EWM29331.1, cds1348 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|585111857|gb|EWM29331.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 733.021 bits (1891), Expect = 0.000e+0 Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0 Query: 1 MTTAITTIRTSSRMRSLRGSGAAIAKQKPPVPVPVPSSSADEGADYDDDDGTSSLGGGSVVAANSGSTGATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVSADRAAAAAVMVALEGQRRGRKASGRQTGGRREGEEEDDDEEEEEEEESEGEGGRRGPGGCRGPGRSMEREASKRVFSRVRRGCQTCRPCPPRKERAMGATW 359 MTTAITTIRTSSRMRSLRGSGAAIAKQKPPVPVPVPSSSADEGADYDDDDGTSSLGGGSVVAANSGSTGATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVSADRAAAAAVMVALEGQRRGRKASGRQTGGRREGEEEDDDEEEEEEEESEGEGGRRGPGGCRGPGRSMEREASKRVFSRVRRGCQTCRPCPPRKERAMGATW Sbjct: 1 MTTAITTIRTSSRMRSLRGSGAAIAKQKPPVPVPVPSSSADEGADYDDDDGTSSLGGGSVVAANSGSTGATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVSADRAAAAAVMVALEGQRRGRKASGRQTGGRREGEEEDDDEEEEEEEESEGEGGRRGPGGCRGPGRSMEREASKRVFSRVRRGCQTCRPCPPRKERAMGATW 359
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|298710443|emb|CBJ25507.1| (Heat Shock transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 181.03 bits (458), Expect = 4.910e-49 Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = 0 Query: 78 RDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATH-GASNE-QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM 241 +D+P+FLRKTY+M+ +C AAW+ GD+F+IKDPD+FA VIP++F HN FSSFVRQLNFYGFRKVK ++ V G +KWWEF+HD F+R KP LL++IRRATH G + E QEV L++EVG L+ ++ +M ID L+ +V L+ Sbjct: 20 KDEPIFLRKTYEMINTCEDVHAAWTAAGDTFVIKDPDTFANEVIPRFFKHNKFSSFVRQLNFYGFRKVKSNITV-------------------EGQDSKWWEFKHDLFLRDKPNLLSEIRRATHYGVTPEKQEVDDLRSEVGSLRLQVVDMDGRIDALSRMVDRLL 166
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|219113073|ref|XP_002186120.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582970|gb|ACI65590.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 175.637 bits (444), Expect = 3.912e-47 Identity = 84/192 (43.75%), Postives = 124/192 (64.58%), Query Frame = 0 Query: 69 GATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQD-VRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGAS-NEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVS 258 A N + + P+FLRKT+ M++SC P +AAWS G +F++KD + FA VIP++F HNNFSSFVRQLNFYGFRK+K D +R+ +N +++W+FRH+KF RG+P LL +IR++ H S +++EV HLK EV L+ ++ MSSD+++LT +V G ++ D KKRK++ Sbjct: 56 AAKTNEVNS-NAPIFLRKTFTMIDSCDPYVAAWSDDGYTFVVKDTEKFASEVIPEFFKHNNFSSFVRQLNFYGFRKIKSDPLRIKDAETN---------------EESRFWKFRHEKFQRGRPDLLGEIRKSNHNESADKREVEHLKNEVDHLRSKLATMSSDLEQLTGVV-GTLMKNCQLHDIDSKKRKIT 230
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|299117530|emb|CBN75374.1| (Heat Shock transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 169.474 bits (428), Expect = 2.574e-45 Identity = 85/178 (47.75%), Postives = 115/178 (64.61%), Query Frame = 0 Query: 80 QPLFLRKTYQMLESCSPS----IAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHG--ASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGAD 251 +P+FLRKT++M+ +CS S +A WS G++F++K PD+F+ VIP++F H+ FSSFVRQLNFYGFRKVK SNA+ G G ++KWWEF+HD F R K LLA +RRATH A+++QEV HL++EV +L+ I M I +LTSLV+ L V G D Sbjct: 23 EPIFLRKTFEMVSACSKSDGENLACWSPTGETFIVKHPDAFSSVVIPKFFKHSKFSSFVRQLNFYGFRKVK---------SNAS----------GAGVNSKWWEFKHDLFHRDKSHLLADMRRATHYGVAADKQEVEHLRSEVTRLRSHIDAMGDKIGQLTSLVESLSVEGHTGSGGD 181
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|1072223141|gb|OEU07898.1| (hypothetical protein FRACYDRAFT_197204 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 167.162 bits (422), Expect = 2.084e-44 Identity = 73/163 (44.79%), Postives = 107/163 (65.64%), Query Frame = 0 Query: 81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQD-VRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNE-QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM 241 P+FLRKTY+M+ +C+P +A WS G +F++ D + FA+ IPQ+F HNNF+SFVRQLNFYGF+K+K D +R+ N +K+W F HDKF+RG+P LL +I+++ E QEV LK+EV +LK+++ M+ D++RL SLV +M Sbjct: 49 PIFLRKTYEMINTCNPELAGWSEDGKTFVVYDNNKFAEETIPQFFKHNNFASFVRQLNFYGFKKIKYDPIRI--------------NRDQESSKESKYWPFHHDKFLRGRPDLLCEIKKSNQIEPAEKQEVDALKSEVNELKNQLSTMTKDMERLASLVGSMM 197
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|1173942319|gb|OQR91342.1| (HSF-type DNA-binding [Thraustotheca clavata]) HSP 1 Score: 161.77 bits (408), Expect = 1.104e-43 Identity = 78/202 (38.61%), Postives = 121/202 (59.90%), Query Frame = 0 Query: 81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKV-KQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNE----QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVA-KMGSEGAD-------PKKRKVSADRAAAAAVMV 269 P+FL+KTY M E+ ++AAW+ G + ++KDP FA+T++P+YF HNNF+SFVRQLNFYGFRK K+D+ +++ + WWEF HDKF+R P+L+AQIRR T+ + E +EV LK++V L+ ++ ++++ I LTS+V LM + K +E + PKK+K+ + M+ Sbjct: 15 PIFLQKTYTMFENSPEAVAAWANNGTTIVVKDPQEFARTMLPKYFKHNNFASFVRQLNFYGFRKYKKEDIMIVE-----------------DDVTKHWWEFYHDKFLRHHPELMAQIRRKTYSEAGEPTEKEEVEVLKSQVSSLQSQLAQLTNQITNLTSVVSTLMESQKRAAETTEEVVKQPSPKKQKIDDEHLVKIEPML 199
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|669163918|ref|XP_008617521.1| (hypothetical protein SDRG_13217 [Saprolegnia diclina VS20] >gi|530730820|gb|EQC29062.1| hypothetical protein SDRG_13217 [Saprolegnia diclina VS20]) HSP 1 Score: 159.073 bits (401), Expect = 1.401e-42 Identity = 78/191 (40.84%), Postives = 116/191 (60.73%), Query Frame = 0 Query: 81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKV-KQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNE----QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM-VAKMGSEGA------DPKKRKVSA 259 P+FL+KTY M E+ S+A+W+ G + ++KDP FA+T++P+YF HNNF+SFVRQLNFYGFRK K+D+ +++ + WWEF HDKF+R P+L+AQIRR T+ + E +EV LK++V L+ ++ ++++ I LTS+V LM K E PKK+K +A Sbjct: 15 PIFLQKTYTMFENSPDSVASWANNGTTIVVKDPQEFARTMLPKYFKHNNFASFVRQLNFYGFRKYKKEDIMIVE-----------------DDVTKHWWEFYHDKFLRHHPELMAQIRRKTYSEAGEPTEKEEVEVLKSQVTSLQSQLSQLTNQITNLTSVVSTLMETQKRALESVPEHAPPSPKKQKTAA 188
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|695455683|ref|XP_009536774.1| (hypothetical protein PHYSODRAFT_348169 [Phytophthora sojae] >gi|348667383|gb|EGZ07208.1| hypothetical protein PHYSODRAFT_348169 [Phytophthora sojae]) HSP 1 Score: 158.303 bits (399), Expect = 2.501e-42 Identity = 78/182 (42.86%), Postives = 109/182 (59.89%), Query Frame = 0 Query: 76 GGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATH---GASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKK 254 G P+FL+KTY M+ES P++A WS G SF+IK P FA+T++P+YF HNNFSSFVRQLNFYGFRK K+D V+ + S WWEF H+KF+RG+ +L+AQIRR T+ + + +EV LK V L+ ++ E+ + LT LV+ L+ K P++ Sbjct: 20 GASAAPVFLQKTYDMIESSPPAVACWSDAGTSFIIKLPREFAKTMLPRYFKHNNFSSFVRQLNFYGFRKHKKDEIVISTEED---------------ESKNWWEFYHEKFLRGRQELMAQIRRKTYSEPASPDHEEVETLKQSVQSLQGQVSELMGQLSDLTGLVKSLLQDKQAPMSLPPQR 186
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|669163916|ref|XP_008617520.1| (hypothetical protein SDRG_13216 [Saprolegnia diclina VS20] >gi|530730819|gb|EQC29061.1| hypothetical protein SDRG_13216 [Saprolegnia diclina VS20]) HSP 1 Score: 155.221 bits (391), Expect = 1.393e-41 Identity = 70/164 (42.68%), Postives = 99/164 (60.37%), Query Frame = 0 Query: 81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGA---SNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM 241 P+F++KTY + E SIAAW+ G + +IKDP FA ++P+YF HNNF SFVRQLNFYGFRK K++ L N + WWEF HDKF+R KP+L+ QIRR T+ ++++EV LK +V L+ + +++ I LT+LV L+ Sbjct: 12 PIFIQKTYTLFEESPSSIAAWANNGTTIVIKDPQQFATMMLPKYFKHNNFLSFVRQLNFYGFRKYKKEEVELVNNEN----------------TKHWWEFYHDKFLRAKPELMVQIRRKTYSEGDGTDKEEVEELKNQVNSLQSQFHQLTDQISSLTALVSTLI 159
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|1173937340|gb|OQR88162.1| (HSF-type DNA-binding [Achlya hypogyna]) HSP 1 Score: 154.836 bits (390), Expect = 1.958e-41 Identity = 74/188 (39.36%), Postives = 111/188 (59.04%), Query Frame = 0 Query: 81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKV-KQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGA---SNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKM----GSEGADPKKRKVSAD 260 P+F++KTY + E +IA+W+ G + +IKDP FA ++P+YF HNNF SFVRQLNFYGFRK K++V ++ S + WWEF HDKF+R KP+L+ QIRR T+ ++++EV LK +V L+++ Q+++ I LT+LV L+ + E KK+K+ D Sbjct: 12 PIFIQKTYTLFEESPAAIASWANNGTTIVIKDPQQFATMMLPKYFKHNNFLSFVRQLNFYGFRKYKKEEVELVNNES-----------------TKHWWEFFHDKFLRAKPELMVQIRRKTYSEGDGTDKEEVEELKNQVNSLQNQFQQLTDQISSLTTLVSTLLQTQKRPLDEPETVSVKKQKIEND 182 The following BLAST results are available for this feature:
BLAST of EWM29331.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|