rna1355, rna1355 (mRNA) Nannochloropsis gaditana

Overview
Namerna1355
Unique Namerna1355
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length402
Alignment locationCM002457.1:427533..428465 +

Link to JBrowse

Properties
Property NameValue
ProductTRM112-like protein
Orig transcript idgnl|cribi|Naga_100136g13.3171.mrna
Orig protein idgnl|cribi|Naga_100136g13.3171
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:427533..428465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100136g13gene1309Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1355rna1355-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29320.1cds1353Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1355 ID=rna1355|Name=rna1355|organism=Nannochloropsis gaditana|type=mRNA|length=402bp
ATGGTGGGCGTTGGAGCTGTGACTCGGAAAGGCGGGTCTCCTGTCGTCAA
GTCATCTGTCATGGCAAAGAGCAAGAATCACACGAACCGAAATCAGTCTT
TTAAAGCGCATCGAAACGGTATCAAGAAGCCCAAGAATTACGTTTCAAAA
TCTTTGAAAGGGATGGACCCGAAGTATTTGCGCAACCAGCGCTTCGCCAA
GAAACACAACAAGGTCGTCAAGACGGCCGGGGCGTATCAGGAGCGCTTTA
CATTTTCAATTCACGGAGCTCGTACAGCCAAATTGGCCGTGGCGTGCCAA
GATTTCGTTGTGCGCGGGAATGATATAGGTGGTAGACACGGACTCACGTC
GGTAGAGGCATATCGAATAAAGAAGCAAAACCTGAGCGCGCTCGGCCTCT
GA
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protein sequence of rna1355

>rna1355-protein ID=rna1355-protein|Name=rna1355|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MKNPISQGKVVLMLLVGCLEIFSLIPPCSRPPRIPLNSTKKYHQHAPTTV
VMRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVD
WPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVC
PETGRRFPINNGIPNMLLHEDEVA
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mRNA from alignment at CM002457.1:427533..428465+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1355 ID=rna1355|Name=rna1355|organism=Nannochloropsis gaditana|type=mRNA|length=933bp|location=Sequence derived from alignment at CM002457.1:427533..428465+ (Nannochloropsis gaditana)
CACCACACTACCATCTTGTAGCAAATATGCTCGCCCATGCTTGCTTGCAG
ATTTCTATAGCTTCCTTGTATACTGGCCATGAAAAATCCAATTTCTCAAG
GGAAGGTTGTTTTGATGCTTCTTGTCGGCTGTCTAGAGATATTCTCGCTT
ATTCCGCCCTGCTCTCGACCTCCCCGAATACCTTTAAATTCAACAAAAAA
ATATCACCAACACGCACCCACAACTGTAGTCATGCGGCTGATTACACATA
ATATGCTGAAGAGTAACGTAAAAGGGGTGATCAATGGCTTCCCCCTGAGA
ATAGAGGCTGAGAAGGTGGAAGTGAAGGAGACAGAGTTCAATTCAGGTAC
GTCCAAGGCGGCTTCACTTGTCGATGAAAGACACAGGGTTGGACCCTGGC
TAAAGTTGGAGATAAATGTTGGTTTAATGTATGTATGCACGGTGATCATG
GGCATTTGTCCTAAAAAAAATCACACCGTCCCCTAGAATTCGTGCAGAAC
TTACTGCCCAAGGTTGATTGGCCGGCTTTACGAGGGGCAAGCAAAGAGTT
GGGCATGGACGAGCTCCCAGAAGAGGTTAGACATTGATCTTATACATGAG
CGATTGAatgtgttttttttccttcgtgGATGACATACTCAACATCAACT
CATTTACAGATGGATGAGGCAAACAAAACGGACGACTCGTTTCTTCAGCT
TGTACACAAGCTGCTGCTGGATGTGCATGTGTTAGAGGGATCTTTAGTGT
GCCCTGAGACTGGTCGACGATTTCCAATAAACAATGGAATCCCTAACATG
CTCCTCCATGAGGACGAGGTCGCATGAATTGCataaggaaaagagaagat
gTAACGGTGTGTGTGGGGCGGAAATATCAAACCCTTTTTTTACACGTACA
AATGCAATATCGTTGCAAGTATGATATTTTTCG
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Coding sequence (CDS) from alignment at CM002457.1:427533..428465+

>rna1355 ID=rna1355|Name=rna1355|organism=Nannochloropsis gaditana|type=CDS|length=1575bp|location=Sequence derived from alignment at CM002457.1:427533..428465+ (Nannochloropsis gaditana)
ATGAAAAATCCAATTTCTCAAGGGAAGGTTGTTTTGATGCTTCTTGTCGG
CTGTCTAGAGATATTCTCGCTTATTCCGCCCTGCTCTCGACCTCCCCGAA
TACCTTTAAATTCAACAAAAAAATATCACCAACACGCACCCACAACTGTA
GTCATGCGGCTGATTACACATAATATGCTGAAGAGTAACGTAAAAGGGGT
GATCAATGGCTTCCCCCTGAGAATAGAGGCTGAGAAGGTGGAAGTGAAGG
AGACAGAGTTCAATTCAGAATTCGTGCAGAACTTACTGCCCAAGGTTGAT
TGGCCGGCTTTACGAGGGGCAAGCAAAGAGTTGGGCATGGACGAGCTCCC
AGAAGAGATGGATGAGGCAAACAAAACGGACGACTCGTTTCTTCAGCTTG
TACACAAGCTGCTGCTGGATGTGCATGTGTTAGAGGGATCTTTAGTGTGC
CCTGAGACTGGTCGACGATTTCCAATAAACAATGGAATCCCTAACATGCT
CCTCCATGAGGACGAGGTCGCATGAATGAAAAATCCAATTTCTCAAGGGA
AGGTTGTTTTGATGCTTCTTGTCGGCTGTCTAGAGATATTCTCGCTTATT
CCGCCCTGCTCTCGACCTCCCCGAATACCTTTAAATTCAACAAAAAAATA
TCACCAACACGCACCCACAACTGTAGTCATGCGGCTGATTACACATAATA
TGCTGAAGAGTAACGTAAAAGGGGTGATCAATGGCTTCCCCCTGAGAATA
GAGGCTGAGAAGGTGGAAGTGAAGGAGACAGAGTTCAATTCAGAATTCGT
GCAGAACTTACTGCCCAAGGTTGATTGGCCGGCTTTACGAGGGGCAAGCA
AAGAGTTGGGCATGGACGAGCTCCCAGAAGAGATGGATGAGGCAAACAAA
ACGGACGACTCGTTTCTTCAGCTTGTACACAAGCTGCTGCTGGATGTGCA
TGTGTTAGAGGGATCTTTAGTGTGCCCTGAGACTGGTCGACGATTTCCAA
TAAACAATGGAATCCCTAACATGCTCCTCCATGAGGACGAGGTCGCATGA
ATGAAAAATCCAATTTCTCAAGGGAAGGTTGTTTTGATGCTTCTTGTCGG
CTGTCTAGAGATATTCTCGCTTATTCCGCCCTGCTCTCGACCTCCCCGAA
TACCTTTAAATTCAACAAAAAAATATCACCAACACGCACCCACAACTGTA
GTCATGCGGCTGATTACACATAATATGCTGAAGAGTAACGTAAAAGGGGT
GATCAATGGCTTCCCCCTGAGAATAGAGGCTGAGAAGGTGGAAGTGAAGG
AGACAGAGTTCAATTCAGAATTCGTGCAGAACTTACTGCCCAAGGTTGAT
TGGCCGGCTTTACGAGGGGCAAGCAAAGAGTTGGGCATGGACGAGCTCCC
AGAAGAGATGGATGAGGCAAACAAAACGGACGACTCGTTTCTTCAGCTTG
TACACAAGCTGCTGCTGGATGTGCATGTGTTAGAGGGATCTTTAGTGTGC
CCTGAGACTGGTCGACGATTTCCAATAAACAATGGAATCCCTAACATGCT
CCTCCATGAGGACGAGGTCGCATGA
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Synonyms
Publications