EWM29329.1, cds1354 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|585111855|gb|EWM29329.1| (40s ribosomal protein s14 [Nannochloropsis gaditana]) HSP 1 Score: 308.145 bits (788), Expect = 4.443e-106 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL 152
MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL
Sbjct: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL 152
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|635362200|emb|CCI48990.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 241.891 bits (616), Expect = 6.666e-80 Identity = 118/141 (83.69%), Postives = 129/141 (91.49%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
MSKRG +VE+ T +GP EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKE+GITA+HIK+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTDST
Sbjct: 1 MSKRGQKKEVEEVT--RVGPTLKEGEEVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKEVGITALHIKVRATGGNRTKTPGPGAQSALRALARNGMKIGRIEDVTPIPTDST 139
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|325184044|emb|CCA18503.1| (40S ribosomal protein S14 putative [Albugo laibachii Nc14]) HSP 1 Score: 239.965 bits (611), Expect = 3.939e-79 Identity = 117/141 (82.98%), Postives = 128/141 (90.78%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
MSKRG +VE+ T +GP EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKE+GITA+H K+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTDST
Sbjct: 1 MSKRGQKKEVEEVT--RVGPTLKEGEEVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKEVGITALHTKIRATGGNRTKTPGPGAQSALRALARNGMKIGRIEDVTPIPTDST 139
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|635362201|emb|CCI48991.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 239.58 bits (610), Expect = 5.677e-79 Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 0
Query: 2 SKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
SKRG +VE+ T +GP EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKE+GITA+HIK+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTDST
Sbjct: 8 SKRGQKKEVEEVT--RVGPTLKEGEEVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKEVGITALHIKVRATGGNRTKTPGPGAQSALRALARNGMKIGRIEDVTPIPTDST 145
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|1150746350|ref|XP_020247312.1| (40S ribosomal protein S14-3-like [Asparagus officinalis] >gi|1141975907|gb|ONK57133.1| uncharacterized protein A4U43_C10F16950 [Asparagus officinalis]) HSP 1 Score: 239.195 bits (609), Expect = 6.243e-79 Identity = 117/141 (82.98%), Postives = 126/141 (89.36%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
MSKR + ED TL GP EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct: 1 MSKRKNREPKEDNVTL--GPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|1150699082|ref|XP_020260383.1| (40S ribosomal protein S14-3 [Asparagus officinalis] >gi|1141990079|gb|ONK71299.1| uncharacterized protein A4U43_C04F7040 [Asparagus officinalis]) HSP 1 Score: 239.195 bits (609), Expect = 6.966e-79 Identity = 117/141 (82.98%), Postives = 126/141 (89.36%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
MSKR + ED TL GP EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct: 1 MSKRKTREPKEDNVTL--GPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|298711478|emb|CBJ26566.1| (40S ribosomal protein S14 [Ectocarpus siliculosus]) HSP 1 Score: 239.195 bits (609), Expect = 7.444e-79 Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0
Query: 3 KRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
K+ KVE+ TL GPK AEGE+VFGVAHIFASFNDTFVH+TDLSGRET+ RVTGGMKVKADRDEASPYAAMLAAQDVAA+CKELGITA+HIKMRATGGNKTK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTD T
Sbjct: 4 KKTKEDKVEERVTL--GPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCT 140
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|731344994|ref|XP_010683691.1| (PREDICTED: 40S ribosomal protein S14-2 [Beta vulgaris subsp. vulgaris] >gi|870855007|gb|KMT06755.1| hypothetical protein BVRB_7g159150 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 238.424 bits (607), Expect = 1.375e-78 Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
MS+R + E+T TL GP EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct: 1 MSRRKTKEPKEETVTL--GPTVKEGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|590586702|ref|XP_007015778.1| (PREDICTED: 40S ribosomal protein S14 [Theobroma cacao] >gi|1204892832|ref|XP_021278187.1| 40S ribosomal protein S14-like [Herrania umbratica] >gi|508786141|gb|EOY33397.1| Ribosomal protein S11 family protein [Theobroma cacao]) HSP 1 Score: 238.424 bits (607), Expect = 1.603e-78 Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
MS+R ED LNLGP EGEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct: 1 MSRRKVREPKEDN--LNLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|514709743|ref|XP_004951862.1| (PREDICTED: 40S ribosomal protein S14-2 [Setaria italica] >gi|944264379|gb|KQL28619.1| hypothetical protein SETIT_018598mg [Setaria italica]) HSP 1 Score: 237.654 bits (605), Expect = 3.027e-78 Identity = 114/141 (80.85%), Postives = 127/141 (90.07%), Query Frame = 0
Query: 1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
MSKR + E+T TL GP EGEHVFGVAH+FASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLA+QDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDST
Sbjct: 1 MSKRKTREPKEETVTL--GPTVREGEHVFGVAHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139 The following BLAST results are available for this feature:
BLAST of EWM29329.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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