EWM29317.1, cds1352 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|585111843|gb|EWM29317.1| (ribosomal protein l29 [Nannochloropsis gaditana]) HSP 1 Score: 271.552 bits (693), Expect = 3.477e-92 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MVGVGAVTRKGGSPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQDFVVRGNDIGGRHGLTSVEAYRIKKQNLSALGL 133
MVGVGAVTRKGGSPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQDFVVRGNDIGGRHGLTSVEAYRIKKQNLSALGL
Sbjct: 1 MVGVGAVTRKGGSPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQDFVVRGNDIGGRHGLTSVEAYRIKKQNLSALGL 133
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1150715505|ref|XP_020268382.1| (60S ribosomal protein L29-1-like [Asparagus officinalis]) HSP 1 Score: 87.4261 bits (215), Expect = 2.210e-20 Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
MAKSKNHT NQS+KAH+NGIKKPK + + S KGMDPK+LRNQR+A+KHNK AG+ QE
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRNASTKGMDPKFLRNQRYARKHNKKNAEAGSEQE 61
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1147567012|ref|XP_020087100.1| (60S ribosomal protein L29-1-like [Ananas comosus]) HSP 1 Score: 85.8853 bits (211), Expect = 9.121e-20 Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
MAKSKNHT NQS+KAH+NGIKKPK + S KGMDPK+LRNQR+A+KHNK AG+ E
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYARKHNKTSGEAGSAAE 61
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1035945248|gb|OAY69975.1| (60S ribosomal protein L29-1 [Ananas comosus]) HSP 1 Score: 87.4261 bits (215), Expect = 1.393e-19 Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQERFTFSIHGARTAKLAVACQ 100
MAKSKNHT NQS+KAH+NGIKKPK + S KGMDPK+LRNQR+A+KHNK +G+ E F + G++ + +A A
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYARKHNKKAGESGSEGEDFKVLL-GSQISSIAEAIH 79
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1201317678|gb|OVA16807.1| (Ribosomal protein L29e [Macleaya cordata]) HSP 1 Score: 84.7297 bits (208), Expect = 2.865e-19 Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQER 82
MAKSKNHT NQS+KAHRNGIKKP+ + S KGMDPK+LRNQR+AKKHNK +G +E+
Sbjct: 1 MAKSKNHTAHNQSYKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNKKEVGSGTEEEQ 62
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|703091314|ref|XP_010094315.1| (60S ribosomal protein L29-1 [Morus notabilis] >gi|587866257|gb|EXB55735.1| 60S ribosomal protein L29-1 [Morus notabilis]) HSP 1 Score: 84.3445 bits (207), Expect = 2.950e-19 Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
MAKSKNHT NQSFKAH+NGIKKP+ + S KGMDPK+LRNQR+A+KHN +G+ QE
Sbjct: 1 MAKSKNHTAHNQSFKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNQKNQSGSEQE 61
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1035941008|gb|OAY67217.1| (60S ribosomal protein L29-1 [Ananas comosus]) HSP 1 Score: 86.2705 bits (212), Expect = 3.519e-19 Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 0
Query: 13 SPVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 71
SP +S MAKSKNHT NQS+KAH+NGIKKPK + S KGMDPK+LRNQR+A+KHNK
Sbjct: 46 SPSSQSGEMAKSKNHTAHNQSYKAHKNGIKKPKGHRQTSTKGMDPKFLRNQRYARKHNK 104
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|1012003290|ref|XP_015937248.1| (60S ribosomal protein L29-1 [Arachis duranensis] >gi|1012003294|ref|XP_015937256.1| 60S ribosomal protein L29-1 [Arachis duranensis] >gi|1021473044|ref|XP_016198015.1| 60S ribosomal protein L29-1 [Arachis ipaensis] >gi|1021473046|ref|XP_016198024.1| 60S ribosomal protein L29-1 [Arachis ipaensis] >gi|1129799387|gb|APT68166.1| 60S ribosomal protein L29-1 [Arachis hypogaea] >gi|1129799389|gb|APT68167.1| 60S ribosomal protein L29-1 [Arachis hypogaea]) HSP 1 Score: 83.9593 bits (206), Expect = 5.313e-19 Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGAYQE 81
MAKSKNHT NQS+KAH+NGIKKPK + S KGMDPK+LRNQR+A+KHNK A +E
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKKSDEGSAEEE 61
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|971565253|ref|XP_015167978.1| (PREDICTED: 60S ribosomal protein L29-2-like [Solanum tuberosum]) HSP 1 Score: 83.5741 bits (205), Expect = 5.841e-19 Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 71
MAKSKNHT NQS+KAHRNGIKKPK++ S KGMDPK+LRNQR+A+KHNK
Sbjct: 1 MAKSKNHTAHNQSYKAHRNGIKKPKSHRHSSTKGMDPKFLRNQRYARKHNK 51
BLAST of EWM29317.1 vs. NCBI_GenBank
Match: gi|460388442|ref|XP_004239876.1| (PREDICTED: 60S ribosomal protein L29-2-like [Solanum lycopersicum] >gi|970026724|ref|XP_015074678.1| PREDICTED: 60S ribosomal protein L29-2-like [Solanum pennellii]) HSP 1 Score: 83.5741 bits (205), Expect = 6.101e-19 Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0
Query: 21 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 71
MAKSKNHT NQS+KAHRNGIKKPK++ S KGMDPK+LRNQR+A+KHNK
Sbjct: 1 MAKSKNHTAHNQSYKAHRNGIKKPKSHRHSSTKGMDPKFLRNQRYARKHNK 51 The following BLAST results are available for this feature:
BLAST of EWM29317.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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