EWM29299.1, cds1360 (CDS) Nannochloropsis gaditana

Overview
NameEWM29299.1
Unique Namecds1360
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:441561..441593 -
Alignment locationCM002457.1:440964..441422 -
Alignment locationCM002457.1:440387..440695 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29299.1
Productproteasome subunit
Orig transcript idgnl|cribi|Naga_100152g1.717.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:441561..441593 -
CM002457.1supercontigCM002457.1:440964..441422 -
CM002457.1supercontigCM002457.1:440387..440695 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR023333Proteasome_suB-type
IPR016050Proteasome_bsu_CS
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
Homology
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|585111823|gb|EWM29299.1| (proteasome subunit [Nannochloropsis gaditana])

HSP 1 Score: 549.28 bits (1414), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGEGGRLEGAKQPRTQKVELYF 266
            MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGEGGRLEGAKQPRTQKVELYF
Sbjct:    1 MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGEGGRLEGAKQPRTQKVELYF 266          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|553188603|ref|XP_005854825.1| (20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526] >gi|422294237|gb|EKU21537.1| 20S proteasome subunit beta 7, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 508.449 bits (1308), Expect = 0.000e+0
Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 0
Query:    1 MPRKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGE 247
            MPRKWTGLNLAS SLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGE
Sbjct:    1 MPRKWTGLNLASISLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRWGPREGGREGGRKGE 247          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|676387199|ref|XP_009036878.1| (hypothetical protein AURANDRAFT_69799 [Aureococcus anophagefferens] >gi|323452263|gb|EGB08137.1| hypothetical protein AURANDRAFT_69799 [Aureococcus anophagefferens])

HSP 1 Score: 268.085 bits (684), Expect = 6.589e-87
Identity = 120/194 (61.86%), Postives = 157/194 (80.93%), Query Frame = 0
Query:   39 KNSGMTGTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
            + + +  +  +A P + T  P+VTGTSVLG+KY  GVMLAADTLASYGSLA FKDV R++  G YT++GA GE SD+ AI   LE +++++ NA+DGF HSP E+++YLRA+ Y  RNKFNPLWN ++VGG+KDGKAFLG +D+ GTA+ D+V+ATGFG++LALPIMR +WHA++ EGEARALLEDC+RVLFYR
Sbjct:   10 RANNVVSSSPSAPPRQHTSRPIVTGTSVLGIKYKDGVMLAADTLASYGSLAMFKDVQRISKTGSYTLVGASGEMSDYHAILRKLEGLERDNLNANDGFEHSPVEIYSYLRAVMYQARNKFNPLWNSLVVGGYKDGKAFLGSVDLRGTAYEDDVIATGFGAHLALPIMRAKWHADIDEGEARALLEDCLRVLFYR 203          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|299117057|emb|CBN73828.1| (20S proteasome beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 254.603 bits (649), Expect = 1.519e-81
Identity = 120/189 (63.49%), Postives = 144/189 (76.19%), Query Frame = 0
Query:   45 GTGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGF-KDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
             T    G  + T  P+VTGTSVLG+KY  GVMLAADTLASYGSLAR+K+V RL  VG+ T++GA GE+SDFQ I E LE   Q D N DDGF  SPAE++N LR I Y++RNKFNPLWN +L+ G  KDG AFLG +D IGT + D ++ATGFG +LALPI+RK+W  ++ EGEARALLEDCMRVLFYR
Sbjct:   16 ATAAMDGTRQHTSQPIVTGTSVLGIKYKDGVMLAADTLASYGSLARYKNVERLKPVGECTLIGASGEYSDFQHIMETLEDYHQYDVNMDDGFERSPAEIYNLLRTIMYNRRNKFNPLWNYLLIAGCKKDGTAFLGSVDHIGTCYEDNILATGFGGHLALPILRKKWRPDLEEGEARALLEDCMRVLFYR 204          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|551665955|ref|XP_005835739.1| (20S proteasome subunit beta type 4 [Guillardia theta CCMP2712] >gi|428179890|gb|EKX48759.1| 20S proteasome subunit beta type 4 [Guillardia theta CCMP2712])

HSP 1 Score: 227.254 bits (578), Expect = 3.801e-71
Identity = 101/187 (54.01%), Postives = 140/187 (74.87%), Query Frame = 0
Query:   46 TGTTAGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
            T   A P+ RT  P+VTGT VLG+KYNGGVMLA DTL SYGSLARF+ V RL  VGD+T++GA G+ SDFQ I  +L +M   D   DDG + +P ++  YL  + Y++RNKF+PLWNE++V GF+DGK FLG +D+IGT + D+++AT FG+Y+ LP+MRK    N+++ EA+ ++E+C+RVL+YR
Sbjct:    3 TKPVAEPSTRTQQPIVTGTGVLGIKYNGGVMLACDTLGSYGSLARFRTVKRLEKVGDFTVVGASGDLSDFQKISSMLREMSTSDSAYDDGCNMTPRDIHQYLGRVMYNRRNKFDPLWNELVVAGFRDGKPFLGAVDLIGTMYEDDIIATSFGNYVCLPLMRKA-GTNLSKEEAKQVMENCLRVLYYR 188          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|470505617|ref|XP_004348593.1| (proteasome subunit beta type4, putative [Acanthamoeba castellanii str. Neff] >gi|440801110|gb|ELR22135.1| proteasome subunit beta type4, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 225.328 bits (573), Expect = 6.462e-70
Identity = 98/182 (53.85%), Postives = 137/182 (75.27%), Query Frame = 0
Query:   51 GPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYR 232
            GP+ RT  P+ TGTSVL ++Y  GVML ADTL SYGSLARF+  +R+  VG+YTILGA GE+SDFQ+   +L+++   D   +DG    P E+F+YL  + Y +RNKF+PLWN+ ++ GF+DGK+FLG +D+ GTAF D  +ATG+G+++A P+MRK +  +++E EAR +LEDCMRV+FYR
Sbjct:   42 GPSTRTLDPITTGTSVLAIQYKDGVMLTADTLVSYGSLARFRSCSRIKKVGEYTILGASGEYSDFQSTSVMLDELIDRDHAYEDGAKLHPHEIFSYLGRVMYGRRNKFDPLWNQYILAGFRDGKSFLGQVDLYGTAFQDSTLATGYGAHIARPLMRKAYRPDLSEEEARKVLEDCMRVMFYR 223          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|749867304|gb|KIJ37597.1| (hypothetical protein M422DRAFT_69290 [Sphaerobolus stellatus SS14])

HSP 1 Score: 224.557 bits (571), Expect = 1.478e-69
Identity = 104/184 (56.52%), Postives = 142/184 (77.17%), Query Frame = 0
Query:   53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHA----NMTEGEARALLEDCMRVLFYR 232
             +RT  P+VTGTSVL ++Y  GVM+AADTLASYGSLARFKDVTRL+AVGDYTILGAGG+ SDFQ ++ +L  +  ++    DG +  P+E+F  L  I Y +R+KFNPLWN +LVGGFKDGK+FL ++D++GT + D  +ATG+G+Y+ALP++R+   A    N++E EAR++L + M+VLFYR
Sbjct:   38 VQRTQQPIVTGTSVLAIRYKDGVMMAADTLASYGSLARFKDVTRLHAVGDYTILGAGGDMSDFQYLKSVLNDLIIDEFTQADGHALGPSEIFEVLSGIMYGRRSKFNPLWNSLLVGGFKDGKSFLAYVDLLGTTYKDNAIATGYGAYIALPLLREIMDAKGPENISEEEARSMLTESMKVLFYR 221          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|646287851|gb|KDQ09738.1| (hypothetical protein BOTBODRAFT_164543 [Botryobasidium botryosum FD-172 SS1])

HSP 1 Score: 222.246 bits (565), Expect = 1.154e-68
Identity = 100/183 (54.64%), Postives = 140/183 (76.50%), Query Frame = 0
Query:   53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHA---NMTEGEARALLEDCMRVLFYR 232
             +RT  P+VTGTSVL +KY  G+M+AAD LASYGSLARFKD+ RL+AVGDYT++GAGG+ SDFQ +Q+IL+ +  E+  A+DG    PAE++ YL  I Y +R+K NPLWN +LVGGFKDGK FLG++D++GT ++   +ATG+G+Y+A P++RK        +TE EAR ++++ M+VL+YR
Sbjct:   46 VQRTQQPIVTGTSVLAIKYKDGIMMAADNLASYGSLARFKDIQRLHAVGDYTVIGAGGDMSDFQYLQQILDDLMVEEFAAEDGHPLGPAEIYEYLSQIMYGRRSKINPLWNSLLVGGFKDGKRFLGYVDLLGTTYTASTLATGYGAYIAQPLLRKAVEGREDTLTEEEAREIIKESMKVLYYR 228          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|749824874|gb|KIJ05762.1| (hypothetical protein PAXINDRAFT_103645 [Paxillus involutus ATCC 200175] >gi|749824901|gb|KIJ05773.1| hypothetical protein PAXINDRAFT_103639 [Paxillus involutus ATCC 200175])

HSP 1 Score: 221.861 bits (564), Expect = 1.385e-68
Identity = 99/183 (54.10%), Postives = 138/183 (75.41%), Query Frame = 0
Query:   53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKR---WHANMTEGEARALLEDCMRVLFYR 232
             +RT  P+VTGTSVL +KY  G+M+AAD LASYGSLARFKDV RL+ VG YT++GAGG+ SDFQ IQ ILE++  ++ +A DG    P E+  Y+  + Y++R+K NPLWN +++GGFKDGK FL ++D++GT +S   +ATG+GSY+ALP++RK    +   +TE +AR +L++ MRVLFYR
Sbjct:   40 VQRTQQPIVTGTSVLAIKYKDGIMMAADNLASYGSLARFKDVQRLHPVGQYTVIGAGGDMSDFQYIQRILEELSIDEMSAQDGHELGPVEIHEYMSQVMYARRSKINPLWNSLIIGGFKDGKRFLSYVDLLGTTYSASTLATGYGSYIALPLLRKAVEGYEDVLTEEQARKILQESMRVLFYR 222          
BLAST of EWM29299.1 vs. NCBI_GenBank
Match: gi|749899851|gb|KIJ67403.1| (hypothetical protein HYDPIDRAFT_127366 [Hydnomerulius pinastri MD-312])

HSP 1 Score: 221.861 bits (564), Expect = 1.684e-68
Identity = 101/183 (55.19%), Postives = 137/183 (74.86%), Query Frame = 0
Query:   53 TKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKR---WHANMTEGEARALLEDCMRVLFYR 232
             +RT  P+VTGTSVL +KY  G+M+AAD LASYGSLARFKDV RL+AVG YT++GAGG+ SDFQ IQ +LE++  E+  A DG    P E+  Y+  + Y++R+K NPLWN +++GGFKDGK FL ++D++GT +S   +ATG+GSY+A P++RK    +   +TE +AR +LED MRVLFYR
Sbjct:   40 VQRTQQPIVTGTSVLAIKYKDGIMMAADNLASYGSLARFKDVQRLHAVGGYTVIGAGGDMSDFQYIQRMLEELSIEEIAAQDGHELGPVEIHEYMSQVMYARRSKMNPLWNSLIIGGFKDGKRFLSYVDLLGTTYSASTLATGYGSYIAQPLLRKAVEGYEDLLTEEQARKILEDSMRVLFYR 222          
The following BLAST results are available for this feature:
BLAST of EWM29299.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111823|gb|EWM29299.1|0.000e+0100.00proteasome subunit [Nannochloropsis gaditana][more]
gi|553188603|ref|XP_005854825.1|0.000e+099.6020S proteasome subunit beta 7, partial [Nannochlor... [more]
gi|676387199|ref|XP_009036878.1|6.589e-8761.86hypothetical protein AURANDRAFT_69799 [Aureococcus... [more]
gi|299117057|emb|CBN73828.1|1.519e-8163.4920S proteasome beta subunit [Ectocarpus siliculosu... [more]
gi|551665955|ref|XP_005835739.1|3.801e-7154.0120S proteasome subunit beta type 4 [Guillardia the... [more]
gi|470505617|ref|XP_004348593.1|6.462e-7053.85proteasome subunit beta type4, putative [Acanthamo... [more]
gi|749867304|gb|KIJ37597.1|1.478e-6956.52hypothetical protein M422DRAFT_69290 [Sphaerobolus... [more]
gi|646287851|gb|KDQ09738.1|1.154e-6854.64hypothetical protein BOTBODRAFT_164543 [Botryobasi... [more]
gi|749824874|gb|KIJ05762.1|1.385e-6854.10hypothetical protein PAXINDRAFT_103645 [Paxillus i... [more]
gi|749899851|gb|KIJ67403.1|1.684e-6855.19hypothetical protein HYDPIDRAFT_127366 [Hydnomerul... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1362rna1362Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications