rna1357, rna1357 (mRNA) Nannochloropsis gaditana

Overview
Namerna1357
Unique Namerna1357
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1358
Alignment locationCM002457.1:429936..431352 +

Link to JBrowse

Properties
Property NameValue
ProductMesoderm development candidate 2
Orig transcript idgnl|cribi|Naga_100136g15.3177.mrna
Orig protein idgnl|cribi|Naga_100136g15.3177
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:429936..431352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100136g15gene1311Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1357rna1357-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29326.1cds1355Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1357 ID=rna1357|Name=rna1357|organism=Nannochloropsis gaditana|type=mRNA|length=1358bp
AGAGTCGACCACCATCCACCACTCGCTCCTTAGTGTCTTTCCTTTCTTTT
CCATAGATGGGGACTCCCTCTGCATGTAGGACTTTGGTGAGATGAAGTCA
GGCACAAAATCGAGACGTACTTCTTAGTGTGTGATATTTATGTATGGGTG
CATAGTGAAGACGTTCTTTTGTACGGTCAGCGTCTTAACTACATCCCTTG
TCGCTGCCTCCCTTTGCCCTCCTTCATCCACATTTTTACAGGTCACACTC
TCTCCCATCGTTGAGAAATATGTCTAAGCGAGGGTCCGCCGCGAAAGTGG
AGGACACGACTACGCTGAACCTGGGGCCCAAGGCCGCGGAGGGAGAGCAC
GTCTTTGGTGTTGCGCACATCTTTGCCTCATTTAATGATACGTTCGTACA
CGTGACGGATCTCTCAGGACGTGAGACCTTGTCGCGTGTGACGGGCGGCA
TGAAGGTGAAGGCGGATCGTGATGAGGCCTCGCCGTACGCGGCCATGCTT
GCCGCGCAAGACGTAGCTGCCAAGTGCAAGGAGCTTGGCATCACAGCAGT
CCATATTAAAATGCGCGCGACGGGTGGGAACAAGACAAAGTCCCCGGGCC
CCGGGGCCCAGCACGCCTTGCGTGCCCTGGCCCGTTCAGGACTGAAGATC
GGCCGCATCGAAGATGTAACTCCCATCCCCACCGACAGTACCCGCCGAAA
GAGTGGTCGCCGTGGTCGTCGTTTGTAAACAATAAGAAAAATAGTGCGAT
GAGGGGTTGGCCGTGGCTGTTGTTTGGGCAGCACCACGCCGCCCTGCCGC
GACGGGGACGGTGAAGAGCGCGGAGGCGGGGAAATGCATGTTCCTTCCTT
TGTCCTCTTCCCCTGGCCTCTTTTTTCTTGCCTGGGGCCCATGCCTTTTT
TGGTCCTAAATTTGCGGGACTTATCCTCCATAGGTCGAGGGGGGAAAGGA
CCTGAGATGAAAAAAGAAAAAAGCGAAAGAGGGCTCGGCCTCAGGAACAA
CCACACTGTCTGGTGCGCACAAACGAAAAATATCATACTTGCAACGATAT
TGCATTTGTACGTGTAAAAAAAGGGTTTGATATTTCCGCCCCACACACAC
CGTTACATCTTCTCTTTTCCTTATGCAATTCATGCGACCTCGTCCTCATG
GAGGAGCATGTTAGGGATTCCATTGTTTATTGGAAATCGTCGACCAGTCT
CAGGGCACACTAAAGATCCCTCTAACACATGCACATCCAGCAGCAGCTTG
TGTACAAGCTGAAGAAACGAGTCGTCCGTTTTGTTTGCCTCATCCATCTG
TAAATGAGTTGATGTTGAGTATGTCATCCACGAAGGAAAAAAAACACATT
CAATCGCT
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protein sequence of rna1357

>rna1357-protein ID=rna1357-protein|Name=rna1357|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MKKFGFVLIVLLAMLAAAGAAMKHKEWTDAELQALETSWEANDSEEELDS
FERRHRLISEMHKNKKDTDDPSSLPPLPGSDRVMMFVEMLPEHSSSGKGW
SSKDTEKLTKKWRSLLISGGVDVRLYNADDKVLIDLERRLLPDTKEFLFD
QPETNFLTVDSMDLYRDGTKRPVKN
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mRNA from alignment at CM002457.1:429936..431352+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1357 ID=rna1357|Name=rna1357|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp|location=Sequence derived from alignment at CM002457.1:429936..431352+ (Nannochloropsis gaditana)
TATGGGCCCGACCGTGGTCAGGGCACAACCTATCCACGGCGTCCGGACAA
CCCGCTTTTGGACGCCAGAAACGGTAGCTGGTCTGTCATTCAGAAAAACA
CCGTTTTCATATACTCTCAAGAGGTCCCTTTCTTTGCTTGGGCTGCTTGC
GCGCAGCCTCAACAAGAAGACAAAGCCTCTCGCTACGCGAATTCCATACA
AATTAAGACCCCCTTCCTTAACGGCCAGGTACGAAAACTAACCATGAAGA
AATTCGGCTTTGTGCTGATTGTGCTTCTTGCGATGTTGGCTGCTGCCGGA
GCAGCCATGAAACACAAAGAGTGGACTGATGCGGAGTTACAGGCCTTGGA
AACTTCGTGGGAGGCAAACGACTCGGAAGAGGAGCTCGACTCATTTGAAC
GCCGTCATCGACTTATTTCGGAGATGCACAAGAACAAGAAAGACACTGAT
GAGTAAGTGTGTGTTCACTTGTAAGTGATGTGCTTGCGTAGTGTAATCTC
AAAGGGAGCGCGATGTTGCTTGTCCTTTGTCTTCCTGCTGTGACGGTGTA
GACCATGCAGGTGTGGAGGCACGATGGCGTTTTTCATGATTGGACAGCGC
CAGTACTTGTGGCGTGAATGGACTCGCATGGATTTCGATTTGAGCGTAGT
GCGTCACTAACGCGAACACTGTGAAATAACGCAAGCGTCGCTCACTCACC
TCTTATCACTTTTCGTACTCCTTGTCcagcccttcttctcttcccccttt
gcctGGGAGCGATAGGGTAATGATGTTTGTCGAAATGCTTCCCGAGCATT
CGTCGAGTGGAAAGGGCTGGTCTAGCAAGGACACTGAAAAATTGACGAAG
AAATGGCGTTCGGTACGTTGTGGGGTGTAAGGTCTGTTTTCATCATATGA
CGCACCATTCCCTGACCACTGTCTGCATGTGCTCTTCATCTCTTAACAGC
TTCTCATCTCTGGTGGTGTTGACGTGAGGTTGTACAACGCTGATGACAAA
GTCCTCATCGACCTCGAGCGGAGGCTCTTGCCTGACACTAAGGAATTCCT
ATTCGACCAGCCCGAGACCAACTTCCTCACTGTGGACAGCATGGACTTGT
ATCGTGATGGCACCAAGCGTCCGGTGAAAAATTGAGGGGAGGACGTAGGT
GGAAAAGGTAACTGACCCCTCATCAAGATGTGCTCAATGCCGCTGGGAGT
GAAGACTGTTGCGTTGGTACGGGAGGCATGTAGGATAAGGCGACTCTTTG
TGCATCATCTCAAGATAGGAAGCCTGTGAGCTCGACGCACTTAAACCGTa
gaaaaaatcaaaattACTGGCTGGTCAGTTTTCTTTTCATTTACGGCTCA
GTATAATGATCAAATCAAATGAAAGCCCTAGTCGGCATGAAAAGGAACCT
GAAGAGTTGTCGTCGGA
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Coding sequence (CDS) from alignment at CM002457.1:429936..431352+

>rna1357 ID=rna1357|Name=rna1357|organism=Nannochloropsis gaditana|type=CDS|length=1584bp|location=Sequence derived from alignment at CM002457.1:429936..431352+ (Nannochloropsis gaditana)
ATGAAGAAATTCGGCTTTGTGCTGATTGTGCTTCTTGCGATGTTGGCTGC
TGCCGGAGCAGCCATGAAACACAAAGAGTGGACTGATGCGGAGTTACAGG
CCTTGGAAACTTCGTGGGAGGCAAACGACTCGGAAGAGGAGCTCGACTCA
TTTGAACGCCGTCATCGACTTATTTCGGAGATGCACAAGAACAAGAAAGA
CACTGATGAcccttcttctcttccccctttgcctGGGAGCGATAGGGTAA
TGATGTTTGTCGAAATGCTTCCCGAGCATTCGTCGAGTGGAAAGGGCTGG
TCTAGCAAGGACACTGAAAAATTGACGAAGAAATGGCGTTCGCTTCTCAT
CTCTGGTGGTGTTGACGTGAGGTTGTACAACGCTGATGACAAAGTCCTCA
TCGACCTCGAGCGGAGGCTCTTGCCTGACACTAAGGAATTCCTATTCGAC
CAGCCCGAGACCAACTTCCTCACTGTGGACAGCATGGACTTGTATCGTGA
TGGCACCAAGCGTCCGGTGAAAAATTGAATGAAGAAATTCGGCTTTGTGC
TGATTGTGCTTCTTGCGATGTTGGCTGCTGCCGGAGCAGCCATGAAACAC
AAAGAGTGGACTGATGCGGAGTTACAGGCCTTGGAAACTTCGTGGGAGGC
AAACGACTCGGAAGAGGAGCTCGACTCATTTGAACGCCGTCATCGACTTA
TTTCGGAGATGCACAAGAACAAGAAAGACACTGATGAcccttcttctctt
ccccctttgcctGGGAGCGATAGGGTAATGATGTTTGTCGAAATGCTTCC
CGAGCATTCGTCGAGTGGAAAGGGCTGGTCTAGCAAGGACACTGAAAAAT
TGACGAAGAAATGGCGTTCGCTTCTCATCTCTGGTGGTGTTGACGTGAGG
TTGTACAACGCTGATGACAAAGTCCTCATCGACCTCGAGCGGAGGCTCTT
GCCTGACACTAAGGAATTCCTATTCGACCAGCCCGAGACCAACTTCCTCA
CTGTGGACAGCATGGACTTGTATCGTGATGGCACCAAGCGTCCGGTGAAA
AATTGAATGAAGAAATTCGGCTTTGTGCTGATTGTGCTTCTTGCGATGTT
GGCTGCTGCCGGAGCAGCCATGAAACACAAAGAGTGGACTGATGCGGAGT
TACAGGCCTTGGAAACTTCGTGGGAGGCAAACGACTCGGAAGAGGAGCTC
GACTCATTTGAACGCCGTCATCGACTTATTTCGGAGATGCACAAGAACAA
GAAAGACACTGATGAcccttcttctcttccccctttgcctGGGAGCGATA
GGGTAATGATGTTTGTCGAAATGCTTCCCGAGCATTCGTCGAGTGGAAAG
GGCTGGTCTAGCAAGGACACTGAAAAATTGACGAAGAAATGGCGTTCGCT
TCTCATCTCTGGTGGTGTTGACGTGAGGTTGTACAACGCTGATGACAAAG
TCCTCATCGACCTCGAGCGGAGGCTCTTGCCTGACACTAAGGAATTCCTA
TTCGACCAGCCCGAGACCAACTTCCTCACTGTGGACAGCATGGACTTGTA
TCGTGATGGCACCAAGCGTCCGGTGAAAAATTGA
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Synonyms
Publications