EWM29329.1, cds1354 (CDS) Nannochloropsis gaditana

Overview
NameEWM29329.1
Unique Namecds1354
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:429495..429497 -
Alignment locationCM002457.1:428761..429216 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29329.1
Product40s ribosomal protein s14
Orig transcript idgnl|cribi|Naga_100136g14.3180.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:429495..429497 -
CM002457.1supercontigCM002457.1:428761..429216 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018102Ribosomal_S11_CS
IPR001971Ribosomal_S11
Homology
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|585111855|gb|EWM29329.1| (40s ribosomal protein s14 [Nannochloropsis gaditana])

HSP 1 Score: 308.145 bits (788), Expect = 4.443e-106
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL 152
            MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL
Sbjct:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL 152          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|635362200|emb|CCI48990.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 241.891 bits (616), Expect = 6.666e-80
Identity = 118/141 (83.69%), Postives = 129/141 (91.49%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            MSKRG   +VE+ T   +GP   EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKE+GITA+HIK+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTDST
Sbjct:    1 MSKRGQKKEVEEVT--RVGPTLKEGEEVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKEVGITALHIKVRATGGNRTKTPGPGAQSALRALARNGMKIGRIEDVTPIPTDST 139          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|325184044|emb|CCA18503.1| (40S ribosomal protein S14 putative [Albugo laibachii Nc14])

HSP 1 Score: 239.965 bits (611), Expect = 3.939e-79
Identity = 117/141 (82.98%), Postives = 128/141 (90.78%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            MSKRG   +VE+ T   +GP   EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKE+GITA+H K+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTDST
Sbjct:    1 MSKRGQKKEVEEVT--RVGPTLKEGEEVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKEVGITALHTKIRATGGNRTKTPGPGAQSALRALARNGMKIGRIEDVTPIPTDST 139          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|635362201|emb|CCI48991.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 239.58 bits (610), Expect = 5.677e-79
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 0
Query:    2 SKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            SKRG   +VE+ T   +GP   EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKE+GITA+HIK+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTDST
Sbjct:    8 SKRGQKKEVEEVT--RVGPTLKEGEEVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKEVGITALHIKVRATGGNRTKTPGPGAQSALRALARNGMKIGRIEDVTPIPTDST 145          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|1150746350|ref|XP_020247312.1| (40S ribosomal protein S14-3-like [Asparagus officinalis] >gi|1141975907|gb|ONK57133.1| uncharacterized protein A4U43_C10F16950 [Asparagus officinalis])

HSP 1 Score: 239.195 bits (609), Expect = 6.243e-79
Identity = 117/141 (82.98%), Postives = 126/141 (89.36%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            MSKR +    ED  TL  GP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct:    1 MSKRKNREPKEDNVTL--GPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|1150699082|ref|XP_020260383.1| (40S ribosomal protein S14-3 [Asparagus officinalis] >gi|1141990079|gb|ONK71299.1| uncharacterized protein A4U43_C04F7040 [Asparagus officinalis])

HSP 1 Score: 239.195 bits (609), Expect = 6.966e-79
Identity = 117/141 (82.98%), Postives = 126/141 (89.36%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            MSKR +    ED  TL  GP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTREPKEDNVTL--GPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|298711478|emb|CBJ26566.1| (40S ribosomal protein S14 [Ectocarpus siliculosus])

HSP 1 Score: 239.195 bits (609), Expect = 7.444e-79
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0
Query:    3 KRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            K+    KVE+  TL  GPK AEGE+VFGVAHIFASFNDTFVH+TDLSGRET+ RVTGGMKVKADRDEASPYAAMLAAQDVAA+CKELGITA+HIKMRATGGNKTK+PGPGAQ ALRALAR+G+KIGRIEDVTPIPTD T
Sbjct:    4 KKTKEDKVEERVTL--GPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCT 140          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|731344994|ref|XP_010683691.1| (PREDICTED: 40S ribosomal protein S14-2 [Beta vulgaris subsp. vulgaris] >gi|870855007|gb|KMT06755.1| hypothetical protein BVRB_7g159150 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 238.424 bits (607), Expect = 1.375e-78
Identity = 115/141 (81.56%), Postives = 127/141 (90.07%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            MS+R +    E+T TL  GP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct:    1 MSRRKTKEPKEETVTL--GPTVKEGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|590586702|ref|XP_007015778.1| (PREDICTED: 40S ribosomal protein S14 [Theobroma cacao] >gi|1204892832|ref|XP_021278187.1| 40S ribosomal protein S14-like [Herrania umbratica] >gi|508786141|gb|EOY33397.1| Ribosomal protein S11 family protein [Theobroma cacao])

HSP 1 Score: 238.424 bits (607), Expect = 1.603e-78
Identity = 115/141 (81.56%), Postives = 126/141 (89.36%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            MS+R      ED   LNLGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTPIPTDST
Sbjct:    1 MSRRKVREPKEDN--LNLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of EWM29329.1 vs. NCBI_GenBank
Match: gi|514709743|ref|XP_004951862.1| (PREDICTED: 40S ribosomal protein S14-2 [Setaria italica] >gi|944264379|gb|KQL28619.1| hypothetical protein SETIT_018598mg [Setaria italica])

HSP 1 Score: 237.654 bits (605), Expect = 3.027e-78
Identity = 114/141 (80.85%), Postives = 127/141 (90.07%), Query Frame = 0
Query:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDST 141
            MSKR +    E+T TL  GP   EGEHVFGVAH+FASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLA+QDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDST
Sbjct:    1 MSKRKTREPKEETVTL--GPTVREGEHVFGVAHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139          
The following BLAST results are available for this feature:
BLAST of EWM29329.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111855|gb|EWM29329.1|4.443e-106100.0040s ribosomal protein s14 [Nannochloropsis gaditan... [more]
gi|635362200|emb|CCI48990.1|6.666e-8083.69unnamed protein product [Albugo candida][more]
gi|325184044|emb|CCA18503.1|3.939e-7982.9840S ribosomal protein S14 putative [Albugo laibach... [more]
gi|635362201|emb|CCI48991.1|5.677e-7983.57unnamed protein product [Albugo candida][more]
gi|1150746350|ref|XP_020247312.1|6.243e-7982.9840S ribosomal protein S14-3-like [Asparagus offici... [more]
gi|1150699082|ref|XP_020260383.1|6.966e-7982.9840S ribosomal protein S14-3 [Asparagus officinalis... [more]
gi|298711478|emb|CBJ26566.1|7.444e-7984.1740S ribosomal protein S14 [Ectocarpus siliculosus][more]
gi|731344994|ref|XP_010683691.1|1.375e-7881.56PREDICTED: 40S ribosomal protein S14-2 [Beta vulga... [more]
gi|590586702|ref|XP_007015778.1|1.603e-7881.56PREDICTED: 40S ribosomal protein S14 [Theobroma ca... [more]
gi|514709743|ref|XP_004951862.1|3.027e-7880.85PREDICTED: 40S ribosomal protein S14-2 [Setaria it... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1356rna1356Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications