rna1354, rna1354 (mRNA) Nannochloropsis gaditana

Overview
Namerna1354
Unique Namerna1354
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1396
Alignment locationCM002457.1:426365..427275 -

Link to JBrowse

Properties
Property NameValue
Productribosomal protein l29
Orig transcript idgnl|cribi|Naga_100136g12.3168.mrna
Orig protein idgnl|cribi|Naga_100136g12.3168
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:426365..427275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100136g12gene1308Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1354rna1354-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29317.1cds1352Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1354 ID=rna1354|Name=rna1354|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp
TGTCGTTGCTAGTTTGATAAGGCATATTCGATGTCTACGGCGTGGCATTG
GGCATGTAACAATCGTGTATGGCTCGAATCTGAGCCCCACGGGAGCAATA
TTCGCCTTGCCTCCCTGGGCCCTCCATCCACATGCTGCCTTGGCGTCTGT
GATTTAGTTACGAGGAGACACCACATTCCGAGAAATTTCATGTATAAGAT
GTTGACAAGATACGCGTAATGTGCAATGGATCGTATCATACTCGGATGCG
TATTCGACTGACCTGGGAGCCGCGAAGTTTCAGGATTATCATCACTTGTT
TACTTATGGGCCTCAGCTGTCCCTCCGGTTGCCCCCCTCCCCCCTTCAAG
CCAAAAAACACAACAGCGTATATCATCCATCAAATGGCAAGAATTCTTAG
CACGAATCGTCGCCTGGTCTTTGTCTTCGGCGTTCTGGTCTTTTTAATGT
GCTTCGTCGCCAGTGGTATGGGCGAGAGTGCCCGGAGCGCCAGGAAGGTG
GCGGCTGCTTCGGAATTTGACGAAGAGGAGACCGAGGCCTTGAAGGATTG
GGAGGAGGATGGTGAATGGGACGAGGAAGAGGATGAGGATCAAGACTTGG
AGGACGGCTTTGAGGATGAGGAGGAGGATGAATTCGAAGACGAGGAAGAC
GGGTTCGAGGAGGAGGACGAAAGGGAAATGACGGACTATGAAGCTGAAGA
GGAAGATGACATCGACGATGAGGGCCCGGAGTGGGACGAGGCTTTGGACC
AGATCGAAGACGGAGACGGCCCCTCTCTGGACCTCGGGGACTTGGAGGGC
CTGATCGACAAGGAAGACCTCATGCGCAAGCTGGAGGAGATGGGACTTGA
CTTGGATGATGTCCATATCAGCGTCGATATGGGCGAAGATGCGATGGAAG
AGGACGAGGAGGAAGAGCTGGAAGAGGAGGACGAAGATGAAGAGGATGAG
GAGGATGAAGAGGAATACGAAAACTTTTAGAACATACGTGCAGGGATAGC
GAAACGCGAAATTGCAAGAAAGTTCGGGACGTGGAGAGAAGAGTTGATAT
GCTTATAAGGAAGCTAATAGGGAAGAATCAAAAGAGGAAAAAGCTGCCTT
AAGAATTGGAGCCTCTGGTCATAAAAAGAAACGGATCCATGAGAAGGCAT
CCAGGCCTAGTCGCGAAAGTGTTACACTACGGGAGTCGTGAGCAAAAAAT
GGATCGAATTAGCTCACAAACATGAACAATATAAAGAAGGAAGAATAGAA
AAAAGGGAGCTTACAACAAGAATCTGGCTCGCAATGTCTTTTTCGTCACT
CAAAGCCTCTTGGCCCCTTATCGCGCAGCTCCAGCAAATGGTGAATTTTC
TCGAACGGTGCCTTGGTGGCTGCCGATGACATTCAAAAGAAACATC
back to top

protein sequence of rna1354

>rna1354-protein ID=rna1354-protein|Name=rna1354|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MVGVGAVTRKGGSPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSK
SLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQ
DFVVRGNDIGGRHGLTSVEAYRIKKQNLSALGL
back to top

mRNA from alignment at CM002457.1:426365..427275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1354 ID=rna1354|Name=rna1354|organism=Nannochloropsis gaditana|type=mRNA|length=911bp|location=Sequence derived from alignment at CM002457.1:426365..427275- (Nannochloropsis gaditana)
ATGGTGGGCGTTGGAGCTGTGACTCGGTGCGATGCTTCTTTGCCATGAAG
CAAATGTACTCTTCGAAGCCTAATGACCCCTCTTCCATATCTGTATCTGC
TTTGCGTTTCACAGGAAAGGCGGGTCTCCTGTCGTCAAGTCATCTGTCAT
GGCAAAGGTAGGAACTTCGGGTATCGCGTGGTGGAGGGGGGCTTTGGATA
AAGGCCTTGAGGGAGGGCAGCCGTGAGGATAGGTTGTGGAGCTGCATGGG
TCATACGAGACTGTTTTATGAAATATGCTCAGCTATCTTATCATGGAATC
CGCTCGTTGGGGCATCATGTTGATAGTGGAAGGAAAGCAGCATTTCTCCT
CACACAAATCCGCATCTCTTCTCCCTCTGCAGAGCAAGAATCACACGAAC
CGAAATCAGTCTTTTAAAGCGCATCGAAACGGTATCAAGAAGCCCAAGAA
TTACGTTTCAAAATCTTTGAAAGGGGTAGGTTTGTCACTTCTTCTCCCTG
TGTTTTCAAAAGTTTAAATGCTAGATCTCAAGACTTGCCTATATACTGCG
CGTTTTCTGGGTGCGGAGCGCTCGATTCTCGACCACACCAACGCGCTTCA
TATTATTCGTTAACACAGATGGACCCGAAGTATTTGCGCAACCAGCGCTT
CGCCAAGAAACACAACAAGGTCGTCAAGACGGTGAAAGCCTGAATGGGGA
CGTGACGAGACGGCGTGGAGGGTCTGAAGGGAAGGCCGGGGCGTATCAGG
AGCGCTTTACATTTTCAATTCACGGAGCTCGTACAGCCAAATTGGCCGTG
GCGTGCCAAGATTTCGTTGTGCGCGGGAATGATATAGGTGGTAGACACGG
ACTCACGTCGGTAGAGGCATATCGAATAAAGAAGCAAAACCTGAGCGCGC
TCGGCCTCTGA
back to top

Coding sequence (CDS) from alignment at CM002457.1:426365..427275-

>rna1354 ID=rna1354|Name=rna1354|organism=Nannochloropsis gaditana|type=CDS|length=2010bp|location=Sequence derived from alignment at CM002457.1:426365..427275- (Nannochloropsis gaditana)
GCCGGGGCGTATCAGGAGCGCTTTACATTTTCAATTCACGGAGCTCGTAC
AGCCAAATTGGCCGTGGCGTGCCAAGATTTCGTTGTGCGCGGGAATGATA
TAGGTGGTAGACACGGACTCACGTCGGTAGAGGCATATCGAATAAAGAAG
CAAAACCTGAGCGCGCTCGGCCTCTGAATGGACCCGAAGTATTTGCGCAA
CCAGCGCTTCGCCAAGAAACACAACAAGGTCGTCAAGACGAGCAAGAATC
ACACGAACCGAAATCAGTCTTTTAAAGCGCATCGAAACGGTATCAAGAAG
CCCAAGAATTACGTTTCAAAATCTTTGAAAGGGGAAAGGCGGGTCTCCTG
TCGTCAAGTCATCTGTCATGGCAAAGATGGTGGGCGTTGGAGCTGTGACT
CGGCCGGGGCGTATCAGGAGCGCTTTACATTTTCAATTCACGGAGCTCGT
ACAGCCAAATTGGCCGTGGCGTGCCAAGATTTCGTTGTGCGCGGGAATGA
TATAGGTGGTAGACACGGACTCACGTCGGTAGAGGCATATCGAATAAAGA
AGCAAAACCTGAGCGCGCTCGGCCTCTGAATGGACCCGAAGTATTTGCGC
AACCAGCGCTTCGCCAAGAAACACAACAAGGTCGTCAAGACGAGCAAGAA
TCACACGAACCGAAATCAGTCTTTTAAAGCGCATCGAAACGGTATCAAGA
AGCCCAAGAATTACGTTTCAAAATCTTTGAAAGGGGAAAGGCGGGTCTCC
TGTCGTCAAGTCATCTGTCATGGCAAAGATGGTGGGCGTTGGAGCTGTGA
CTCGGCCGGGGCGTATCAGGAGCGCTTTACATTTTCAATTCACGGAGCTC
GTACAGCCAAATTGGCCGTGGCGTGCCAAGATTTCGTTGTGCGCGGGAAT
GATATAGGTGGTAGACACGGACTCACGTCGGTAGAGGCATATCGAATAAA
GAAGCAAAACCTGAGCGCGCTCGGCCTCTGAATGGACCCGAAGTATTTGC
GCAACCAGCGCTTCGCCAAGAAACACAACAAGGTCGTCAAGACGAGCAAG
AATCACACGAACCGAAATCAGTCTTTTAAAGCGCATCGAAACGGTATCAA
GAAGCCCAAGAATTACGTTTCAAAATCTTTGAAAGGGGAAAGGCGGGTCT
CCTGTCGTCAAGTCATCTGTCATGGCAAAGATGGTGGGCGTTGGAGCTGT
GACTCGGCCGGGGCGTATCAGGAGCGCTTTACATTTTCAATTCACGGAGC
TCGTACAGCCAAATTGGCCGTGGCGTGCCAAGATTTCGTTGTGCGCGGGA
ATGATATAGGTGGTAGACACGGACTCACGTCGGTAGAGGCATATCGAATA
AAGAAGCAAAACCTGAGCGCGCTCGGCCTCTGAATGGACCCGAAGTATTT
GCGCAACCAGCGCTTCGCCAAGAAACACAACAAGGTCGTCAAGACGAGCA
AGAATCACACGAACCGAAATCAGTCTTTTAAAGCGCATCGAAACGGTATC
AAGAAGCCCAAGAATTACGTTTCAAAATCTTTGAAAGGGGAAAGGCGGGT
CTCCTGTCGTCAAGTCATCTGTCATGGCAAAGATGGTGGGCGTTGGAGCT
GTGACTCGGCCGGGGCGTATCAGGAGCGCTTTACATTTTCAATTCACGGA
GCTCGTACAGCCAAATTGGCCGTGGCGTGCCAAGATTTCGTTGTGCGCGG
GAATGATATAGGTGGTAGACACGGACTCACGTCGGTAGAGGCATATCGAA
TAAAGAAGCAAAACCTGAGCGCGCTCGGCCTCTGAATGGACCCGAAGTAT
TTGCGCAACCAGCGCTTCGCCAAGAAACACAACAAGGTCGTCAAGACGAG
CAAGAATCACACGAACCGAAATCAGTCTTTTAAAGCGCATCGAAACGGTA
TCAAGAAGCCCAAGAATTACGTTTCAAAATCTTTGAAAGGGGAAAGGCGG
GTCTCCTGTCGTCAAGTCATCTGTCATGGCAAAGATGGTGGGCGTTGGAG
CTGTGACTCG
back to top
Synonyms
Publications