EWM29322.1, cds1356 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|585111848|gb|EWM29322.1| (crossover junction endonuclease [Nannochloropsis gaditana]) HSP 1 Score: 1397.88 bits (3617), Expect = 0.000e+0 Identity = 681/681 (100.00%), Postives = 681/681 (100.00%), Query Frame = 0
Query: 1 MEEDASSIKVWNNRLVAYVKTLELGAARRGSQLRYTYKSVAKALAKHPTRVTTAEEARQLKGVGPTIGRQLENFIVNTLHAEAHAPKSPLPSDRAKADDKAVSVDEASFSVAYLDEMMEDLLVASQTSTCSANTEAQYPLEDPNREMGTNPDTWSSRVDAPGCQSTDLSDANLLVVSDDESHECEGHGREEEGGKNKENLNVFPGAIERSAPWSSHEARRIHVVDVSDGESDGAIGGTCTGLDEGEEGEGGRATGGEGKDVHEVIGTGGERQASGSSSPRVPDGKGRKRKFFSRPEWQGGVEVEGVMGKGCQDVVGGRWWEESKVADVQGPSSRSLLDRLEETFGGTRPEEWEVVALLDRVEHENNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSITEEEAVAALAVLPVPGQRQSVGRVAATNIYHVYR 681
MEEDASSIKVWNNRLVAYVKTLELGAARRGSQLRYTYKSVAKALAKHPTRVTTAEEARQLKGVGPTIGRQLENFIVNTLHAEAHAPKSPLPSDRAKADDKAVSVDEASFSVAYLDEMMEDLLVASQTSTCSANTEAQYPLEDPNREMGTNPDTWSSRVDAPGCQSTDLSDANLLVVSDDESHECEGHGREEEGGKNKENLNVFPGAIERSAPWSSHEARRIHVVDVSDGESDGAIGGTCTGLDEGEEGEGGRATGGEGKDVHEVIGTGGERQASGSSSPRVPDGKGRKRKFFSRPEWQGGVEVEGVMGKGCQDVVGGRWWEESKVADVQGPSSRSLLDRLEETFGGTRPEEWEVVALLDRVEHENNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSITEEEAVAALAVLPVPGQRQSVGRVAATNIYHVYR
Sbjct: 1 MEEDASSIKVWNNRLVAYVKTLELGAARRGSQLRYTYKSVAKALAKHPTRVTTAEEARQLKGVGPTIGRQLENFIVNTLHAEAHAPKSPLPSDRAKADDKAVSVDEASFSVAYLDEMMEDLLVASQTSTCSANTEAQYPLEDPNREMGTNPDTWSSRVDAPGCQSTDLSDANLLVVSDDESHECEGHGREEEGGKNKENLNVFPGAIERSAPWSSHEARRIHVVDVSDGESDGAIGGTCTGLDEGEEGEGGRATGGEGKDVHEVIGTGGERQASGSSSPRVPDGKGRKRKFFSRPEWQGGVEVEGVMGKGCQDVVGGRWWEESKVADVQGPSSRSLLDRLEETFGGTRPEEWEVVALLDRVEHENNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSITEEEAVAALAVLPVPGQRQSVGRVAATNIYHVYR 681
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|299473215|emb|CBN78791.1| (ERCC4 domain containing protein [Ectocarpus siliculosus]) HSP 1 Score: 129.413 bits (324), Expect = 1.041e-27 Identity = 100/304 (32.89%), Postives = 141/304 (46.38%), Query Frame = 0
Query: 351 EWEVVALLDRVEHENNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSITEEEAVA 654
+WE ++D EHE S++++LLQ GI CE R L L D+LW+ARR GD + E++L Y++ERKT DLASSI DGRY EQK R+ G + R YLVEG L + + PAALRTAL+S+Q G+ V+Q SL T+ L R H I A L+ +C P S + L PA + EY C K G+ +VR + A + S A+++A+V A+ +P L LA++ + +A
Sbjct: 255 QWEAWLIVDNREHEFM-SVQSSLLQKGIRCETRQLPLGDMLWIARR-------GD--------------------------DPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSG--LRRRIYLVEGNLNH-QEQLAPAALRTALVSSQACGGLAVVQCDSLRGTVDFLARTHRHI----ASLLEQSCRRG-----AGLWPVGGSRECSGAGAMLR------------PA---MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAANGDGLA 497
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|698790448|ref|XP_009828256.1| (hypothetical protein H257_05177 [Aphanomyces astaci] >gi|574117104|gb|ETV82587.1| hypothetical protein H257_05177 [Aphanomyces astaci]) HSP 1 Score: 109.768 bits (273), Expect = 1.728e-21 Identity = 75/210 (35.71%), Postives = 100/210 (47.62%), Query Frame = 0
Query: 333 SRSLLDRLEETFGGTRP---EEWEVVALLDR---VEHENNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEF 536
S + L +L T RP E W++V LLD + N E LL+A + CEVR L + D++W+AR AP M +G + +E +L ++ERK + DLASSI D RY EQK R+ G + YLVEG L + IR L+TAL TQV H V AS D+T+ L +H I H F
Sbjct: 249 STTNLSKLIPTVPQVRPNDDEAWDIVLLLDHREMISRTNRSVFERKLLEANVTCEVRALNIGDMIWIAR---------------APT---------RMHQG-----QPQEFVLDVVVERKNISDLASSIVDKRYTEQKARLKESG--LRYVIYLVEGSLASQSTCIRGGGLQTALTRTQVQHNFLVYHGASHDETVGFLAAVHRHIVHHF 427
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|820655418|emb|CED83006.1| (Endonuclease MUS81 [Xanthophyllomyces dendrorhous]) HSP 1 Score: 109.383 bits (272), Expect = 6.395e-21 Identity = 106/376 (28.19%), Postives = 162/376 (43.09%), Query Frame = 0
Query: 344 FGGTRPEEWE-----VVALLDRVEHENNPSIEATLLQ---AGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRIS--HEFAHFLQAACGHNRLNSEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSITEEEA-------VAALAVLPVPGQRQ---------------------SVGRVAATNIYHVYR 681
F +P WE ++ LLD E ++ +A L + G+ + R L + D++W+A+RR DG G EEE++L +++ERK + DL SIKDGR+ EQK R+ G I + YL+E + + + TA+ STQVV G V +T SLD T+ L+ MH I HE A+ +R S +L L YL+ HS + P +I + Y L K+ +L++ ++ L I +S K AVV Y TP L A Q+ EEA V+ +++ P G+RQ S+GR + +Y ++R
Sbjct: 645 FKTMKPITWEAGSYDILLLLDTREVQSRSERDAFLDKIKLTGVDVQGRALPVGDMVWIAKRR-------DGFGTGL----------------------EEEVVLDFVVERKRLDDLIMSIKDGRFHEQKHRLRNSG--IGQVIYLIEDYNVAYQEQVWAPQIATAVSSTQVVEGFFVKRTQSLDATVEYLRCMHDTIKTLHEGANL---TIIPDRNISRSTYL-------------SLQSYLRNHSASTP----HLISYSAYVDLNSKS-NSLTLHELWCRMLLTIQGMSAEKVGAVVEVYRTPMSLWRAFQTAEREEAKLTEATTVSGISLEPGKGKRQQDRVPMAKNLLADTIQGVGRRSIGRALSAKVYELFR 968
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|813233250|ref|XP_012213415.1| (hypothetical protein SPRG_18588 [Saprolegnia parasitica CBS 223.65] >gi|641518670|gb|KDO15876.1| hypothetical protein SPRG_18588 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 103.219 bits (256), Expect = 4.509e-20 Identity = 72/191 (37.70%), Postives = 93/191 (48.69%), Query Frame = 0
Query: 350 EEWEVVALLDR---VEHENNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFA 537
+EWE+V LLD V N E LL+AG+ CEVR L L D++W+ARR GGRA EEE +L ++ERK V DLA SI D RY EQK R+ G + YL+EG L + + AL TAL TQV++ V AS D+T+A L +H F+
Sbjct: 83 DEWEIVLLLDHREMVSRSNKSVFERKLLEAGVTCEVRGLHLGDMMWIARRHRP-----TFGGRAI----------------------EEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAG--LRYVVYLLEGSLA-VETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFS 243
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|669146534|ref|XP_008608829.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530739654|gb|EQC37896.1| hypothetical protein, variant [Saprolegnia diclina VS20]) HSP 1 Score: 102.834 bits (255), Expect = 1.450e-19 Identity = 73/183 (39.89%), Postives = 94/183 (51.37%), Query Frame = 0
Query: 350 EEWEVVALLDRVE--HENNPSI-EATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMH 529
+EWEVV LLD E +NPS+ E LL+AG+ CEVR L L D++W+ARR P GG P EE +L ++ERK V DLA SI D RY EQK R+ G + YL+EG L + + AL TAL TQV++ V AS D+T+A L +H
Sbjct: 274 DEWEVVLLLDHREMVSRSNPSVFERKLLEAGVTCEVRGLHLGDMIWIARRH-------------RPTF------------GGRPI--TEEFVLDVVVERKAVTDLAMSIIDKRYTEQKQRLADTG--LRYVVYLLEGSL-AVETIVSATALATALTRTQVLNNYLVHHAASPDETVAFLSALH 426
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|1173946778|gb|OQR95279.1| (crossover junction endonuclease MUS81-like protein [Achlya hypogyna]) HSP 1 Score: 103.605 bits (257), Expect = 1.657e-19 Identity = 76/190 (40.00%), Postives = 95/190 (50.00%), Query Frame = 0
Query: 350 EEWEVVALLDRVE--HENNPSI-EATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEF 536
+EWEVV LLD E NP++ E LL+A + CEVR L L D+LW+ARR GR G V EE +L ++ERK V DLA SI D RY EQK R+ G + YLVEG L AI A LRTAL TQV++ V A+ D+T+A L +H + F
Sbjct: 263 DEWEVVLLLDHREMLSRRNPAVFERKLLEAHVTCEVRALHLGDMLWIARR-----------GRQDQGRTV-----------------VEEFVLDVVVERKAVTDLALSIIDKRYTEQKQRLAESG--LRYVVYLVEGSLST-ETAIGAAGLRTALTRTQVLNNYLVHHAATADETVAFLAALHWHVVGAF 421
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|585647428|ref|XP_006814047.1| (PREDICTED: crossover junction endonuclease MUS81-like [Saccoglossus kowalevskii]) HSP 1 Score: 103.605 bits (257), Expect = 2.127e-19 Identity = 92/336 (27.38%), Postives = 151/336 (44.94%), Query Frame = 0
Query: 352 WEVVALLDRVEHE--NNPSIEATLL----QAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSITEEEAV-AALAVLPVPGQRQSVGRVAATNIYHVY 680
++V+ +D E ++ S +A LL + GI C+VR L++ D LW+A+ R R PG P +EI+L Y++ERK + DLASSI DGR++EQK R+ G + + YLVE + ++ L+ A+++TQV+ G V +T L Q++A L M + E+A A D+L + +S V S + ++ +E+ + K ++V MF QL I +S K+K+++ Y TP L A I E LA L ++++G + +Y +Y
Sbjct: 362 YDVILCVDNCETAGGSSGSRKANLLPELKKNGIDCDVRKLQVGDFLWIAKERI----------RHMPGCLEIP--------------IAKEIVLDYIVERKRMDDLASSITDGRFKEQKFRLKNCG--LRKPIYLVEDFGSGQHLSVPETTLQQAVVNTQVIDGFYVKRTGELKQSVAYLTVMTRYLQSEYARKTLTAYSK-------DYLDSLDSRPDVHCSHQ----------------QMMMSFSEFDQMTIKNKA-MTVTEMFAKQLMQISGLSAEKAKSILEKYRTPQGLLAAYGGIPENSGKEKLLANLKYGKSQRNLGPSVSRMVYQLY 647
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|669146532|ref|XP_008608828.1| (hypothetical protein SDRG_04914 [Saprolegnia diclina VS20] >gi|530739653|gb|EQC37895.1| hypothetical protein SDRG_04914 [Saprolegnia diclina VS20]) HSP 1 Score: 102.834 bits (255), Expect = 2.564e-19 Identity = 74/191 (38.74%), Postives = 96/191 (50.26%), Query Frame = 0
Query: 350 EEWEVVALLDRVE--HENNPSI-EATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFA 537
+EWEVV LLD E +NPS+ E LL+AG+ CEVR L L D++W+ARR P GG P EE +L ++ERK V DLA SI D RY EQK R+ G + YL+EG L + + AL TAL TQV++ V AS D+T+A L +H E +
Sbjct: 274 DEWEVVLLLDHREMVSRSNPSVFERKLLEAGVTCEVRGLHLGDMIWIARRH-------------RPTF------------GGRPI--TEEFVLDVVVERKAVTDLAMSIIDKRYTEQKQRLADTG--LRYVVYLLEGSLA-VETIVSATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRELS 434
BLAST of EWM29322.1 vs. NCBI_GenBank
Match: gi|919052316|ref|XP_013408123.1| (PREDICTED: crossover junction endonuclease MUS81-like, partial [Lingula anatina]) HSP 1 Score: 100.908 bits (250), Expect = 5.577e-19 Identity = 82/333 (24.62%), Postives = 144/333 (43.24%), Query Frame = 0
Query: 352 WEVVALLDRVEHE---NNPSIEATLLQAGICCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAPGIAVEPGNAGSMREGGHPKEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDAIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDFLPATESFDGVAQSERLSEYLQKHSKTFPLPASRIIPLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLALAMQSI-TEEEAVAALAVLPVPGQRQSVGRVAATNIYHVY 680
+++V +D EH + LL+ G+ C VR L++ D LW+A+ + + PG+ P + E++L Y+IERK + DLA SI DGR++EQK R+ G + + YLVE + +++ AL A+++TQV+ G V +T L +++A L M + + + AC N L+ G S + E S+Y K L+V+ +F L + +S K+ ++ + + T S L +S +E+E LA + +++G + +Y +Y
Sbjct: 150 FDIVLCVDNQEHYGSGKKGDLLPELLKNGVDCNVRKLQVGDFLWIAKEKV----------KHTPGLLQMP--------------KTRELVLDYIIERKRMDDLAGSIIDGRFKEQKFRLKNCG--LRKPIYLVEDYGSAQHFSVKEDALNQAIVNTQVIDGFYVKRTKDLKESVAYLTIMTRYLQSIYKNKCLHACSKNELDENGGESVIDSSVQMLMTYEEFSQYSIKSKA-------------------------LTVKEVFGKMLMQLHGMSGEKALSITDDFPTLSHLVQKYESCASEKEKETLLAKVKFGSMNRNLGAALSKTVYQLY 431 The following BLAST results are available for this feature:
BLAST of EWM29322.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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