EWM29320.1, cds1353 (CDS) Nannochloropsis gaditana

Overview
NameEWM29320.1
Unique Namecds1353
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:427611..427878 +
Alignment locationCM002457.1:428019..428107 +
Alignment locationCM002457.1:428192..428359 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29320.1
ProductTRM112-like protein
Orig transcript idgnl|cribi|Naga_100136g13.3171.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:427611..427878 +
CM002457.1supercontigCM002457.1:428019..428107 +
CM002457.1supercontigCM002457.1:428192..428359 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR005651UPF0434/Trm112
Homology
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|585111846|gb|EWM29320.1| (TRM112-like protein [Nannochloropsis gaditana])

HSP 1 Score: 354.755 bits (909), Expect = 6.433e-124
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MKNPISQGKVVLMLLVGCLEIFSLIPPCSRPPRIPLNSTKKYHQHAPTTVVMRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEVA 174
            MKNPISQGKVVLMLLVGCLEIFSLIPPCSRPPRIPLNSTKKYHQHAPTTVVMRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEVA
Sbjct:    1 MKNPISQGKVVLMLLVGCLEIFSLIPPCSRPPRIPLNSTKKYHQHAPTTVVMRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEVA 174          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|1150692982|ref|XP_020257429.1| (multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Asparagus officinalis] >gi|1141994336|gb|ONK75555.1| uncharacterized protein A4U43_C03F18120 [Asparagus officinalis])

HSP 1 Score: 168.318 bits (425), Expect = 7.539e-51
Identity = 76/122 (62.30%), Postives = 96/122 (78.69%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML SN+KGV +G+PLRIEA +   KE +FN++F++N+ PK+DWPAL  A+K LG  +LPEE + +    D FL+  H  LL+VHV EG+LVCPETGRRFP+N GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLASNIKGVTSGYPLRIEAHQSAAKEADFNADFLRNVFPKIDWPALVSAAKTLGYGDLPEEAEPSMLESDEFLRRFHHALLEVHVEEGALVCPETGRRFPVNKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|951020785|ref|XP_014512492.1| (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Vigna radiata var. radiata])

HSP 1 Score: 165.236 bits (417), Expect = 1.098e-49
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML SN+KGV+NGFPLRIEAEKV  K  E NSEF++ +  KVDW A   AS+ +G  ELPEE+D +    D FL   H  LL++H+ EG+LVCPETGRRFP+N GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVVNGFPLRIEAEKVVEKTVEMNSEFLKKMFEKVDWKAFVDASRAMGYTELPEEVDSSILDSDEFLNRFHHALLELHLEEGALVCPETGRRFPVNKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|743773080|ref|XP_010916870.1| (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Elaeis guineensis])

HSP 1 Score: 164.851 bits (416), Expect = 1.898e-49
Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML  N+KGV NGFPLR+EAEK   KE E N++F++ + PK++W AL GA++ +G D+LP+E D +    D FL+  H  LL++HV EG+LVCPETGRRFPIN GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSCNIKGVSNGFPLRLEAEKWVEKEVELNADFLRGIFPKIEWKALAGAARAIGYDQLPDEADASMLDSDDFLRRFHHALLELHVEEGALVCPETGRRFPINKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|1044555045|ref|XP_017413643.1| (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Vigna angularis] >gi|920692585|gb|KOM35810.1| hypothetical protein LR48_Vigan02g196000 [Vigna angularis] >gi|965607895|dbj|BAT94386.1| hypothetical protein VIGAN_08098500 [Vigna angularis var. angularis])

HSP 1 Score: 164.466 bits (415), Expect = 2.049e-49
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML SN+KGV+NGFPLRIEAEKV  K  E N EF++ +  KVDW AL  AS+ +G  ELPEE+D +    D FL   H  LL++H+ EG+LVCPETGRRFP+N GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVVNGFPLRIEAEKVVEKTVEMNGEFLKKMFEKVDWKALVDASRAMGYTELPEEVDSSILDSDEFLNRFHHALLELHLEEGALVCPETGRRFPVNKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|593685906|ref|XP_007143624.1| (hypothetical protein PHAVU_007G087400g [Phaseolus vulgaris] >gi|543177129|gb|AGV54586.1| hypothetical protein [Phaseolus vulgaris] >gi|561016814|gb|ESW15618.1| hypothetical protein PHAVU_007G087400g [Phaseolus vulgaris])

HSP 1 Score: 163.696 bits (413), Expect = 5.021e-49
Identity = 77/122 (63.11%), Postives = 91/122 (74.59%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML SN+KGV+NGFPLRIEAEKV  K  E N EF++ +  KVDW A   ASK +G  ELPEE D +    D FL   H  LL++H+ EG+LVCPETGRRFP++ GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVVNGFPLRIEAEKVAEKTVEMNGEFLKKMFEKVDWKAFVDASKAMGYTELPEEADSSMLDSDEFLNRFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|1150091935|ref|XP_020231659.1| (multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Cajanus cajan] >gi|1012339813|gb|KYP51039.1| TRM112-like protein At1g78190 family [Cajanus cajan])

HSP 1 Score: 162.925 bits (411), Expect = 9.889e-49
Identity = 76/122 (62.30%), Postives = 91/122 (74.59%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML SN+KGV+NGFPLRIEAEKV  K  E N EF++ +  K+DW A   AS+ +G  ELPEE D +    D FL   H  LL++H+ EG+LVCPETGRRFP+N GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVVNGFPLRIEAEKVVEKTVEMNGEFLKKMFEKIDWKAFVDASRAMGYTELPEEADSSMLDSDEFLNRFHHALLELHLEEGALVCPETGRRFPVNKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|596187860|ref|XP_007223437.1| (multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Prunus persica] >gi|1139802500|gb|ONI35118.1| hypothetical protein PRUPE_1G517100 [Prunus persica])

HSP 1 Score: 162.155 bits (409), Expect = 1.948e-48
Identity = 74/122 (60.66%), Postives = 98/122 (80.33%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML SN+KGV NGFPLRIE EKV  K+ +FN++F++N+ PK++W AL GA++ LG  ELPEE++ +    + FL+  H  LL++H+ EG+LVCPETGRRFP++ GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSSNIKGVTNGFPLRIEIEKVVEKQVDFNADFLRNMFPKIEWKALVGAARTLGYVELPEEVEPSRLDSEDFLRKFHHALLELHLEEGALVCPETGRRFPVSKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|1201314501|gb|OVA14209.1| (Uncharacterized protein family UPF0434/Trm112 [Macleaya cordata])

HSP 1 Score: 161.77 bits (408), Expect = 3.185e-48
Identity = 73/122 (59.84%), Postives = 94/122 (77.05%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRL+THNML  N+KGV NGFPLR+E EK   KE EFNS+F++N+  K++W AL  A++ +G +ELPEE D +    D FL+  H  LL++H+ EG+L+CPETGRRFP+N GIPNMLLHEDEV
Sbjct:    1 MRLLTHNMLSCNIKGVTNGFPLRLEVEKFVEKEVEFNSDFLKNMFVKIEWKALVNAARSMGYEELPEEADSSMLDSDEFLKKFHHALLELHLEEGALICPETGRRFPVNKGIPNMLLHEDEV 122          
BLAST of EWM29320.1 vs. NCBI_GenBank
Match: gi|351727645|ref|NP_001236144.1| (uncharacterized protein LOC100500562 [Glycine max] >gi|571562428|ref|XP_006605309.1| PREDICTED: uncharacterized protein LOC100500562 isoform X1 [Glycine max] >gi|571562432|ref|XP_006605310.1| PREDICTED: uncharacterized protein LOC100500562 isoform X1 [Glycine max] >gi|255630635|gb|ACU15677.1| unknown [Glycine max] >gi|734312603|gb|KHN00781.1| TRM112-like protein [Glycine soja] >gi|947042049|gb|KRG91773.1| hypothetical protein GLYMA_20G173300 [Glycine max])

HSP 1 Score: 160.999 bits (406), Expect = 5.383e-48
Identity = 76/122 (62.30%), Postives = 90/122 (73.77%), Query Frame = 0
Query:   52 MRLITHNMLKSNVKGVINGFPLRIEAEKVEVKETEFNSEFVQNLLPKVDWPALRGASKELGMDELPEEMDEANKTDDSFLQLVHKLLLDVHVLEGSLVCPETGRRFPINNGIPNMLLHEDEV 173
            MRLITHNML SN+KGV+NGFPLRIEAEKV  K  E N EF++ +  K+DW A   AS+ +G  ELPEE D +    D FL   H  LL++H+ EG LVCPETGRRFP++ GIPNMLLHEDEV
Sbjct:    1 MRLITHNMLSSNIKGVVNGFPLRIEAEKVVEKTVEMNGEFLKKMFEKIDWKAFVDASRAMGYTELPEEADSSMLDSDEFLNRFHHALLELHLEEGVLVCPETGRRFPVSKGIPNMLLHEDEV 122          
The following BLAST results are available for this feature:
BLAST of EWM29320.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111846|gb|EWM29320.1|6.433e-124100.00TRM112-like protein [Nannochloropsis gaditana][more]
gi|1150692982|ref|XP_020257429.1|7.539e-5162.30multifunctional methyltransferase subunit TRM112-l... [more]
gi|951020785|ref|XP_014512492.1|1.098e-4963.93PREDICTED: multifunctional methyltransferase subun... [more]
gi|743773080|ref|XP_010916870.1|1.898e-4961.48PREDICTED: multifunctional methyltransferase subun... [more]
gi|1044555045|ref|XP_017413643.1|2.049e-4963.93PREDICTED: multifunctional methyltransferase subun... [more]
gi|593685906|ref|XP_007143624.1|5.021e-4963.11hypothetical protein PHAVU_007G087400g [Phaseolus ... [more]
gi|1150091935|ref|XP_020231659.1|9.889e-4962.30multifunctional methyltransferase subunit TRM112-l... [more]
gi|596187860|ref|XP_007223437.1|1.948e-4860.66multifunctional methyltransferase subunit TRM112-l... [more]
gi|1201314501|gb|OVA14209.1|3.185e-4859.84Uncharacterized protein family UPF0434/Trm112 [Mac... [more]
gi|351727645|ref|NP_001236144.1|5.383e-4862.30uncharacterized protein LOC100500562 [Glycine max]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1355rna1355Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications