rna1356, rna1356 (mRNA) Nannochloropsis gaditana

Overview
Namerna1356
Unique Namerna1356
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length709
Alignment locationCM002457.1:428131..429766 -

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Properties
Property NameValue
Product40s ribosomal protein s14
Orig transcript idgnl|cribi|Naga_100136g14.3180.mrna
Orig protein idgnl|cribi|Naga_100136g14.3180
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:428131..429766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100136g14gene1310Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1356rna1356-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29329.1cds1354Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1356 ID=rna1356|Name=rna1356|organism=Nannochloropsis gaditana|type=mRNA|length=709bp
CACCACACTACCATCTTGTAGCAAATATGCTCGCCCATGCTTGCTTGCAG
ATTTCTATAGCTTCCTTGTATACTGGCCATGAAAAATCCAATTTCTCAAG
GGAAGGTTGTTTTGATGCTTCTTGTCGGCTGTCTAGAGATATTCTCGCTT
ATTCCGCCCTGCTCTCGACCTCCCCGAATACCTTTAAATTCAACAAAAAA
ATATCACCAACACGCACCCACAACTGTAGTCATGCGGCTGATTACACATA
ATATGCTGAAGAGTAACGTAAAAGGGGTGATCAATGGCTTCCCCCTGAGA
ATAGAGGCTGAGAAGGTGGAAGTGAAGGAGACAGAGTTCAATTCAGAATT
CGTGCAGAACTTACTGCCCAAGGTTGATTGGCCGGCTTTACGAGGGGCAA
GCAAAGAGTTGGGCATGGACGAGCTCCCAGAAGAGATGGATGAGGCAAAC
AAAACGGACGACTCGTTTCTTCAGCTTGTACACAAGCTGCTGCTGGATGT
GCATGTGTTAGAGGGATCTTTAGTGTGCCCTGAGACTGGTCGACGATTTC
CAATAAACAATGGAATCCCTAACATGCTCCTCCATGAGGACGAGGTCGCA
TGAATTGCATAAGGAAAAGAGAAGATGTAACGGTGTGTGTGGGGCGGAAA
TATCAAACCCTTTTTTTACACGTACAAATGCAATATCGTTGCAAGTATGA
TATTTTTCG
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protein sequence of rna1356

>rna1356-protein ID=rna1356-protein|Name=rna1356|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSG
RETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRA
TGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGR
RL
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mRNA from alignment at CM002457.1:428131..429766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1356 ID=rna1356|Name=rna1356|organism=Nannochloropsis gaditana|type=mRNA|length=1636bp|location=Sequence derived from alignment at CM002457.1:428131..429766- (Nannochloropsis gaditana)
AGAGTCGACCACCATCCACCACTCGCTCCTTAGTGTCTTTCCTTTCTTTT
CCATAGATGGGGACTCCCTCTGCATGTAGGACTTTGGTGAGATGAAGTCA
GGCACAAAATCGAGACGTACTTCTTAGTGTGTGATATTTATGTATGGGTG
CATAGTGAAGACGTTCTTTTGTACGGTCAGCGTCTTAACTACATCCCTTG
TCGCTGCCTCCCTTTGCCCTCCTTCATCCACATTTTTACAGGTCACACTC
TCTCCCATCGTTGAGAAATATGGTACGTCCACCCCTGATTTAATCTAAGT
AAAATGAATTTATACTGAATGACCTGTGTTTACATGCGATCCCGTGGGGC
TGTGTTCAATGAATAAGAGTGTCGGGGTTGTCCACGTTTCCCTTTGGATG
TTCAAACCAAGGAGCGAAATTAGATCTCTGTTTTTGTCTTTGAGGTCTGA
TACCTGCAGGAATTGAATAGTCTTTAGAATTGGTTCGTAGGGCTTGGGAA
GTATGTGGTGCCTGATAGGTTTCTGACGTGTAAAACTATCTCCTGCACAG
TCTAAGCGAGGGTCCGCCGCGAAAGTGGAGGACACGACTACGCTGAACCT
GGGGCCCAAGGCCGCGGAGGGAGAGCACGTCTTTGGTGTTGCGCACATCT
TTGCCTCATTTAATGATACGTTCGTACACGTGACGGATCTCTCAGGACGT
GAGACCTTGTCGCGTGTGACGGGCGGCATGAAGGTGAAGGCGGATCGTGA
TGAGGCCTCGCCGTACGCGGCCATGCTTGCCGCGCAAGACGTAGCTGCCA
AGTGCAAGGAGCTTGGCATCACAGCAGTCCATATTAAAATGCGCGCGACG
GGTGGGAACAAGACAAAGTCCCCGGGCCCCGGGGCCCAGCACGCCTTGCG
TGCCCTGGCCCGTTCAGGACTGAAGATCGGCCGCATCGAAGATGTAACTC
CCATCCCCACCGACAGTACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGT
TTGTAAACAATAAGAAAAATAGTGCGATGAGGGGTTGGCCGTGGCTGTTG
TTTGGGCAGCACCACGCCGCCCTGCCGCGACGGGGACGGTGAAGAGCGCG
GAGGCGGGGAAATGCATGTTCCTTCCTTTGTCCTCTTCCCCTGGCCTCTT
TTTTCTTGCCTGGGGCCCATGCCTTTTTTGGTCCTAAATTTGCGGGACTT
ATCCTCCATAGGTCGAGGGGGGAAAGGACCTGAGATGAAAAAAGAAAAAA
GCGAAAGAGGGCTCGGCCTCAGGAACAACCACACTGTCTGGTGCGCACAA
ACGAAAAATATCATACTTGCAACGATATTGCATTTGTACGTGTAAAAAAA
GGGTTTGATATTTCCGCCCCACACACACCGTTACATCTTCTCTTTTCCTT
ATGCAATTCATGCGACCTCGTCCTCATGGAGGAGCATGTTAGGGATTCCA
TTGTTTATTGGAAATCGTCGACCAGTCTCAGGGCACACTAAAGATCCCTC
TAACACATGCACATCCAGCAGCAGCTTGTGTACAAGCTGAAGAAACGAGT
CGTCCGTTTTGTTTGCCTCATCCATCTGTAAATGAGTTGATGTTGAGTAT
GTCATCCACGAAGGAAAAAAAACACATTCAATCGCT
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Coding sequence (CDS) from alignment at CM002457.1:428131..429766-

>rna1356 ID=rna1356|Name=rna1356|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002457.1:428131..429766- (Nannochloropsis gaditana)
TCTAAGCGAGGGTCCGCCGCGAAAGTGGAGGACACGACTACGCTGAACCT
GGGGCCCAAGGCCGCGGAGGGAGAGCACGTCTTTGGTGTTGCGCACATCT
TTGCCTCATTTAATGATACGTTCGTACACGTGACGGATCTCTCAGGACGT
GAGACCTTGTCGCGTGTGACGGGCGGCATGAAGGTGAAGGCGGATCGTGA
TGAGGCCTCGCCGTACGCGGCCATGCTTGCCGCGCAAGACGTAGCTGCCA
AGTGCAAGGAGCTTGGCATCACAGCAGTCCATATTAAAATGCGCGCGACG
GGTGGGAACAAGACAAAGTCCCCGGGCCCCGGGGCCCAGCACGCCTTGCG
TGCCCTGGCCCGTTCAGGACTGAAGATCGGCCGCATCGAAGATGTAACTC
CCATCCCCACCGACAGTACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGT
TTGTAAATGTCTAAGCGAGGGTCCGCCGCGAAAGTGGAGGACACGACTAC
GCTGAACCTGGGGCCCAAGGCCGCGGAGGGAGAGCACGTCTTTGGTGTTG
CGCACATCTTTGCCTCATTTAATGATACGTTCGTACACGTGACGGATCTC
TCAGGACGTGAGACCTTGTCGCGTGTGACGGGCGGCATGAAGGTGAAGGC
GGATCGTGATGAGGCCTCGCCGTACGCGGCCATGCTTGCCGCGCAAGACG
TAGCTGCCAAGTGCAAGGAGCTTGGCATCACAGCAGTCCATATTAAAATG
CGCGCGACGGGTGGGAACAAGACAAAGTCCCCGGGCCCCGGGGCCCAGCA
CGCCTTGCGTGCCCTGGCCCGTTCAGGACTGAAGATCGGCCGCATCGAAG
ATGTAACTCCCATCCCCACCGACAGTACCCGCCGAAAGAGTGGTCGCCGT
GGTCGTCGTTTGTAAATG
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Synonyms
Publications