTTTCCGAATTAATTCCTCTCCT
TCGGCGGCCGTACTGCTGAACGCGCTCCATCCCGACGAGGCCCGTGCATG
CCCAGGAAGTGGACTGGATTGAACCTTGCGGTCAGTATGATGATGGCTTT
CCTGGGTTCTCGTGTAGTGATGTCTTATGTTTTGCTCGTGGTGATCCTTT
GTCTTGGTGTGACCGCTAGTTGACTGCACAATCTCACTTCCCCCCTCCCT
CGTAATTCCCCCCGGCAGTCCACCAGCCTTTTCTTCGTCACACTTTCAGC
TTGCTTGCTTCAGGTCGTTTTCACCAGCAACATGTTCGGAGTCACAGTGA
AAAACAGCGGTATGACAGGAACCGGAACTACCGCAGGTCCCACGAAACGC
ACACATTCCCCAATGGTTACCGGAACCTCGGTCCTGGGCGTGAAGTACAA
CGGTGGAGTCATGTTGGCGGCCGACACCTTGGCCTCGTACGGCTCCTTGG
CGCGCTTCAAGGATGTCACTCGTCTGAATGCAGTGGGGGACTACACGATC
CTGGGCGCGGGGGGAGAGTTCTCGGATTTCCAAGCCATACAGGAGATACT
GGAGAAGATGGACCAGGAGGATAAAAATGCAGACGATGGGTTTTCGCACT
CGCCAGCGGAGCTTTTCAACTACTTGCGGGCGATCTTCTATAGCAAGCGG
AATAAGTTCAATCCGTTGTGGAATGAGGTAAGGGCCGCGGTTGCAGACAG
ACGGGTGGTTGCAGGTCTTCCGGCACGTCGTGACAAGAGCACGCATTAGG
TTGTGTACACCCCATCGATGGTGTGAGTCCTATGCCTAGCACGTGCTTGA
TTGCGGCAGTGCGCACGGCCTTATCCCGCCTTGGGCACACCCCCCAGCAA
GTATGGCCTTGTCCACTGCCCCTCGTATGCGCTGTCCGCAGGCTGATGTC
ATTGGAACACGCTCAAACGCGGGATCCCCTTTCCCTTCCCCTCAGGTCCT
GGTTGGCGGTTTCAAGGACGGGAAGGCCTTCCTCGGTCATTTGGACATGA
TCGGCACCGCCTTCTCGGACGAGGTGATGGCCACCGGCTTCGGGTCCTAC
CTAGCCTTGCCCATCATGCGGAAGCGGTGGCACGCGAACATGACAGAGGG
GGAGGCGCGGGCCCTGTTGGAGGATTGCATGCGCGTCTTATTCTACCGGT
GGGGGCCGCGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGAGGGAGGG
AGGTTGGAAGGAGCGAAGCAACCGAGGACACAAAAAGTGGAGCTGTATTT
TTGACCACCACCGACGGCGGCATCTCGCACTCGCTCAGCTTGCC
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Coding sequence (CDS) from alignment at CM002457.1:440347..441740-

>rna1362 ID=rna1362|Name=rna1362|organism=Nannochloropsis gaditana|type=CDS|length=2403bp|location=Sequence derived from alignment at CM002457.1:440347..441740- (Nannochloropsis gaditana)
GTCCTGGTTGGCGGTTTCAAGGACGGGAAGGCCTTCCTCGGTCATTTGGA
CATGATCGGCACCGCCTTCTCGGACGAGGTGATGGCCACCGGCTTCGGGT
CCTACCTAGCCTTGCCCATCATGCGGAAGCGGTGGCACGCGAACATGACA
GAGGGGGAGGCGCGGGCCCTGTTGGAGGATTGCATGCGCGTCTTATTCTA
CCGGTGGGGGCCGCGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGAGG
GAGGGAGGTTGGAAGGAGCGAAGCAACCGAGGACACAAAAAGTGGAGCTG
TATTTTTGATCCACCAGCCTTTTCTTCGTCACACTTTCAGCTTGCTTGCT
TCAGGTCGTTTTCACCAGCAACATGTTCGGAGTCACAGTGAAAAACAGCG
GTATGACAGGAACCGGAACTACCGCAGGTCCCACGAAACGCACACATTCC
CCAATGGTTACCGGAACCTCGGTCCTGGGCGTGAAGTACAACGGTGGAGT
CATGTTGGCGGCCGACACCTTGGCCTCGTACGGCTCCTTGGCGCGCTTCA
AGGATGTCACTCGTCTGAATGCAGTGGGGGACTACACGATCCTGGGCGCG
GGGGGAGAGTTCTCGGATTTCCAAGCCATACAGGAGATACTGGAGAAGAT
GGACCAGGAGGATAAAAATGCAGACGATGGGTTTTCGCACTCGCCAGCGG
AGCTTTTCAACTACTTGCGGGCGATCTTCTATAGCAAGCGGAATAAGTTC
AATCCGTTGTGGAATGAGATGCCCAGGAAGTGGACTGGATTGAACCTTGC
GGTCCTGGTTGGCGGTTTCAAGGACGGGAAGGCCTTCCTCGGTCATTTGG
ACATGATCGGCACCGCCTTCTCGGACGAGGTGATGGCCACCGGCTTCGGG
TCCTACCTAGCCTTGCCCATCATGCGGAAGCGGTGGCACGCGAACATGAC
AGAGGGGGAGGCGCGGGCCCTGTTGGAGGATTGCATGCGCGTCTTATTCT
ACCGGTGGGGGCCGCGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGAG
GGAGGGAGGTTGGAAGGAGCGAAGCAACCGAGGACACAAAAAGTGGAGCT
GTATTTTTGATCCACCAGCCTTTTCTTCGTCACACTTTCAGCTTGCTTGC
TTCAGGTCGTTTTCACCAGCAACATGTTCGGAGTCACAGTGAAAAACAGC
GGTATGACAGGAACCGGAACTACCGCAGGTCCCACGAAACGCACACATTC
CCCAATGGTTACCGGAACCTCGGTCCTGGGCGTGAAGTACAACGGTGGAG
TCATGTTGGCGGCCGACACCTTGGCCTCGTACGGCTCCTTGGCGCGCTTC
AAGGATGTCACTCGTCTGAATGCAGTGGGGGACTACACGATCCTGGGCGC
GGGGGGAGAGTTCTCGGATTTCCAAGCCATACAGGAGATACTGGAGAAGA
TGGACCAGGAGGATAAAAATGCAGACGATGGGTTTTCGCACTCGCCAGCG
GAGCTTTTCAACTACTTGCGGGCGATCTTCTATAGCAAGCGGAATAAGTT
CAATCCGTTGTGGAATGAGATGCCCAGGAAGTGGACTGGATTGAACCTTG
CGGTCCTGGTTGGCGGTTTCAAGGACGGGAAGGCCTTCCTCGGTCATTTG
GACATGATCGGCACCGCCTTCTCGGACGAGGTGATGGCCACCGGCTTCGG
GTCCTACCTAGCCTTGCCCATCATGCGGAAGCGGTGGCACGCGAACATGA
CAGAGGGGGAGGCGCGGGCCCTGTTGGAGGATTGCATGCGCGTCTTATTC
TACCGGTGGGGGCCGCGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGA
GGGAGGGAGGTTGGAAGGAGCGAAGCAACCGAGGACACAAAAAGTGGAGC
TGTATTTTTGATCCACCAGCCTTTTCTTCGTCACACTTTCAGCTTGCTTG
CTTCAGGTCGTTTTCACCAGCAACATGTTCGGAGTCACAGTGAAAAACAG
CGGTATGACAGGAACCGGAACTACCGCAGGTCCCACGAAACGCACACATT
CCCCAATGGTTACCGGAACCTCGGTCCTGGGCGTGAAGTACAACGGTGGA
GTCATGTTGGCGGCCGACACCTTGGCCTCGTACGGCTCCTTGGCGCGCTT
CAAGGATGTCACTCGTCTGAATGCAGTGGGGGACTACACGATCCTGGGCG
CGGGGGGAGAGTTCTCGGATTTCCAAGCCATACAGGAGATACTGGAGAAG
ATGGACCAGGAGGATAAAAATGCAGACGATGGGTTTTCGCACTCGCCAGC
GGAGCTTTTCAACTACTTGCGGGCGATCTTCTATAGCAAGCGGAATAAGT
TCAATCCGTTGTGGAATGAGATGCCCAGGAAGTGGACTGGATTGAACCTT
GCG
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Synonyms
Publications