EWM29326.1, cds1355 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29326.1 vs. NCBI_GenBank
Match: gi|585111852|gb|EWM29326.1| (Mesoderm development candidate 2 [Nannochloropsis gaditana]) HSP 1 Score: 356.295 bits (913), Expect = 2.218e-124 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MKKFGFVLIVLLAMLAAAGAAMKHKEWTDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDRVMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDKVLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPVKN 175
MKKFGFVLIVLLAMLAAAGAAMKHKEWTDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDRVMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDKVLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPVKN
Sbjct: 1 MKKFGFVLIVLLAMLAAAGAAMKHKEWTDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDRVMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDKVLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPVKN 175
BLAST of EWM29326.1 vs. NCBI_GenBank
Match: gi|1059864219|ref|XP_017798895.1| (PREDICTED: LDLR chaperone boca [Habropoda laboriosa]) HSP 1 Score: 58.151 bits (139), Expect = 3.300e-7 Identity = 51/187 (27.27%), Postives = 84/187 (44.92%), Query Frame = 0
Query: 1 MKKFGFVLIVLLAMLAAAGAAM---KHKEW--------TDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDR-VMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDK--VLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPV 173
M+K V I+ L + A + K K W TDA+L+ L WE ND E D R ++ +K D +P ++ + + VMMFV+ + + S+KD E + + W+S L + + Y D+K V + E D K +L QPE + +T++ +RD K+ +
Sbjct: 1 MRKEIIVCIIFLLLYVDASNDVNSGKKKSWRDKDIRDMTDADLEHLLDQWEENDEPLEPDELPEHLRPSPQIDMSKLDMSNPDNILKMTKKGKGVMMFVD-------TNEDISAKDAEVIMQIWQSSLQNNHIIAERYPIDEKRSVFLFREGSQAVDAKNYLLQQPELSHVTLEGQTYFRDPKKQNI 180
BLAST of EWM29326.1 vs. NCBI_GenBank
Match: gi|915666528|gb|KOC68414.1| (LDLR chaperone boca [Habropoda laboriosa]) HSP 1 Score: 57.7658 bits (138), Expect = 3.414e-7 Identity = 51/185 (27.57%), Postives = 83/185 (44.86%), Query Frame = 0
Query: 1 MKKFGFVLIVLLAMLAAAGAAM---KHKEW--------TDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDR-VMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDK--VLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKR 171
M+K V I+ L + A + K K W TDA+L+ L WE ND E D R ++ +K D +P ++ + + VMMFV+ + + S+KD E + + W+S L + + Y D+K V + E D K +L QPE + +T++ +RD K+
Sbjct: 1 MRKEIIVCIIFLLLYVDASNDVNSGKKKSWRDKDIRDMTDADLEHLLDQWEENDEPLEPDELPEHLRPSPQIDMSKLDMSNPDNILKMTKKGKGVMMFVD-------TNEDISAKDAEVIMQIWQSSLQNNHIIAERYPIDEKRSVFLFREGSQAVDAKNYLLQQPELSHVTLEGQTYFRDPKKQ 178 The following BLAST results are available for this feature:
BLAST of EWM29326.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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