EWM29331.1, cds1348 (CDS) Nannochloropsis gaditana

Overview
NameEWM29331.1
Unique Namecds1348
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:414787..415245 +
Alignment locationCM002457.1:415487..416107 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29331.1
ProductWinged helix-turn-helix transcription repressor
Orig transcript idgnl|cribi|Naga_100136g7.3182.mrna
GeneHSF
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:414787..415245 +
CM002457.1supercontigCM002457.1:415487..416107 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam
IPR011991WHTH_DNA-bd_dom
IPR000232HSF_DNA-bd
Homology
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|585111857|gb|EWM29331.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 733.021 bits (1891), Expect = 0.000e+0
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0
Query:    1 MTTAITTIRTSSRMRSLRGSGAAIAKQKPPVPVPVPSSSADEGADYDDDDGTSSLGGGSVVAANSGSTGATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVSADRAAAAAVMVALEGQRRGRKASGRQTGGRREGEEEDDDEEEEEEEESEGEGGRRGPGGCRGPGRSMEREASKRVFSRVRRGCQTCRPCPPRKERAMGATW 359
            MTTAITTIRTSSRMRSLRGSGAAIAKQKPPVPVPVPSSSADEGADYDDDDGTSSLGGGSVVAANSGSTGATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVSADRAAAAAVMVALEGQRRGRKASGRQTGGRREGEEEDDDEEEEEEEESEGEGGRRGPGGCRGPGRSMEREASKRVFSRVRRGCQTCRPCPPRKERAMGATW
Sbjct:    1 MTTAITTIRTSSRMRSLRGSGAAIAKQKPPVPVPVPSSSADEGADYDDDDGTSSLGGGSVVAANSGSTGATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVSADRAAAAAVMVALEGQRRGRKASGRQTGGRREGEEEDDDEEEEEEEESEGEGGRRGPGGCRGPGRSMEREASKRVFSRVRRGCQTCRPCPPRKERAMGATW 359          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|298710443|emb|CBJ25507.1| (Heat Shock transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 181.03 bits (458), Expect = 4.910e-49
Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = 0
Query:   78 RDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATH-GASNE-QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM 241
            +D+P+FLRKTY+M+ +C    AAW+  GD+F+IKDPD+FA  VIP++F HN FSSFVRQLNFYGFRKVK ++ V                    G  +KWWEF+HD F+R KP LL++IRRATH G + E QEV  L++EVG L+ ++ +M   ID L+ +V  L+
Sbjct:   20 KDEPIFLRKTYEMINTCEDVHAAWTAAGDTFVIKDPDTFANEVIPRFFKHNKFSSFVRQLNFYGFRKVKSNITV-------------------EGQDSKWWEFKHDLFLRDKPNLLSEIRRATHYGVTPEKQEVDDLRSEVGSLRLQVVDMDGRIDALSRMVDRLL 166          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|219113073|ref|XP_002186120.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582970|gb|ACI65590.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 175.637 bits (444), Expect = 3.912e-47
Identity = 84/192 (43.75%), Postives = 124/192 (64.58%), Query Frame = 0
Query:   69 GATNNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQD-VRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGAS-NEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVS 258
             A  N +   + P+FLRKT+ M++SC P +AAWS  G +F++KD + FA  VIP++F HNNFSSFVRQLNFYGFRK+K D +R+    +N                 +++W+FRH+KF RG+P LL +IR++ H  S +++EV HLK EV  L+ ++  MSSD+++LT +V G ++        D KKRK++
Sbjct:   56 AAKTNEVNS-NAPIFLRKTFTMIDSCDPYVAAWSDDGYTFVVKDTEKFASEVIPEFFKHNNFSSFVRQLNFYGFRKIKSDPLRIKDAETN---------------EESRFWKFRHEKFQRGRPDLLGEIRKSNHNESADKREVEHLKNEVDHLRSKLATMSSDLEQLTGVV-GTLMKNCQLHDIDSKKRKIT 230          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|299117530|emb|CBN75374.1| (Heat Shock transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 169.474 bits (428), Expect = 2.574e-45
Identity = 85/178 (47.75%), Postives = 115/178 (64.61%), Query Frame = 0
Query:   80 QPLFLRKTYQMLESCSPS----IAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHG--ASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGAD 251
            +P+FLRKT++M+ +CS S    +A WS  G++F++K PD+F+  VIP++F H+ FSSFVRQLNFYGFRKVK         SNA+          G G ++KWWEF+HD F R K  LLA +RRATH   A+++QEV HL++EV +L+  I  M   I +LTSLV+ L V      G D
Sbjct:   23 EPIFLRKTFEMVSACSKSDGENLACWSPTGETFIVKHPDAFSSVVIPKFFKHSKFSSFVRQLNFYGFRKVK---------SNAS----------GAGVNSKWWEFKHDLFHRDKSHLLADMRRATHYGVAADKQEVEHLRSEVTRLRSHIDAMGDKIGQLTSLVESLSVEGHTGSGGD 181          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|1072223141|gb|OEU07898.1| (hypothetical protein FRACYDRAFT_197204 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 167.162 bits (422), Expect = 2.084e-44
Identity = 73/163 (44.79%), Postives = 107/163 (65.64%), Query Frame = 0
Query:   81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQD-VRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNE-QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM 241
            P+FLRKTY+M+ +C+P +A WS  G +F++ D + FA+  IPQ+F HNNF+SFVRQLNFYGF+K+K D +R+              N        +K+W F HDKF+RG+P LL +I+++      E QEV  LK+EV +LK+++  M+ D++RL SLV  +M
Sbjct:   49 PIFLRKTYEMINTCNPELAGWSEDGKTFVVYDNNKFAEETIPQFFKHNNFASFVRQLNFYGFKKIKYDPIRI--------------NRDQESSKESKYWPFHHDKFLRGRPDLLCEIKKSNQIEPAEKQEVDALKSEVNELKNQLSTMTKDMERLASLVGSMM 197          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|1173942319|gb|OQR91342.1| (HSF-type DNA-binding [Thraustotheca clavata])

HSP 1 Score: 161.77 bits (408), Expect = 1.104e-43
Identity = 78/202 (38.61%), Postives = 121/202 (59.90%), Query Frame = 0
Query:   81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKV-KQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNE----QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVA-KMGSEGAD-------PKKRKVSADRAAAAAVMV 269
            P+FL+KTY M E+   ++AAW+  G + ++KDP  FA+T++P+YF HNNF+SFVRQLNFYGFRK  K+D+ +++                    +  WWEF HDKF+R  P+L+AQIRR T+  + E    +EV  LK++V  L+ ++ ++++ I  LTS+V  LM + K  +E  +       PKK+K+  +       M+
Sbjct:   15 PIFLQKTYTMFENSPEAVAAWANNGTTIVVKDPQEFARTMLPKYFKHNNFASFVRQLNFYGFRKYKKEDIMIVE-----------------DDVTKHWWEFYHDKFLRHHPELMAQIRRKTYSEAGEPTEKEEVEVLKSQVSSLQSQLAQLTNQITNLTSVVSTLMESQKRAAETTEEVVKQPSPKKQKIDDEHLVKIEPML 199          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|669163918|ref|XP_008617521.1| (hypothetical protein SDRG_13217 [Saprolegnia diclina VS20] >gi|530730820|gb|EQC29062.1| hypothetical protein SDRG_13217 [Saprolegnia diclina VS20])

HSP 1 Score: 159.073 bits (401), Expect = 1.401e-42
Identity = 78/191 (40.84%), Postives = 116/191 (60.73%), Query Frame = 0
Query:   81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKV-KQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNE----QEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM-VAKMGSEGA------DPKKRKVSA 259
            P+FL+KTY M E+   S+A+W+  G + ++KDP  FA+T++P+YF HNNF+SFVRQLNFYGFRK  K+D+ +++                    +  WWEF HDKF+R  P+L+AQIRR T+  + E    +EV  LK++V  L+ ++ ++++ I  LTS+V  LM   K   E         PKK+K +A
Sbjct:   15 PIFLQKTYTMFENSPDSVASWANNGTTIVVKDPQEFARTMLPKYFKHNNFASFVRQLNFYGFRKYKKEDIMIVE-----------------DDVTKHWWEFYHDKFLRHHPELMAQIRRKTYSEAGEPTEKEEVEVLKSQVTSLQSQLSQLTNQITNLTSVVSTLMETQKRALESVPEHAPPSPKKQKTAA 188          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|695455683|ref|XP_009536774.1| (hypothetical protein PHYSODRAFT_348169 [Phytophthora sojae] >gi|348667383|gb|EGZ07208.1| hypothetical protein PHYSODRAFT_348169 [Phytophthora sojae])

HSP 1 Score: 158.303 bits (399), Expect = 2.501e-42
Identity = 78/182 (42.86%), Postives = 109/182 (59.89%), Query Frame = 0
Query:   76 GGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATH---GASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKK 254
            G    P+FL+KTY M+ES  P++A WS  G SF+IK P  FA+T++P+YF HNNFSSFVRQLNFYGFRK K+D  V+    +                S  WWEF H+KF+RG+ +L+AQIRR T+    + + +EV  LK  V  L+ ++ E+   +  LT LV+ L+  K       P++
Sbjct:   20 GASAAPVFLQKTYDMIESSPPAVACWSDAGTSFIIKLPREFAKTMLPRYFKHNNFSSFVRQLNFYGFRKHKKDEIVISTEED---------------ESKNWWEFYHEKFLRGRQELMAQIRRKTYSEPASPDHEEVETLKQSVQSLQGQVSELMGQLSDLTGLVKSLLQDKQAPMSLPPQR 186          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|669163916|ref|XP_008617520.1| (hypothetical protein SDRG_13216 [Saprolegnia diclina VS20] >gi|530730819|gb|EQC29061.1| hypothetical protein SDRG_13216 [Saprolegnia diclina VS20])

HSP 1 Score: 155.221 bits (391), Expect = 1.393e-41
Identity = 70/164 (42.68%), Postives = 99/164 (60.37%), Query Frame = 0
Query:   81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGA---SNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLM 241
            P+F++KTY + E    SIAAW+  G + +IKDP  FA  ++P+YF HNNF SFVRQLNFYGFRK K++   L    N                +  WWEF HDKF+R KP+L+ QIRR T+     ++++EV  LK +V  L+ +  +++  I  LT+LV  L+
Sbjct:   12 PIFIQKTYTLFEESPSSIAAWANNGTTIVIKDPQQFATMMLPKYFKHNNFLSFVRQLNFYGFRKYKKEEVELVNNEN----------------TKHWWEFYHDKFLRAKPELMVQIRRKTYSEGDGTDKEEVEELKNQVNSLQSQFHQLTDQISSLTALVSTLI 159          
BLAST of EWM29331.1 vs. NCBI_GenBank
Match: gi|1173937340|gb|OQR88162.1| (HSF-type DNA-binding [Achlya hypogyna])

HSP 1 Score: 154.836 bits (390), Expect = 1.958e-41
Identity = 74/188 (39.36%), Postives = 111/188 (59.04%), Query Frame = 0
Query:   81 PLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKV-KQDVRVLQGGSNAAASSNPANAGGGGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGA---SNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKM----GSEGADPKKRKVSAD 260
            P+F++KTY + E    +IA+W+  G + +IKDP  FA  ++P+YF HNNF SFVRQLNFYGFRK  K++V ++   S                 +  WWEF HDKF+R KP+L+ QIRR T+     ++++EV  LK +V  L+++ Q+++  I  LT+LV  L+  +       E    KK+K+  D
Sbjct:   12 PIFIQKTYTLFEESPAAIASWANNGTTIVIKDPQQFATMMLPKYFKHNNFLSFVRQLNFYGFRKYKKEEVELVNNES-----------------TKHWWEFFHDKFLRAKPELMVQIRRKTYSEGDGTDKEEVEELKNQVNSLQNQFQQLTDQISSLTTLVSTLLQTQKRPLDEPETVSVKKQKIEND 182          
The following BLAST results are available for this feature:
BLAST of EWM29331.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111857|gb|EWM29331.1|0.000e+0100.00Winged helix-turn-helix transcription repressor [N... [more]
gi|298710443|emb|CBJ25507.1|4.910e-4950.00Heat Shock transcription factor [Ectocarpus silicu... [more]
gi|219113073|ref|XP_002186120.1|3.912e-4743.75predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299117530|emb|CBN75374.1|2.574e-4547.75Heat Shock transcription factor [Ectocarpus silicu... [more]
gi|1072223141|gb|OEU07898.1|2.084e-4444.79hypothetical protein FRACYDRAFT_197204 [Fragilario... [more]
gi|1173942319|gb|OQR91342.1|1.104e-4338.61HSF-type DNA-binding [Thraustotheca clavata][more]
gi|669163918|ref|XP_008617521.1|1.401e-4240.84hypothetical protein SDRG_13217 [Saprolegnia dicli... [more]
gi|695455683|ref|XP_009536774.1|2.501e-4242.86hypothetical protein PHYSODRAFT_348169 [Phytophtho... [more]
gi|669163916|ref|XP_008617520.1|1.393e-4142.68hypothetical protein SDRG_13216 [Saprolegnia dicli... [more]
gi|1173937340|gb|OQR88162.1|1.958e-4139.36HSF-type DNA-binding [Achlya hypogyna][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1350rna1350Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications