EWM29299.1, cds1360 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|585111823|gb|EWM29299.1| (proteasome subunit [Nannochloropsis gaditana]) HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query: 1 MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGEGGRLEGAKQPRTQKVELYF 266
MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGEGGRLEGAKQPRTQKVELYF
Sbjct: 1 MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGEGGRLEGAKQPRTQKVELYF 266
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|553188603|ref|XP_005854825.1| (20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526] >gi|422294237|gb|EKU21537.1| 20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 508.449 bits (1308), Expect = 0.000e+0 Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 0
Query: 1 MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGE 247
MPRKWTGLNLAS SLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGE
Sbjct: 1 MPRKWTGLNLASISLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGE 247
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|676387199|ref|XP_009036878.1| (hypothetical protein AURANDRAFT_69799 [Aureococcus anophagefferens] >gi|323452263|gb|EGB08137.1| hypothetical protein AURANDRAFT_69799 [Aureococcus anophagefferens]) HSP 1 Score: 268.085 bits (684), Expect = 6.589e-87 Identity = 120/194 (61.86%), Postives = 157/194 (80.93%), Query Frame = 0
Query: 39 KNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
+ + + + +A P + T P+VTGTSVLG+KY GVMLAADTLASYGSLA FKDV R++ G YT++GA GE SD+ AI LE +++++ NA+DGF HSP E+++YLRA+ Y RNKFNPLWN ++VGG+KDGKAFLG +D+ GTA+ D+V+ATGFG++LALPIMR +WHA++ EGEARALLEDC+RVLFYR
Sbjct: 10 RANNVVSSSPSAPPRQHTSRPIVTGTSVLGIKYKDGVMLAADTLASYGSLAMFKDVQRISKTGSYTLVGASGEMSDYHAILRKLEGLERDNLNANDGFEHSPVEIYSYLRAVMYQARNKFNPLWNSLVVGGYKDGKAFLGSVDLRGTAYEDDVIATGFGAHLALPIMRAKWHADIDEGEARALLEDCLRVLFYR 203
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|299117057|emb|CBN73828.1| (20S proteasome beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 254.603 bits (649), Expect = 1.519e-81 Identity = 120/189 (63.49%), Postives = 144/189 (76.19%), Query Frame = 0
Query: 45 GTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGF-KDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
T G + T P+VTGTSVLG+KY GVMLAADTLASYGSLAR+K+V RL VG+ T++GA GE+SDFQ I E LE Q D N DDGF SPAE++N LR I Y++RNKFNPLWN +L+ G KDG AFLG +D IGT + D ++ATGFG +LALPI+RK+W ++ EGEARALLEDCMRVLFYR
Sbjct: 16 ATAAMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERLKPVGECTLIGASGEYSDFQHIMETLEDYHQYDVNMDDGFERSPAEIYNLLRTIMYNRRNKFNPLWNYLLIAGCKKDGTAFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYR 204
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|551665955|ref|XP_005835739.1| (20S proteasome subunit beta type 4 [Guillardia theta CCMP2712] >gi|428179890|gb|EKX48759.1| 20S proteasome subunit beta type 4 [Guillardia theta CCMP2712]) HSP 1 Score: 227.254 bits (578), Expect = 3.801e-71 Identity = 101/187 (54.01%), Postives = 140/187 (74.87%), Query Frame = 0
Query: 46 TGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
T A P+ RT P+VTGT VLG+KYNGGVMLA DTL SYGSLARF+ V RL VGD+T++GA G+ SDFQ I +L +M D DDG + +P ++ YL + Y++RNKF+PLWNE++V GF+DGK FLG +D+IGT + D+++AT FG+Y+ LP+MRK N+++ EA+ ++E+C+RVL+YR
Sbjct: 3 TKPVAEPSTRTQQPIVTGTGVLGIKYNGGVMLACDTLGSYGSLARFRTVKRLEKVGDFTVVGASGDLSDFQKISSMLREMSTSDSAYDDGCNMTPRDIHQYLGRVMYNRRNKFDPLWNELVVAGFRDGKPFLGAVDLIGTMYEDDIIATSFGNYVCLPLMRKA-GTNLSKEEAKQVMENCLRVLYYR 188
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|470505617|ref|XP_004348593.1| (proteasome subunit beta type4, putative [Acanthamoeba castellanii str. Neff] >gi|440801110|gb|ELR22135.1| proteasome subunit beta type4, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 225.328 bits (573), Expect = 6.462e-70 Identity = 98/182 (53.85%), Postives = 137/182 (75.27%), Query Frame = 0
Query: 51 GPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
GP+ RT P+ TGTSVL ++Y GVML ADTL SYGSLARF+ +R+ VG+YTILGA GE+SDFQ+ +L+++ D +DG P E+F+YL + Y +RNKF+PLWN+ ++ GF+DGK+FLG +D+ GTAF D +ATG+G+++A P+MRK + +++E EAR +LEDCMRV+FYR
Sbjct: 42 GPSTRTLDPITTGTSVLAIQYKDGVMLTADTLVSYGSLARFRSCSRIKKVGEYTILGASGEYSDFQSTSVMLDELIDRDHAYEDGAKLHPHEIFSYLGRVMYGRRNKFDPLWNQYILAGFRDGKSFLGQVDLYGTAFQDSTLATGYGAHIARPLMRKAYRPDLSEEEARKVLEDCMRVMFYR 223
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|749867304|gb|KIJ37597.1| (hypothetical protein M422DRAFT_69290 [Sphaerobolus stellatus SS14]) HSP 1 Score: 224.557 bits (571), Expect = 1.478e-69 Identity = 104/184 (56.52%), Postives = 142/184 (77.17%), Query Frame = 0
Query: 53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHA----NMTEGEARALLEDCMRVLFYR 232
+RT P+VTGTSVL ++Y GVM+AADTLASYGSLARFKDVTRL+AVGDYTILGAGG+ SDFQ ++ +L + ++ DG + P+E+F L I Y +R+KFNPLWN +LVGGFKDGK+FL ++D++GT + D +ATG+G+Y+ALP++R+ A N++E EAR++L + M+VLFYR
Sbjct: 38 VQRTQQPIVTGTSVLAIRYKDGVMMAADTLASYGSLARFKDVTRLHAVGDYTILGAGGDMSDFQYLKSVLNDLIIDEFTQADGHALGPSEIFEVLSGIMYGRRSKFNPLWNSLLVGGFKDGKSFLAYVDLLGTTYKDNAIATGYGAYIALPLLREIMDAKGPENISEEEARSMLTESMKVLFYR 221
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|646287851|gb|KDQ09738.1| (hypothetical protein BOTBODRAFT_164543 [Botryobasidium botryosum FD-172 SS1]) HSP 1 Score: 222.246 bits (565), Expect = 1.154e-68 Identity = 100/183 (54.64%), Postives = 140/183 (76.50%), Query Frame = 0
Query: 53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHA---NMTEGEARALLEDCMRVLFYR 232
+RT P+VTGTSVL +KY G+M+AAD LASYGSLARFKD+ RL+AVGDYT++GAGG+ SDFQ +Q+IL+ + E+ A+DG PAE++ YL I Y +R+K NPLWN +LVGGFKDGK FLG++D++GT ++ +ATG+G+Y+A P++RK +TE EAR ++++ M+VL+YR
Sbjct: 46 VQRTQQPIVTGTSVLAIKYKDGIMMAADNLASYGSLARFKDIQRLHAVGDYTVIGAGGDMSDFQYLQQILDDLMVEEFAAEDGHPLGPAEIYEYLSQIMYGRRSKINPLWNSLLVGGFKDGKRFLGYVDLLGTTYTASTLATGYGAYIAQPLLRKAVEGREDTLTEEEAREIIKESMKVLYYR 228
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|749824874|gb|KIJ05762.1| (hypothetical protein PAXINDRAFT_103645 [Paxillus involutus ATCC 200175] >gi|749824901|gb|KIJ05773.1| hypothetical protein PAXINDRAFT_103639 [Paxillus involutus ATCC 200175]) HSP 1 Score: 221.861 bits (564), Expect = 1.385e-68 Identity = 99/183 (54.10%), Postives = 138/183 (75.41%), Query Frame = 0
Query: 53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKR---WHANMTEGEARALLEDCMRVLFYR 232
+RT P+VTGTSVL +KY G+M+AAD LASYGSLARFKDV RL+ VG YT++GAGG+ SDFQ IQ ILE++ ++ +A DG P E+ Y+ + Y++R+K NPLWN +++GGFKDGK FL ++D++GT +S +ATG+GSY+ALP++RK + +TE +AR +L++ MRVLFYR
Sbjct: 40 VQRTQQPIVTGTSVLAIKYKDGIMMAADNLASYGSLARFKDVQRLHPVGQYTVIGAGGDMSDFQYIQRILEELSIDEMSAQDGHELGPVEIHEYMSQVMYARRSKINPLWNSLIIGGFKDGKRFLSYVDLLGTTYSASTLATGYGSYIALPLLRKAVEGYEDVLTEEQARKILQESMRVLFYR 222
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|749899851|gb|KIJ67403.1| (hypothetical protein HYDPIDRAFT_127366 [Hydnomerulius pinastri MD-312]) HSP 1 Score: 221.861 bits (564), Expect = 1.684e-68 Identity = 101/183 (55.19%), Postives = 137/183 (74.86%), Query Frame = 0
Query: 53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKR---WHANMTEGEARALLEDCMRVLFYR 232
+RT P+VTGTSVL +KY G+M+AAD LASYGSLARFKDV RL+AVG YT++GAGG+ SDFQ IQ +LE++ E+ A DG P E+ Y+ + Y++R+K NPLWN +++GGFKDGK FL ++D++GT +S +ATG+GSY+A P++RK + +TE +AR +LED MRVLFYR
Sbjct: 40 VQRTQQPIVTGTSVLAIKYKDGIMMAADNLASYGSLARFKDVQRLHAVGGYTVIGAGGDMSDFQYIQRMLEELSIEEIAAQDGHELGPVEIHEYMSQVMYARRSKMNPLWNSLIIGGFKDGKRFLSYVDLLGTTYSASTLATGYGSYIAQPLLRKAVEGYEDLLTEEQARKILEDSMRVLFYR 222 The following BLAST results are available for this feature:
BLAST of EWM29299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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