EWM29317.1, cds1352 (CDS) Nannochloropsis gaditana

Overview
NameEWM29317.1
Unique Namecds1352
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:427250..427275 -
Alignment locationCM002457.1:427119..427161 -
Alignment locationCM002457.1:426801..426893 -
Alignment locationCM002457.1:426595..426657 -
Alignment locationCM002457.1:426365..426541 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29317.1
Productribosomal protein l29
Orig transcript idgnl|cribi|Naga_100136g12.3168.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:427250..427275 -
CM002457.1supercontigCM002457.1:427119..427161 -
CM002457.1supercontigCM002457.1:426801..426893 -
CM002457.1supercontigCM002457.1:426595..426657 -
CM002457.1supercontigCM002457.1:426365..426541 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR002673Ribosomal_L29e
Homology
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|585111843|gb|EWM29317.1| (ribosomal protein l29 [Nannochloropsis gaditana])

HSP 1 Score: 271.552 bits (693), Expect = 3.477e-92
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MVGVGAVTRKGGSPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQDFVVRGNDIGGRHGLTSVEAYRIKKQNLSALGL 133
            MVGVGAVTRKGGSPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQDFVVRGNDIGGRHGLTSVEAYRIKKQNLSALGL
Sbjct:    1 MVGVGAVTRKGGSPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQDFVVRGNDIGGRHGLTSVEAYRIKKQNLSALGL 133          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1150715505|ref|XP_020268382.1| (60S ribosomal protein L29-1-like [Asparagus officinalis])

HSP 1 Score: 87.4261 bits (215), Expect = 2.210e-20
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
            MAKSKNHT  NQS+KAH+NGIKKPK + + S KGMDPK+LRNQR+A+KHNK    AG+ QE
Sbjct:    1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRNASTKGMDPKFLRNQRYARKHNKKNAEAGSEQE 61          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1147567012|ref|XP_020087100.1| (60S ribosomal protein L29-1-like [Ananas comosus])

HSP 1 Score: 85.8853 bits (211), Expect = 9.121e-20
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
            MAKSKNHT  NQS+KAH+NGIKKPK +   S KGMDPK+LRNQR+A+KHNK    AG+  E
Sbjct:    1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYARKHNKTSGEAGSAAE 61          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1035945248|gb|OAY69975.1| (60S ribosomal protein L29-1 [Ananas comosus])

HSP 1 Score: 87.4261 bits (215), Expect = 1.393e-19
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQ 100
            MAKSKNHT  NQS+KAH+NGIKKPK +   S KGMDPK+LRNQR+A+KHNK    +G+  E F   + G++ + +A A  
Sbjct:    1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYARKHNKKAGESGSEGEDFKVLL-GSQISSIAEAIH 79          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1201317678|gb|OVA16807.1| (Ribosomal protein L29e [Macleaya cordata])

HSP 1 Score: 84.7297 bits (208), Expect = 2.865e-19
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQER 82
            MAKSKNHT  NQS+KAHRNGIKKP+ +   S KGMDPK+LRNQR+AKKHNK    +G  +E+
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNKKEVGSGTEEEQ 62          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|703091314|ref|XP_010094315.1| (60S ribosomal protein L29-1 [Morus notabilis] >gi|587866257|gb|EXB55735.1| 60S ribosomal protein L29-1 [Morus notabilis])

HSP 1 Score: 84.3445 bits (207), Expect = 2.950e-19
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
            MAKSKNHT  NQSFKAH+NGIKKP+ +   S KGMDPK+LRNQR+A+KHN     +G+ QE
Sbjct:    1 MAKSKNHTAHNQSFKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNQKNQSGSEQE 61          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1035941008|gb|OAY67217.1| (60S ribosomal protein L29-1 [Ananas comosus])

HSP 1 Score: 86.2705 bits (212), Expect = 3.519e-19
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0
Query:   13 SPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 71
            SP  +S  MAKSKNHT  NQS+KAH+NGIKKPK +   S KGMDPK+LRNQR+A+KHNK
Sbjct:   46 SPSSQSGEMAKSKNHTAHNQSYKAHKNGIKKPKGHRQTSTKGMDPKFLRNQRYARKHNK 104          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1012003290|ref|XP_015937248.1| (60S ribosomal protein L29-1 [Arachis duranensis] >gi|1012003294|ref|XP_015937256.1| 60S ribosomal protein L29-1 [Arachis duranensis] >gi|1021473044|ref|XP_016198015.1| 60S ribosomal protein L29-1 [Arachis ipaensis] >gi|1021473046|ref|XP_016198024.1| 60S ribosomal protein L29-1 [Arachis ipaensis] >gi|1129799387|gb|APT68166.1| 60S ribosomal protein L29-1 [Arachis hypogaea] >gi|1129799389|gb|APT68167.1| 60S ribosomal protein L29-1 [Arachis hypogaea])

HSP 1 Score: 83.9593 bits (206), Expect = 5.313e-19
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
            MAKSKNHT  NQS+KAH+NGIKKPK +   S KGMDPK+LRNQR+A+KHNK      A +E
Sbjct:    1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKKSDEGSAEEE 61          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|971565253|ref|XP_015167978.1| (PREDICTED: 60S ribosomal protein L29-2-like [Solanum tuberosum])

HSP 1 Score: 83.5741 bits (205), Expect = 5.841e-19
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 71
            MAKSKNHT  NQS+KAHRNGIKKPK++   S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKSHRHSSTKGMDPKFLRNQRYARKHNK 51          
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|460388442|ref|XP_004239876.1| (PREDICTED: 60S ribosomal protein L29-2-like [Solanum lycopersicum] >gi|970026724|ref|XP_015074678.1| PREDICTED: 60S ribosomal protein L29-2-like [Solanum pennellii])

HSP 1 Score: 83.5741 bits (205), Expect = 6.101e-19
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0
Query:   21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 71
            MAKSKNHT  NQS+KAHRNGIKKPK++   S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKSHRHSSTKGMDPKFLRNQRYARKHNK 51          
The following BLAST results are available for this feature:
BLAST of EWM29317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111843|gb|EWM29317.1|3.477e-92100.00ribosomal protein l29 [Nannochloropsis gaditana][more]
gi|1150715505|ref|XP_020268382.1|2.210e-2068.8560S ribosomal protein L29-1-like [Asparagus offici... [more]
gi|1147567012|ref|XP_020087100.1|9.121e-2067.2160S ribosomal protein L29-1-like [Ananas comosus][more]
gi|1035945248|gb|OAY69975.1|1.393e-1955.0060S ribosomal protein L29-1 [Ananas comosus][more]
gi|1201317678|gb|OVA16807.1|2.865e-1966.13Ribosomal protein L29e [Macleaya cordata][more]
gi|703091314|ref|XP_010094315.1|2.950e-1965.5760S ribosomal protein L29-1 [Morus notabilis] >gi|... [more]
gi|1035941008|gb|OAY67217.1|3.519e-1969.4960S ribosomal protein L29-1 [Ananas comosus][more]
gi|1012003290|ref|XP_015937248.1|5.313e-1965.5760S ribosomal protein L29-1 [Arachis duranensis] >... [more]
gi|971565253|ref|XP_015167978.1|5.841e-1976.47PREDICTED: 60S ribosomal protein L29-2-like [Solan... [more]
gi|460388442|ref|XP_004239876.1|6.101e-1976.47PREDICTED: 60S ribosomal protein L29-2-like [Solan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1354rna1354Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications