rna1358, rna1358 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1358
Unique Name	rna1358
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1053
Alignment location	CM002457.1:431600..434077 +

Link to JBrowse

Properties


Property Name	Value
Product	crossover junction endonuclease
Orig transcript id	gnl\|cribi\|Naga_100136g17.3173.mrna
Orig protein id	gnl\|cribi\|Naga_100136g17.3173
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:431600..434077 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100136g17	gene1312	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1358	rna1358-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29322.1	cds1356	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:431600..434077+
coding sequence from alignment at CM002457.1:431600..434077+

mRNA sequence

>rna1358 ID=rna1358|Name=rna1358|organism=Nannochloropsis gaditana|type=mRNA|length=1053bp
TATGGGCCCGACCGTGGTCAGGGCACAACCTATCCACGGCGTCCGGACAA
CCCGCTTTTGGACGCCAGAAACGGTAGCTGGTCTGTCATTCAGAAAAACA
CCGTTTTCATATACTCTCAAGAGGTCCCTTTCTTTGCTTGGGCTGCTTGC
GCGCAGCCTCAACAAGAAGACAAAGCCTCTCGCTACGCGAATTCCATACA
AATTAAGACCCCCTTCCTTAACGGCCAGGTACGAAAACTAACCATGAAGA
AATTCGGCTTTGTGCTGATTGTGCTTCTTGCGATGTTGGCTGCTGCCGGA
GCAGCCATGAAACACAAAGAGTGGACTGATGCGGAGTTACAGGCCTTGGA
AACTTCGTGGGAGGCAAACGACTCGGAAGAGGAGCTCGACTCATTTGAAC
GCCGTCATCGACTTATTTCGGAGATGCACAAGAACAAGAAAGACACTGAT
GACCCTTCTTCTCTTCCCCCTTTGCCTGGGAGCGATAGGGTAATGATGTT
TGTCGAAATGCTTCCCGAGCATTCGTCGAGTGGAAAGGGCTGGTCTAGCA
AGGACACTGAAAAATTGACGAAGAAATGGCGTTCGCTTCTCATCTCTGGT
GGTGTTGACGTGAGGTTGTACAACGCTGATGACAAAGTCCTCATCGACCT
CGAGCGGAGGCTCTTGCCTGACACTAAGGAATTCCTATTCGACCAGCCCG
AGACCAACTTCCTCACTGTGGACAGCATGGACTTGTATCGTGATGGCACC
AAGCGTCCGGTGAAAAATTGAGGGGAGGACGTAGGTGGAAAAGGTAACTG
ACCCCTCATCAAGATGTGCTCAATGCCGCTGGGAGTGAAGACTGTTGCGT
TGGTACGGGAGGCATGTAGGATAAGGCGACTCTTTGTGCATCATCTCAAG
ATAGGAAGCCTGTGAGCTCGACGCACTTAAACCGTAGAAAAAATCAAAAT
TACTGGCTGGTCAGTTTTCTTTTCATTTACGGCTCAGTATAATGATCAAA
TCAAATGAAAGCCCTAGTCGGCATGAAAAGGAACCTGAAGAGTTGTCGTC
GGA

protein sequence of rna1358

>rna1358-protein ID=rna1358-protein|Name=rna1358|organism=Nannochloropsis gaditana|type=polypeptide|length=681bp
MEEDASSIKVWNNRLVAYVKTLELGAARRGSQLRYTYKSVAKALAKHPTR
VTTAEEARQLKGVGPTIGRQLENFIVNTLHAEAHAPKSPLPSDRAKADDK
AVSVDEASFSVAYLDEMMEDLLVASQTSTCSANTEAQYPLEDPNREMGTN
PDTWSSRVDAPGCQSTDLSDANLLVVSDDESHECEGHGREEEGGKNKENL
NVFPGAIERSAPWSSHEARRIHVVDVSDGESDGAIGGTCTGLDEGEEGEG
GRATGGEGKDVHEVIGTGGERQASGSSSPRVPDGKGRKRKFFSRPEWQGG
VEVEGVMGKGCQDVVGGRWWEESKVADVQGPSSRSLLDRLEETFGGTRPE
EWEVVALLDRVEHENNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEG
RLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPD
LASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTA
LISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLN
SEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCR
KTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSITEE
EAVAALAVLPVPGQRQSVGRVAATNIYHVYR

mRNA from alignment at CM002457.1:431600..434077+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1358 ID=rna1358|Name=rna1358|organism=Nannochloropsis gaditana|type=mRNA|length=2478bp|location=Sequence derived from alignment at CM002457.1:431600..434077+ (Nannochloropsis gaditana)
CTGTTACCGCTTACATCATTTCAACGCTTTATATCAGCTTCAGAACCTTC
CCAGCCTTagcgaaggagagcgaggccatGCTCACGGGGCGCAAGGCAGC
CAGGTAGTCCGGTAGCGACCACATTCCAGCTATTGAATTACTTCCATTTC
ATCGGCTTCCTGAAGACaccatggaggaagatgctTCTTCGATCAAGGTA
TGGAATAACAGGCTTGTGGCTTATGTCAAGACTTTGGAGCTTGGAGCAGC
AAGACGAGGTacgcacacacacacacacacacacacacacacgccATACG
GAGGAGTTGGGCAGCCTTTTCGCCTTTTCCATTTACGATCAAATACATGC
TCGCAGGTTCTCAGCTTCGATATACCTACAAATCTGTGGCTAAGGCACTA
GCAAAACATCCAACGCGTGTGACCACAGCTGAGGAGGCTCGGCAGTTAAA
AGGCGTGGGCCCTACAATCGGAAGGCAGCTTGAGAATTTCATCGTCAATA
CACTGCATGCGGAAGCACACGCTCCCAAAAGCCCTTTACCCTCCGATAGA
GCAAAGGCAGATGATAAGGCTGTGAGTGTTGATGAAGCTAGTTTCTCTGT
GGCATATCTCGACGAAATGATGGAGGACCTGCTCGTGGCCTCCCAGACTT
CCACCTGTAGCGCCAACACGGAAGCTCAATACCCACTCGAGGACCCAAAC
CGTGAAATGGGCACTAACCCTGACACTTGGAGCTCTCGAGTGGATGCGCC
TGGATGCCAATCGACTGATCTAAGCGATGCGAACCTCCTGGTCGTAAGCG
ACGATGAATCCCATGAGTGTGAGGGgcacgggcgggaggaggagggaggg
aagaacaaggagaatTTGAACGTTTTTCCGGGAGCGATTGAACGGTCTGC
GCCGTGGAGCTCACACGAAGCGCGCCGAATACATGTAGTGGATGTCAGTG
ACGGCGAAAGTGATGGCGCGATCGGAGGCACGTGCACGGGcttggacgag
ggcgaggagggcgagggagggagggcgacgggaggggaagggaaggacgt
aCATGAAGTCATAGGCACAGGGGGAGAGCGACAGGCATCAGGAAGCTCTT
CACCCCGAGTCCCGGACGGGAAGGGCCGCAAGCGCAAGTTTTTCTCCCGG
CCCGAGTGGCAGGGAGGTGTTGAAGTGGAAGGTGTGATGGGGAAAGGATG
CCAAGAcgtggtgggcgggaggtggtgggaggaaagcaaggtGGCGGACG
TACAAGGACCCTCCTCGCGGAGCCTTTTGGACAGGCTGGAAGAGACGTTC
GGGGGGACGCGGCCAGAGGAGTGGGAAGTGGTGGCTTTGCTGGACCGCGT
CGAGCACGAGAACAACCCAAGCATCGAAGCCACGCTCCTGCAGGCAGGGA
TATGTTGCGAGGTCCGGGTGCTGCGGCTGGCGGATGTTTTGTGGGTGGCG
CgacggagggcggagggaaggctcggaggggacgggggggggcgagcagC
GCCCGGCATTGCTGTCGAGCCCGGGAACGCCGGCAGCatgcgggagggcg
ggcatcccaaggaggaggaggaagagatcaTGCTCCGGTACATGATCGAG
CGGAAGACAGTGCCAGACCTGGCATCCAGCATCAAGGACGGTCGGTACCG
GGAACAGAAGGGCCGCATGCTCGgtgttgggagggagatcgATCGCGCCT
TCTATTTGGTGGAGGGGCGCTTGGAGCAATTGAATGACGCGATTCGACCG
GCGGCCTTGCGAACCGCCCTGATCAGCACCCAGGTCGTCCATGGAATGCC
TGTCTTGCAAACAGCCTCCTTAGACCAGACCATTGCCCTGCTCCAGCGCA
TGCATACCCGGATTTCGCACGAGTTCGCGCACTTTCTGCAAGCTGCATGT
GGGCACAACAGGCTGAATTCGGAAGGTGACTTCTTGCCGGCAACGGAATC
CTTTGATGGTGTGGCGCAGTCCGAGCGCTTGTCTGAGTACTTGCAGAAGC
ACTCGAAGACCTTTCCCTTGCCTGCCTCTCGCATCATCCCCCTGGCCGAA
TACCAGCACCTATGCCGGAAGACGGTGGGGAATCTCTCCGTGCGGGCGAT
GTTCACGGCGCAGCTCTGCGCGATAGACAAGGTGAGCGAGGCCAAAAGCA
AGGCCGTGGTCAACGCCTATTCCACCCCATCCCGTCTGGCTCTGGCCATG
CAATCCatcacggaggaagaggcagtaGCTGCCCTGGCGGTCTTGCCTGT
CCCAGGTCAGAGGCAGTCCGTAGGCAGGGTAGCCGCAACCAATATTTACC
ACGTGTATCGATAAATGCGATACGGGGGGTTGAGTTGTTGAGTTGTGGGG
CCAAAACTGCGCAAGAAACATGGACAAAAATGTACACTTGTAGGATGAGT
GCAACTGTGAATGGTGGGAACGGTACGAGCAATTTTTGCTTCACGGAAAT
ACAAATCTTTGAAAGCGTAACGTCTTCG

Coding sequence (CDS) from alignment at CM002457.1:431600..434077+

>rna1358 ID=rna1358|Name=rna1358|organism=Nannochloropsis gaditana|type=CDS|length=4092bp|location=Sequence derived from alignment at CM002457.1:431600..434077+ (Nannochloropsis gaditana)
atggaggaagatgctTCTTCGATCAAGGTATGGAATAACAGGCTTGTGGC
TTATGTCAAGACTTTGGAGCTTGGAGCAGCAAGACGAGGTTCTCAGCTTC
GATATACCTACAAATCTGTGGCTAAGGCACTAGCAAAACATCCAACGCGT
GTGACCACAGCTGAGGAGGCTCGGCAGTTAAAAGGCGTGGGCCCTACAAT
CGGAAGGCAGCTTGAGAATTTCATCGTCAATACACTGCATGCGGAAGCAC
ACGCTCCCAAAAGCCCTTTACCCTCCGATAGAGCAAAGGCAGATGATAAG
GCTGTGAGTGTTGATGAAGCTAGTTTCTCTGTGGCATATCTCGACGAAAT
GATGGAGGACCTGCTCGTGGCCTCCCAGACTTCCACCTGTAGCGCCAACA
CGGAAGCTCAATACCCACTCGAGGACCCAAACCGTGAAATGGGCACTAAC
CCTGACACTTGGAGCTCTCGAGTGGATGCGCCTGGATGCCAATCGACTGA
TCTAAGCGATGCGAACCTCCTGGTCGTAAGCGACGATGAATCCCATGAGT
GTGAGGGgcacgggcgggaggaggagggagggaagaacaaggagaatTTG
AACGTTTTTCCGGGAGCGATTGAACGGTCTGCGCCGTGGAGCTCACACGA
AGCGCGCCGAATACATGTAGTGGATGTCAGTGACGGCGAAAGTGATGGCG
CGATCGGAGGCACGTGCACGGGcttggacgagggcgaggagggcgaggga
gggagggcgacgggaggggaagggaaggacgtaCATGAAGTCATAGGCAC
AGGGGGAGAGCGACAGGCATCAGGAAGCTCTTCACCCCGAGTCCCGGACG
GGAAGGGCCGCAAGCGCAAGTTTTTCTCCCGGCCCGAGTGGCAGGGAGGT
GTTGAAGTGGAAGGTGTGATGGGGAAAGGATGCCAAGAcgtggtgggcgg
gaggtggtgggaggaaagcaaggtGGCGGACGTACAAGGACCCTCCTCGC
GGAGCCTTTTGGACAGGCTGGAAGAGACGTTCGGGGGGACGCGGCCAGAG
GAGTGGGAAGTGGTGGCTTTGCTGGACCGCGTCGAGCACGAGAACAACCC
AAGCATCGAAGCCACGCTCCTGCAGGCAGGGATATGTTGCGAGGTCCGGG
TGCTGCGGCTGGCGGATGTTTTGTGGGTGGCGCgacggagggcggaggga
aggctcggaggggacgggggggggcgagcagCGCCCGGCATTGCTGTCGA
GCCCGGGAACGCCGGCAGCatgcgggagggcgggcatcccaaggaggagg
aggaagagatcaTGCTCCGGTACATGATCGAGCGGAAGACAGTGCCAGAC
CTGGCATCCAGCATCAAGGACGGTCGGTACCGGGAACAGAAGGGCCGCAT
GCTCGgtgttgggagggagatcgATCGCGCCTTCTATTTGGTGGAGGGGC
GCTTGGAGCAATTGAATGACGCGATTCGACCGGCGGCCTTGCGAACCGCC
CTGATCAGCACCCAGGTCGTCCATGGAATGCCTGTCTTGCAAACAGCCTC
CTTAGACCAGACCATTGCCCTGCTCCAGCGCATGCATACCCGGATTTCGC
ACGAGTTCGCGCACTTTCTGCAAGCTGCATGTGGGCACAACAGGCTGAAT
TCGGAAGGTGACTTCTTGCCGGCAACGGAATCCTTTGATGGTGTGGCGCA
GTCCGAGCGCTTGTCTGAGTACTTGCAGAAGCACTCGAAGACCTTTCCCT
TGCCTGCCTCTCGCATCATCCCCCTGGCCGAATACCAGCACCTATGCCGG
AAGACGGTGGGGAATCTCTCCGTGCGGGCGATGTTCACGGCGCAGCTCTG
CGCGATAGACAAGGTGAGCGAGGCCAAAAGCAAGGCCGTGGTCAACGCCT
ATTCCACCCCATCCCGTCTGGCTCTGGCCATGCAATCCatcacggaggaa
gaggcagtaGCTGCCCTGGCGGTCTTGCCTGTCCCAGGTCAGAGGCAGTC
CGTAGGCAGGGTAGCCGCAACCAATATTTACCACGTGTATCGATAAatgg
aggaagatgctTCTTCGATCAAGGTATGGAATAACAGGCTTGTGGCTTAT
GTCAAGACTTTGGAGCTTGGAGCAGCAAGACGAGGTTCTCAGCTTCGATA
TACCTACAAATCTGTGGCTAAGGCACTAGCAAAACATCCAACGCGTGTGA
CCACAGCTGAGGAGGCTCGGCAGTTAAAAGGCGTGGGCCCTACAATCGGA
AGGCAGCTTGAGAATTTCATCGTCAATACACTGCATGCGGAAGCACACGC
TCCCAAAAGCCCTTTACCCTCCGATAGAGCAAAGGCAGATGATAAGGCTG
TGAGTGTTGATGAAGCTAGTTTCTCTGTGGCATATCTCGACGAAATGATG
GAGGACCTGCTCGTGGCCTCCCAGACTTCCACCTGTAGCGCCAACACGGA
AGCTCAATACCCACTCGAGGACCCAAACCGTGAAATGGGCACTAACCCTG
ACACTTGGAGCTCTCGAGTGGATGCGCCTGGATGCCAATCGACTGATCTA
AGCGATGCGAACCTCCTGGTCGTAAGCGACGATGAATCCCATGAGTGTGA
GGGgcacgggcgggaggaggagggagggaagaacaaggagaatTTGAACG
TTTTTCCGGGAGCGATTGAACGGTCTGCGCCGTGGAGCTCACACGAAGCG
CGCCGAATACATGTAGTGGATGTCAGTGACGGCGAAAGTGATGGCGCGAT
CGGAGGCACGTGCACGGGcttggacgagggcgaggagggcgagggaggga
gggcgacgggaggggaagggaaggacgtaCATGAAGTCATAGGCACAGGG
GGAGAGCGACAGGCATCAGGAAGCTCTTCACCCCGAGTCCCGGACGGGAA
GGGCCGCAAGCGCAAGTTTTTCTCCCGGCCCGAGTGGCAGGGAGGTGTTG
AAGTGGAAGGTGTGATGGGGAAAGGATGCCAAGAcgtggtgggcgggagg
tggtgggaggaaagcaaggtGGCGGACGTACAAGGACCCTCCTCGCGGAG
CCTTTTGGACAGGCTGGAAGAGACGTTCGGGGGGACGCGGCCAGAGGAGT
GGGAAGTGGTGGCTTTGCTGGACCGCGTCGAGCACGAGAACAACCCAAGC
ATCGAAGCCACGCTCCTGCAGGCAGGGATATGTTGCGAGGTCCGGGTGCT
GCGGCTGGCGGATGTTTTGTGGGTGGCGCgacggagggcggagggaaggc
tcggaggggacgggggggggcgagcagCGCCCGGCATTGCTGTCGAGCCC
GGGAACGCCGGCAGCatgcgggagggcgggcatcccaaggaggaggagga
agagatcaTGCTCCGGTACATGATCGAGCGGAAGACAGTGCCAGACCTGG
CATCCAGCATCAAGGACGGTCGGTACCGGGAACAGAAGGGCCGCATGCTC
GgtgttgggagggagatcgATCGCGCCTTCTATTTGGTGGAGGGGCGCTT
GGAGCAATTGAATGACGCGATTCGACCGGCGGCCTTGCGAACCGCCCTGA
TCAGCACCCAGGTCGTCCATGGAATGCCTGTCTTGCAAACAGCCTCCTTA
GACCAGACCATTGCCCTGCTCCAGCGCATGCATACCCGGATTTCGCACGA
GTTCGCGCACTTTCTGCAAGCTGCATGTGGGCACAACAGGCTGAATTCGG
AAGGTGACTTCTTGCCGGCAACGGAATCCTTTGATGGTGTGGCGCAGTCC
GAGCGCTTGTCTGAGTACTTGCAGAAGCACTCGAAGACCTTTCCCTTGCC
TGCCTCTCGCATCATCCCCCTGGCCGAATACCAGCACCTATGCCGGAAGA
CGGTGGGGAATCTCTCCGTGCGGGCGATGTTCACGGCGCAGCTCTGCGCG
ATAGACAAGGTGAGCGAGGCCAAAAGCAAGGCCGTGGTCAACGCCTATTC
CACCCCATCCCGTCTGGCTCTGGCCATGCAATCCatcacggaggaagagg
cagtaGCTGCCCTGGCGGTCTTGCCTGTCCCAGGTCAGAGGCAGTCCGTA
GGCAGGGTAGCCGCAACCAATATTTACCACGTGTATCGATAA

Synonyms

Publications