EWM29326.1, cds1355 (CDS) Nannochloropsis gaditana

Overview
NameEWM29326.1
Unique Namecds1355
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:430179..430387 +
Alignment locationCM002457.1:430665..430797 +
Alignment locationCM002457.1:430885..431070 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29326.1
ProductMesoderm development candidate 2
Orig transcript idgnl|cribi|Naga_100136g15.3177.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:430179..430387 +
CM002457.1supercontigCM002457.1:430665..430797 +
CM002457.1supercontigCM002457.1:430885..431070 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR019330Mesoderm_development_cand-2
Homology
BLAST of EWM29326.1 vs. NCBI_GenBank
Match: gi|585111852|gb|EWM29326.1| (Mesoderm development candidate 2 [Nannochloropsis gaditana])

HSP 1 Score: 356.295 bits (913), Expect = 2.218e-124
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MKKFGFVLIVLLAMLAAAGAAMKHKEWTDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDRVMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDKVLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPVKN 175
            MKKFGFVLIVLLAMLAAAGAAMKHKEWTDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDRVMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDKVLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPVKN
Sbjct:    1 MKKFGFVLIVLLAMLAAAGAAMKHKEWTDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDRVMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDKVLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPVKN 175          
BLAST of EWM29326.1 vs. NCBI_GenBank
Match: gi|1059864219|ref|XP_017798895.1| (PREDICTED: LDLR chaperone boca [Habropoda laboriosa])

HSP 1 Score: 58.151 bits (139), Expect = 3.300e-7
Identity = 51/187 (27.27%), Postives = 84/187 (44.92%), Query Frame = 0
Query:    1 MKKFGFVLIVLLAMLAAAGAAM---KHKEW--------TDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDR-VMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDK--VLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKRPV 173
            M+K   V I+ L +   A   +   K K W        TDA+L+ L   WE ND   E D      R   ++  +K D  +P ++  +    + VMMFV+       + +  S+KD E + + W+S L +  +    Y  D+K  V +  E     D K +L  QPE + +T++    +RD  K+ +
Sbjct:    1 MRKEIIVCIIFLLLYVDASNDVNSGKKKSWRDKDIRDMTDADLEHLLDQWEENDEPLEPDELPEHLRPSPQIDMSKLDMSNPDNILKMTKKGKGVMMFVD-------TNEDISAKDAEVIMQIWQSSLQNNHIIAERYPIDEKRSVFLFREGSQAVDAKNYLLQQPELSHVTLEGQTYFRDPKKQNI 180          
BLAST of EWM29326.1 vs. NCBI_GenBank
Match: gi|915666528|gb|KOC68414.1| (LDLR chaperone boca [Habropoda laboriosa])

HSP 1 Score: 57.7658 bits (138), Expect = 3.414e-7
Identity = 51/185 (27.57%), Postives = 83/185 (44.86%), Query Frame = 0
Query:    1 MKKFGFVLIVLLAMLAAAGAAM---KHKEW--------TDAELQALETSWEANDSEEELDSFERRHRLISEMHKNKKDTDDPSSLPPLPGSDR-VMMFVEMLPEHSSSGKGWSSKDTEKLTKKWRSLLISGGVDVRLYNADDK--VLIDLERRLLPDTKEFLFDQPETNFLTVDSMDLYRDGTKR 171
            M+K   V I+ L +   A   +   K K W        TDA+L+ L   WE ND   E D      R   ++  +K D  +P ++  +    + VMMFV+       + +  S+KD E + + W+S L +  +    Y  D+K  V +  E     D K +L  QPE + +T++    +RD  K+
Sbjct:    1 MRKEIIVCIIFLLLYVDASNDVNSGKKKSWRDKDIRDMTDADLEHLLDQWEENDEPLEPDELPEHLRPSPQIDMSKLDMSNPDNILKMTKKGKGVMMFVD-------TNEDISAKDAEVIMQIWQSSLQNNHIIAERYPIDEKRSVFLFREGSQAVDAKNYLLQQPELSHVTLEGQTYFRDPKKQ 178          
The following BLAST results are available for this feature:
BLAST of EWM29326.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111852|gb|EWM29326.1|2.218e-124100.00Mesoderm development candidate 2 [Nannochloropsis ... [more]
gi|1059864219|ref|XP_017798895.1|3.300e-727.27PREDICTED: LDLR chaperone boca [Habropoda laborios... [more]
gi|915666528|gb|KOC68414.1|3.414e-727.57LDLR chaperone boca [Habropoda laboriosa][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1357rna1357Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications