rna1350, rna1350 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1350
Unique Name	rna1350
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1405
Alignment location	CM002457.1:414582..418251 +

Link to JBrowse

Properties


Property Name	Value
Product	Winged helix-turn-helix transcription repressor
Orig transcript id	gnl\|cribi\|Naga_100136g7.3182.mrna
Orig protein id	gnl\|cribi\|Naga_100136g7.3182
Gene	HSF
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:414582..418251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
HSF	gene1304	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1350	rna1350-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29331.1	cds1348	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:414582..418251+
coding sequence from alignment at CM002457.1:414582..418251+

mRNA sequence

>rna1350 ID=rna1350|Name=rna1350|organism=Nannochloropsis gaditana|type=mRNA|length=1405bp
CTAAACCATCACGTCATCAGGAAGGGGACTAAAGTGGAGGGAGTTGCGGC
CTAAACCATCACATCATAAGGAAGGGGACTAAAGGGGAGGGAGTTGCGGC
CTAAACCATCACATCGACCAGCCAAGACAAGAGGAACTTCACGTACCTGC
GTGGGCCGCACAGCGTCGACACGAAAGCCACCAGAGCATTGCTTGCGTCC
TGGAATATTAAGAAGCTCAAAATTTTACTGTTTTTCAAACAGGTGTTCCT
TGACACTGGACATGGCGCCTCCAGGACGTTATCAAAAGACTTGTGATCGT
CGACGGATACCATCCCACAGGCTTCTCTTGTTCGTCCATTCTGTCGTCGT
AGTAGTTCTTTTGTCCAACAGATCAGCCGCGTTCCAACACGTAAATCCAC
CAATATCTATTTTTGAGAGGAGAAAGACAACTTTCCCGGACGGTAGCGGC
AGATTTCAAGCAATGTCGGACGACAAAACAGACTTCTTCAACACATCAAG
TTGTCTACACGACTCCAGCTCCGGCCCACGCGCCGCTTCCTTGCGGAGCT
CTCACCATAACTCATTTGCTAGAATAAAGGGATCACAAAGCACTCGCGGC
GATTTTTTGCGGCAGGGCTTATTGACAGCGGGTGGGGCTGCAATGGGTGC
CTTCTTTTCACCTGATCCCGACTTCCCCCGGCGACCTCGTCATGCTCATG
CAGCAGCCAATCGTGTGCAAGACATGGACCTTCCAGCGGTGGCTTTTGAA
ACCAAAAGCGGGCTGCGGTACTACGATGTTCGAAAAGGTGAAGGTATGAG
TCCGAAGTGGGGCCAAGTGGCGATTATTCAATATGAGGGCTACGTACGGG
CCTCGCCTTTTTCCAAGCTTGTGCTATTCGACGACACCTACGCCCGTAAA
ACGCCATACCTGGTCAAGCATGGCAATGGTAGGGTCATTCGTGGACTGGA
CGAAGGCATCCACTCCATGAAATTAGGCGGCCTTCGTCGAATCGTTGTGC
CTCTTGAGCTGGGTTATACAAAGACGGGCCTGGGCCCACTGCCGCCCAAC
GCTTTTCGCCGTAAAATCCTGGTGAGAGAGCTAGGAAAGGCAGAGGTGAA
CGATCCTCCAGGAGAAATAATTTACGACGTGGAGCTGGTGTCTCTGTATG
ACGATGAGGCCGACTTGGGGTACTACGATGATTTGACATTTGATCCAGGC
TACTTGCAGGAAGGGATGGCGAAAAGTTTGCAGGAATTGAGGGACAAAGG
GGTGAAAGTACCCTCCACTAAGAGCTTCATGACAAAACCCGAGATTTTGG
GAAGTCGGCGGCAGGAGATCGAGCTAAATGGGCTACCGGAAAATATGCAA
TAAGGCCAAAACCGGCACTCATTTGAATAAAAGTAATTTCATGCTTTTCT
ACTCC

protein sequence of rna1350

>rna1350-protein ID=rna1350-protein|Name=rna1350|organism=Nannochloropsis gaditana|type=polypeptide|length=359bp
MTTAITTIRTSSRMRSLRGSGAAIAKQKPPVPVPVPSSSADEGADYDDDD
GTSSLGGGSVVAANSGSTGATNNGIGGRDQPLFLRKTYQMLESCSPSIAA
WSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVR
VLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRAT
HGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGA
DPKKRKVSADRAAAAAVMVALEGQRRGRKASGRQTGGRREGEEEDDDEEE
EEEEESEGEGGRRGPGGCRGPGRSMEREASKRVFSRVRRGCQTCRPCPPR
KERAMGATW

mRNA from alignment at CM002457.1:414582..418251+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1350 ID=rna1350|Name=rna1350|organism=Nannochloropsis gaditana|type=mRNA|length=3670bp|location=Sequence derived from alignment at CM002457.1:414582..418251+ (Nannochloropsis gaditana)
agggcgtTTCGGGTGACTTCGGACTACCAACATCATAACGCACTGTGCTT
TATCTCAATTATACTTTTAAAGTTGGGGCATAAGCGTTATTGTCGTGTCA
GCCCCCTTGACCGCAACACGCGTCTCATGGGTCGCTCAGAGAAGAACAAA
ATCAAAATCTAGCCCACACGAAACAACTCCCCCATTGCGCCCTTTCGTCC
CACAAATGACCACAGCAATCACGACGATACGCACCAGTTCACGCATGAGA
AGCCTTCGAGGCTCAGGTGCGGCCATTGCCAAGCAAAAGCCGCCTGTGCC
GGTCCCCGTGCCTAGTTCATCCGCGGATGAAGGGGCGGATTacgatgacg
atgacggTACCAGCAGCttaggaggaggaagcgtggTGGCAGCCAACAGT
GGCAGTACGGGTGCTACCAACAATGGGATAGGAGGGCGTGATCAACCCCT
GTTCTTGCGGAAAACATACCAAATGCTGGAGTCTTGTTCCCCCTCAATCG
CTGCGTGGTCGGGCAAGGGTGACTCCTTTTTGATCAAAGATCCTGACAGC
TTCGCCCAGACGGTGATTCCGCAGTATTTTAGCCACAACAACTTCTCGTC
TTTTGTCCGCCAGCTCAACTTTTACGGCTTTCGCAAAGTAAAGCAAGACG
TGCGCGTGTTGCAGGTATGTCGGGCGTTGGGAATGTCCGGGAGGGTCGTC
atgcggaggagaaggatgagCAGGCCATGGCTTGTCTTTCTCTATGTAAG
GCTGCCCTCATGAATGGGTGTGTGTTTTGCACGCCatgcaaaggggagga
aggggcgatgATCGCGTAGATGCGTGGTGGGTTTGAGGCAACCGAGACGC
TTCGCGTCGTCTCGCTCTCATCTTCCCGCACCCTGATACCCTACGGCtct
ggcagggaggaagcaacgCGGCTGCCAGCAGCAATCCGGCGAAcgcgggt
ggcggaggcggcgccaGTGCCAAGTGGTGGGAGTTTCGGCACGACAAGTT
CATTCGGGGAAAGCCGCAGCTCTTGGCTCAGATCCGACGGGCCACGCATG
GGGCGAGCAACGAGCAGGAAGTCTCGCACCTGAAGACAGAGGTAGGGCAG
CTCAAGGACCGGATCCAGGAGATGAGCTCGGACATCGACCGTCTGACGTC
CCTGGTGCAAGGCCTGATGGTTGCCAAGATGGGCTCAGAGGGGGCCGAcc
ccaagaagaggaaggtgtcGGCGGACcgtgcggcggcggcggcggtgatg
GTGGCCCTGGAGGGGCAACGGAGGGGACGGAAGGCGTCGGGAAGACagac
aggagggcggcgggaaggggaggaggaagacgacgacgaggaggaggagg
aggaggaggagtccgagggggagggggggaggcgggggccgggaggatgC
AGGGGCCCCGGCAGGTcgatggagagagaggcatcCAAGAGGGTCTTCTC
AAGGGTACGAAGGGGCTGCCAGACCTGTCGGCCATGCCCTccacggaagg
agagggcaatggGAGCGACTTGGTAGGGGCGGGCCTGGGGCTCCTCGGAA
ACACCTGCAGCGCTGACTCTGTGCTAGCGTTCCAGGAACACAGCCATCTG
TTTTTGAgtggagatgaggaggaagacggggagaagcTCTCTGTGGCATT
TGATCCCTTCTTGGGCGTtgggttggggggggaggaggacggccgtCAGA
ACAGTGCGTCGGCGGCGGGACCcagtggggagggcggcgcgggcggggag
aaggacttCGCGCTGAGCATTCTGGAgctggatggggaggaagatggtcA
CGCGCAGGAGCGAGGGGCCTCCCATGGCCTGCTCAGCTCGGAGAGTCTTG
GGCGGGCGACGGGCGCGAGTGCGCGGGGGTCTTTGGCCTACCATGGGGCG
AATGCCGGTGTCCCAATGGAGACCTCGCCGCCGGGCTCCCCGCGGCCCAT
CCACCTAAGCGGCAGCGACGACAGTCTGGGCGGTGTGGCcatggacgggg
aggactgTAAAGAAGCGCGGGTGGGGCCGGCtcaagagggcgggaacgcG
GTCAGGGCCACTGGGACCGAGGTCGCGGCAGACGTGGGTTTTCTGCCCGA
GAGTCTGACGAAGTTATCACCGGAGCACAAGAAACGCCTGCTCGAGACCT
TGGTCACAGCCTTGGGCACCACGTCTGCCCCGtctgcccccgcctccgtg
gcAGGGACCGAGGCGACGGGCCCCGTGCCCGCCACTGCCTCATGTTCGCC
GGCGgtgcccccttcctcatccacccTGACGGGGGGCGTCCCGCCCTTGG
CGAGTGCGGCCTTTGGGGCCTTGCTGACTCAATACGCCAAGGAGTTGGTT
GAGAGTGACAAGCCACCGGGGTCCCCCGCACATTTGGTGggccatcacca
ccatcaccatACCCGGAAGGAGATCCGATCTCAGGGGTAGAGGCATGAGG
actggggagggcggagggggaaaggggaaagagtgCAAGTCTTCGACAGA
ATGAAAAGTCAGGAGCGACTCGGGAGAATGGCCTACCCTCGCCAGCGTAC
CATTTGGCACTGTTTTGTGGGCGAGCAGGAAAGACTGATGGGAAACAAAT
GCCTTTTCGATGGTACCTGCGTTGCAAACTGAGGGGATTTGTAGGTGTGC
CTGAGCTCTTGGTGAACGTAATGTTACCCAAAAAGTGAGGTTGTGGATGT
ACTGGAGGGAGATTTGGGCCaggagtggagggaatgTGGGAGTCTGGTGG
CTCGGGACACACCAAGGAAGCGTGATGAAGGTTGTGGACCCTGAGGCAAA
GGGGGTGGTGCGTTCACGAGTACCGAGGTGGGAGACATGGAGGAATGCAA
GGAGTaggagagggaaatgagggagtCCTTTCACGCGTAATTATAAAATC
ATATTCTACATTTTGGAAATCCACTTCGCGGCTCAAATAGAGATTCTGGG
AAGATTGGAGGATTCTCCGCCTGGTGGGCGGGGATGCGGCTTCAGACTCA
AGCGTGTGCGTATTTTTAGGTGTGGAAACAAGAGCAAAGCCGTGTGTCCA
TGGTGGAAGCGTGGACTGACGGATGTATGGTTACCAGATAGGCTGCAAGG
GGTAGCAATTTTAGTCGCCGCGAGTGCATTTCAAATAAGACTTTAAAATG
GCCCATGGAATGGTCTGATGACCATCAAGCAACGGGGCGGAGAACCGTGT
CTTAAGCCACTTCAAATCGGCAAACAGAAAGAGACGAGAAATTGTGGACC
CctctttttaaaaaaggatAACGATTCCGATGATGTTGGTTTGCGCCTCA
CAGAGAGTGGCCAAGATGGTGGCCAAGAGCGTGGCAATTCCTAATGGAGC
GAACGACAGTgaagcaaaaaagaaaagaggcaTGGGCTGATGAAAGGGTT
ATATTCACGTGCAATAAGGATGTTCGATTTTTTACAAGTGTATATGCAGA
GGTACCTATCGACCAGGACCTGTCGGATAATATCGCCTCTTGCCACCAAC
CGCCTCCCCATCAGATCACTGTACTGCTCAAAttcttgctgctgccactG
AGCCTTTCAACCCGCCTGTtgctcatctcctccagACCGTGTTTAATCCT
TGGTGCGTTGGTTGTGTCCGCACAAGCTAGGGAGTCTGGAAGAACgactc
gctccctctctgacCCTTCC

Coding sequence (CDS) from alignment at CM002457.1:414582..418251+

>rna1350 ID=rna1350|Name=rna1350|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at CM002457.1:414582..418251+ (Nannochloropsis gaditana)
ATGACCACAGCAATCACGACGATACGCACCAGTTCACGCATGAGAAGCCT
TCGAGGCTCAGGTGCGGCCATTGCCAAGCAAAAGCCGCCTGTGCCGGTCC
CCGTGCCTAGTTCATCCGCGGATGAAGGGGCGGATTacgatgacgatgac
ggTACCAGCAGCttaggaggaggaagcgtggTGGCAGCCAACAGTGGCAG
TACGGGTGCTACCAACAATGGGATAGGAGGGCGTGATCAACCCCTGTTCT
TGCGGAAAACATACCAAATGCTGGAGTCTTGTTCCCCCTCAATCGCTGCG
TGGTCGGGCAAGGGTGACTCCTTTTTGATCAAAGATCCTGACAGCTTCGC
CCAGACGGTGATTCCGCAGTATTTTAGCCACAACAACTTCTCGTCTTTTG
TCCGCCAGCTCAACTTTTACGGCTTTCGCAAAGTAAAGCAAGACGTGCGC
GTGTTGCAGggaggaagcaacgCGGCTGCCAGCAGCAATCCGGCGAAcgc
gggtggcggaggcggcgccaGTGCCAAGTGGTGGGAGTTTCGGCACGACA
AGTTCATTCGGGGAAAGCCGCAGCTCTTGGCTCAGATCCGACGGGCCACG
CATGGGGCGAGCAACGAGCAGGAAGTCTCGCACCTGAAGACAGAGGTAGG
GCAGCTCAAGGACCGGATCCAGGAGATGAGCTCGGACATCGACCGTCTGA
CGTCCCTGGTGCAAGGCCTGATGGTTGCCAAGATGGGCTCAGAGGGGGCC
GAccccaagaagaggaaggtgtcGGCGGACcgtgcggcggcggcggcggt
gatgGTGGCCCTGGAGGGGCAACGGAGGGGACGGAAGGCGTCGGGAAGAC
agacaggagggcggcgggaaggggaggaggaagacgacgacgaggaggag
gaggaggaggaggagtccgagggggagggggggaggcgggggccgggagg
atgCAGGGGCCCCGGCAGGTcgatggagagagaggcatcCAAGAGGGTCT
TCTCAAGGGTACGAAGGGGCTGCCAGACCTGTCGGCCATGCCCTccacgg
aaggagagggcaatggGAGCGACTTGGTAGATGACCACAGCAATCACGAC
GATACGCACCAGTTCACGCATGAGAAGCCTTCGAGGCTCAGGTGCGGCCA
TTGCCAAGCAAAAGCCGCCTGTGCCGGTCCCCGTGCCTAGTTCATCCGCG
GATGAAGGGGCGGATTacgatgacgatgacggTACCAGCAGCttaggagg
aggaagcgtggTGGCAGCCAACAGTGGCAGTACGGGTGCTACCAACAATG
GGATAGGAGGGCGTGATCAACCCCTGTTCTTGCGGAAAACATACCAAATG
CTGGAGTCTTGTTCCCCCTCAATCGCTGCGTGGTCGGGCAAGGGTGACTC
CTTTTTGATCAAAGATCCTGACAGCTTCGCCCAGACGGTGATTCCGCAGT
ATTTTAGCCACAACAACTTCTCGTCTTTTGTCCGCCAGCTCAACTTTTAC
GGCTTTCGCAAAGTAAAGCAAGACGTGCGCGTGTTGCAGggaggaagcaa
cgCGGCTGCCAGCAGCAATCCGGCGAAcgcgggtggcggaggcggcgcca
GTGCCAAGTGGTGGGAGTTTCGGCACGACAAGTTCATTCGGGGAAAGCCG
CAGCTCTTGGCTCAGATCCGACGGGCCACGCATGGGGCGAGCAACGAGCA
GGAAGTCTCGCACCTGAAGACAGAGGTAGGGCAGCTCAAGGACCGGATCC
AGGAGATGAGCTCGGACATCGACCGTCTGACGTCCCTGGTGCAAGGCCTG
ATGGTTGCCAAGATGGGCTCAGAGGGGGCCGAccccaagaagaggaaggt
gtcGGCGGACcgtgcggcggcggcggcggtgatgGTGGCCCTGGAGGGGC
AACGGAGGGGACGGAAGGCGTCGGGAAGACagacaggagggcggcgggaa
ggggaggaggaagacgacgacgaggaggaggaggaggaggaggagtccga
gggggagggggggaggcgggggccgggaggatgCAGGGGCCCCGGCAGGT
cgatggagagagaggcatcCAAGAGGGTCTTCTCAAGGGTACGAAGGGGC
TGCCAGACCTGTCGGCCATGCCCTccacggaaggagagggcaatggGAGC
GACTTGGTAG

Synonyms

Publications