rna136, rna136 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna136
Unique Name	rna136
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2084
Alignment location	CM002455.1:355726..357663 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100013g87.9780.mrna
Orig protein id	gnl\|cribi\|Naga_100013g87.9780
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:355726..357663 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g87	gene130	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30492.1	cds136	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna136	rna136-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:355726..357663-
coding sequence from alignment at CM002455.1:355726..357663-

mRNA sequence

>rna136 ID=rna136|Name=rna136|organism=Nannochloropsis gaditana|type=mRNA|length=2084bp
GATCGCTCGCGGTAGGGCTCTGGAGGGTATCTTGCTATGGCGCTCGGGGC
TGCCTTTATGTTCATCGTGTAAGGTTAAAGGACCCGACTCTGGGAAATGG
GACGCTATGACTGCAATAAGTTACATGTTTGAGAGTTTGAAAGTTTTGGG
ATGATTTTTACGGGCTTTTTGAAGGGAGCTAGTGCACAAGCTCACTGGAA
AGGGTCGACTATTTCAAGTGTTCAAGAGTACCCACATTTTACATGACACA
GCCACATTCTCAACGAATGCTTGTTTCTCTCAGACCAAGAAATTACTGAT
AAGGACATTCTTGTAAAGAATTGCCGGCTGCTGTACGCTTTCGTATCTCA
TTCGCGTTCGTTGCCTTCTACGACACCTCCGACCCATTCTAAGCAACCAT
GCATCGGGCACCATTACATAAGGTCGAGGACAAATACCTGCGAGGCAATA
TAAGCCATTCTGCAGAAGAAGCTATGAGGGAAGCAATTGTAACTGATAAC
ATATTGCCACCGCCCCAGCGTAAAAATTTCATGAAGCTTTTCGGGAAGTT
TCTTGAGTCTCGTACCCGTCCGTCTCTAGACTGGACACAGGTTGAGCAAG
TGCCTTCCGAGCAGCTGATGGACTGGGAGGCGCTCCCTAAATGTCCAGAT
GATCAAGCAGTACGTCACGAGCTCTTGGACAAGCTGGTCATTCTCAAGCT
GAACGGAGGACTGGGTACGAGGATGGGATGCACGTTACCCAAGTCTGCCA
TCGAGGTCCGCCAGGACATGACCTTTCTTGACATGACAGTGCGGCAAGTG
GAATATCTGAATTCCTTATATGGGGTAGATGTCCCCTTGTTGCTCATGAA
TTCCTTCAAGACAGACGCAGTCACCTCGCGGCTGTTGAACAAATACCGTC
AGCACAACCTCACTATACACACATTCATGCAGTCATGTTTCCCGCGCATT
GTCAAAGATACTTTACAGCCTCTACCCCAAGGTCCTTTTGCAGAAGAAAA
TGAAGCGGACTGGTACCCGCCAGGGCATGGAGACCTCTTTCAGAGCCTCT
TCCAGTCCGGCTTGCTTGATAATCTAATCGAGCAGGGGAAGGAATACATG
TTCATCAGTAACGTCGACAACTTGGGGGCGACTGTGGATTTGAATCTATT
GTACTTCATTGCAGATAATGACATTGAATTTTGCACTGGTGTGGTCGATC
TTACTAGAGCTGATCAGGACGGAGGGGTCCTTACTACATACAAAGGTAAA
CGTGTGGTGGTGGAGCTGTCGCAGGTTCCAAAGCAGCATCTCGAAACCGT
GGCCAAAAAGTTCACTTTATTCCATACGAACAATATTTGGATCAATTTGC
GAGCATTGCACGCTTTGCTGGTAGAGGAGAAGCTTTCCATTGACCTGGTC
ACGCACGAGCGTGTCGTAGACCGTTTGAAGATCTTGCAGCTCGAGACGAC
AATTGGATCTGTCATTAAGGATTTTTCAAACGTCCTGACTATGAAAGTGC
CGCGGAGCCGATATCTTCCTGTCAAGTCCACCTCTGATCTCTTTTTGGTG
CAGTCCTCTCTATACTCCGTCTCGCGAGGGATGCTCATTCCTAATCCGGG
CCGGCCTTACGCCAAAGATAAGATCCCAATCATAAAGCTTGGGGAACAAT
TCGTCCATATACAGGACTACTTAGAGCGCATACCAAATGGGGTCCCCGAT
CTGCTTGCCTTAGAGCACTTGACGGTGGCAGGAGACGTGGTTTTTGGCGC
GAATGTGACGCTAAAGGGTACTGTCATTATAGTCGCAAACGAAGGGTCCG
TAATCATGATACCTGATAAAACGGTGCTAGAAGATAAGGTCGTTACTGGC
AATCTCCGCATATTGGACCACTAATTTTTTTTTGAATGAAAGAACGTAAT
AAAAGCATACCGATTGTAAACGAGGATAAAAACTGATCATGTGCATGCAA
CGGCAGGTCTCATTTGAACCCCAAAACTTTTTTTTCTTATCCCAGCGAAG
TATTGATAATCATTTCTCTCTGTTTTTTCGACATACTGCAGAGATCTCTA
TACATTGTTTTGTGTCTCCGACAAAATCATCTCA

protein sequence of rna136

>rna136-protein ID=rna136-protein|Name=rna136|organism=Nannochloropsis gaditana|type=polypeptide|length=475bp
MWPIYHLPSFQQEIRSKKRKDTRARPNMEIVSLLTFLSVVALGPYPAAAV
NYFTGLDSFVAMKALGITDGAGVLQKNTLFSFSNSECVHDLHDIGFPFIF
MDLPGATHELANILVETPPNELMSFFNVSDCKSFYSFTAGDSIHDKGNKI
VPSDQASLEDAFWHDQRLPNLRIRNDLQRVVDVFWELRDGSLTEFRVVRL
NSGQEERFRSFLGDIFIFRDAYDDMRLLARTVITDGNKPLILSQTLMGKG
DTETLQLNENQADVWRGRQNTNVARLRQNELQPSTVKKYTGGGFKKMLMP
SYLHTRLLEYLARHEDQRMDEPWHKDDLHVNFYEKMTTIVYTDRDMRDIV
FKTLKPILESWVGGEKLMPTSTYGIRRYYNGSILRDHVDIGRTHIVSAIL
NVRQDVDEVWPLSILDHQGRRHFINMAPGEMCLYESATALHGRTQALRGR
YFDNLFAHFAPAAPFTVNASNKSDK

mRNA from alignment at CM002455.1:355726..357663-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna136 ID=rna136|Name=rna136|organism=Nannochloropsis gaditana|type=mRNA|length=1938bp|location=Sequence derived from alignment at CM002455.1:355726..357663- (Nannochloropsis gaditana)
TAGCCTACACCGCATTTCTTGAAGTTGAGAGCTGACAATCAAGACGAGCT
GGTGGATTTTGTTCATCGACATACGGTGAAGCGGATTTGTTCCGCTTGGA
TGGTTGCACCTTTTTCTATACACCATGTGGCCCATTTACCATCTGCCCTC
ATTCCAACAGGAGATTCGATCGAAAAAAAGAAAAGACACACGTGCCCGTC
CGAATATGGAAATCGTCAGTCTATTAACGTTTTTATCTGTAGTAGCTCTT
GGACCTTATCCAGCAGCTGCTGTAAACTACTTTACTGGCTTAGACTCATT
TGTCGCTATGAAAGCCTTGGGAATCACTGATGGCGCAGGCGTACTACAGA
AAAACACTCTTTTCTCCTTCTCCAACAGTGAATGCGTACACGACTTGCAC
GACATAGGGTTTCCTTTCATTTTCATGGATTTGCCCGGAGCAACTCACGA
GCTGGCAAACATACTTGTGGAAACGCCTCCAAATGAGCTCATGTCATTCT
TCAACGTCAGTGATTGCAAATCCTTCTACTCTTTTACTGCAGGCGATTCC
ATACATGACAAAGGTAATAAAATTGTCCCGTCTGATCAGGCGTCGTTGGA
AGATGCTTTTTGGCATGATCAAAGACTGCCCAACCTTCGCATTCGCAATG
ACTTGCAGCGTGTGGTAGACGTGTTCTGGGAGTTGCGAGACGGATCCTTG
ACAGAGTTTCGGGTCGTGAGACTTAACTCAGGCCAAGAAGAAAGGTTCCG
TTCTTTCTTGGGCGATATTTTCATTTTCCGGGACGCGTATGATGATATGC
GTCTCTTGGCCCGCACTGTCATCACGGACGGGAACAAACCTTTGATTTTG
TCTCAAACGCTGATGGGCAAGGGCGACACAGAAACTTTGCAATTGAATGA
GAACCAGGCCGATGTTTGGCGCGGTAGACAAAACACCAACGTAGCAAGAC
TTCGCCAGAATGAGCTGCAACCCTCTACCGTGAAGAAATACACAGGTGGG
GGGTTCAAGAAGATGCTTATGCCCTCCTATCTTCATACAAGGCTCTTGGA
ATATCTGGCGCGACATGAAGACCAGCGTATGGATGAACCATGGCACAAGG
ACGACTTGCACGTCAATTTCTACGAAAAAATGACAACTATCGTTTACACA
GATCGAGACATGCGCGACATTGTATTCAAGACCCTGAAACCCATTTTGGA
ATCTTGGGTAGGCGGGGAGAAACTCATGCCAACAAGCACCTACGGAATAC
GACGATACTACAATGGAAGCATCTTGCGGGACCATGTTGACATTGGACGC
ACGCACATTGTGTCTGCCATCCTCAACGTACGACAAGATGTGGATGAAGT
ATGGCCGCTGAGCATTTTGGATCACCAAGGACGCCGGCATTTCATTAACA
TGGCTCCGGGGGAAATGTGTCTTTATGAGAGCGCAACGGCCCTGCATGGG
CGAACGCAAGCCCTGCGGGGAAGATATTTCGATAATCTTTTCGCACATTT
CGCTCCCGCAGCTCCTTTCACGGTTAATGCATCAAATAAATCCGATAAGT
AATTATGCATGATCGGGCAGAAAGTAGATGAATAGGATGGGAACAAGCTC
GGCAGGAAGCGGAGTTGATGAAAGCGACATGAGAAACAGATTGTCTAAGA
CACATAACAATATGAATGCTTGTAGAGGTGAAGCAGTGCAGTATGTCGAG
AAAACTGACAAGAAATTGTTTACCGAAGAAACATGAATGAAATGGCGATT
ACGAGGCACATATTACAAATTTTGGGAGTGTTTTGAGATGATTTTGTCGG
AGACACAAAACAATGTATAGAGATCTCTGCAGTATGTCGAAAAAACAGAG
AGAAATGATTATCAATACTTCGCTGGGATAAGAAAAAAAAGTTTTGGGGT
TCAAATGAGACCTGCCGTTGCATGCACATGATCAGTTT

Coding sequence (CDS) from alignment at CM002455.1:355726..357663-

>rna136 ID=rna136|Name=rna136|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at CM002455.1:355726..357663- (Nannochloropsis gaditana)
ATGTGGCCCATTTACCATCTGCCCTCATTCCAACAGGAGATTCGATCGAA
AAAAAGAAAAGACACACGTGCCCGTCCGAATATGGAAATCGTCAGTCTAT
TAACGTTTTTATCTGTAGTAGCTCTTGGACCTTATCCAGCAGCTGCTGTA
AACTACTTTACTGGCTTAGACTCATTTGTCGCTATGAAAGCCTTGGGAAT
CACTGATGGCGCAGGCGTACTACAGAAAAACACTCTTTTCTCCTTCTCCA
ACAGTGAATGCGTACACGACTTGCACGACATAGGGTTTCCTTTCATTTTC
ATGGATTTGCCCGGAGCAACTCACGAGCTGGCAAACATACTTGTGGAAAC
GCCTCCAAATGAGCTCATGTCATTCTTCAACGTCAGTGATTGCAAATCCT
TCTACTCTTTTACTGCAGGCGATTCCATACATGACAAAGGTAATAAAATT
GTCCCGTCTGATCAGGCGTCGTTGGAAGATGCTTTTTGGCATGATCAAAG
ACTGCCCAACCTTCGCATTCGCAATGACTTGCAGCGTGTGGTAGACGTGT
TCTGGGAGTTGCGAGACGGATCCTTGACAGAGTTTCGGGTCGTGAGACTT
AACTCAGGCCAAGAAGAAAGGTTCCGTTCTTTCTTGGGCGATATTTTCAT
TTTCCGGGACGCGTATGATGATATGCGTCTCTTGGCCCGCACTGTCATCA
CGGACGGGAACAAACCTTTGATTTTGTCTCAAACGCTGATGGGCAAGGGC
GACACAGAAACTTTGCAATTGAATGAGAACCAGGCCGATGTTTGGCGCGG
TAGACAAAACACCAACGTAGCAAGACTTCGCCAGAATGAGCTGCAACCCT
CTACCGTGAAGAAATACACAGGTGGGGGGTTCAAGAAGATGCTTATGCCC
TCCTATCTTCATACAAGGCTCTTGGAATATCTGGCGCGACATGAAGACCA
GCGTATGGATGAACCATGGCACAAGGACGACTTGCACGTCAATTTCTACG
AAAAAATGACAACTATCGTTTACACAGATCGAGACATGCGCGACATTGTA
TTCAAGACCCTGAAACCCATTTTGGAATCTTGGGTAGGCGGGGAGAAACT
CATGCCAACAAGCACCTACGGAATACGACGATACTACAATGGAAGCATCT
TGCGGGACCATGTTGACATTGGACGCACGCACATTGTGTCTGCCATCCTC
AACGTACGACAAGATGTGGATGAAGTATGGCCGCTGAGCATTTTGGATCA
CCAAGGACGCCGGCATTTCATTAACATGGCTCCGGGGGAAATGTGTCTTT
ATGAGAGCGCAACGGCCCTGCATGGGCGAACGCAAGCCCTGCGGGGAAGA
TATTTCGATAATCTTTTCGCACATTTCGCTCCCGCAGCTCCTTTCACGGT
TAATGCATCAAATAAATCCGATAAGTAA

Synonyms

Publications