rna1344, rna1344 (mRNA) Nannochloropsis gaditana

Overview
Namerna1344
Unique Namerna1344
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length601
Alignment locationCM002457.1:398884..400224 +

Link to JBrowse

Properties
Property NameValue
Productu3 small nucleolar ribonucleoprotein mpp10
Orig transcript idgnl|cribi|Naga_100136g1.3165.mrna
Orig protein idgnl|cribi|Naga_100136g1.3165
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:398884..400224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100136g1gene1298Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1344rna1344-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29314.1cds1342Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1344 ID=rna1344|Name=rna1344|organism=Nannochloropsis gaditana|type=mRNA|length=601bp
CAGGGAGCAGGCAATGCCAAGAAAAAAACGAAATCAAGCCAAGAGAGGCA
GCGACAGCAATGATGGACCGGAAGGCGATGTCTTGGCCAAGCCCTCCCAC
GGCTTCAACGCCACCCTCAGCCCGCCTGGGCCTGATCTCGCAATCCCTAC
CTGCTTTCAAGACGCTTTGAAGCGCCTTCACGCGCTGACAAATGCCCCTG
AGACCTTCGTTATGCCCCCATCAGAGCTTGCTGAGATGTTGACGCAGGTG
CTGAAAATGCTGTTCGATTACGCACGCGGGACTCAGCCCATAAAACTGGG
GCCGTTGCGGGAATTGGCCGTGGACGGATTCGACGCGGAGACAATTTGGG
AGCAGTTGCAACTACGAAATCCCGCTGTGCGTCATTTCGTTTCGAAGGTT
ACCAGAAAGCTGCTGGAGAAAGGGGAGGAATTGGTCTTGTGTGAGGAGGA
AGAGGAGGAAGTGGAGGAAGCGGAGCATGAGGAGGCCGAAGAGGAGGAAG
CGGAGGACGACGGGGAGGAGGAGAGGTTTGAAGAAGACGAAGTGGTGGTG
GAGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGGAGAGGAAGAGGAGATG
A
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protein sequence of rna1344

>rna1344-protein ID=rna1344-protein|Name=rna1344|organism=Nannochloropsis gaditana|type=polypeptide|length=415bp
FFGDRDEAEGEKGEEEEDEEEEEEEEEEEEEEGVEEEEEGNDLERLDGMG
REKGKEREGGDSRSGARRRQEGEEEVAQEGLLTSFQKEQRARRKEIAELE
RELLSERPWELRGEVKATERPENSLLEAVVDVELARRPEVLMTVERSQSL
EEMIKARVAEGRWDDVVPQALGEEVMMNRRGHKEELPEVSQEKAGEGLGE
VYEKEYLRLAMGQEGETKESKEKAELAALFRKLSAKLDALSNFNFTPKAA
HVEVSVQSNVPAIAMEEVLPMAVGQGSTLAPEEVHGKKRGREGVVRESAE
MDQGDRRRLRRGKKAARRKARRQKTAEDRLVHRLNPGLGNKYAKEKLQSE
IRSSGKVVLGTKDSGSQKGAYSTSGKFFAGLQEEVSKHGGAYAKQRSTGL
ESEKKKFKGGNALKL
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mRNA from alignment at CM002457.1:398884..400224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1344 ID=rna1344|Name=rna1344|organism=Nannochloropsis gaditana|type=mRNA|length=1341bp|location=Sequence derived from alignment at CM002457.1:398884..400224+ (Nannochloropsis gaditana)
TTCTTCGGGGACAGGGACGaagcggagggcgagaagggggaagaggagga
ggacgaggaggaggaagaggaggaggaagaggaggaggaggaggaggggg
ttgaggaggaggaggaaggaaacgatcTAGAGAGGTTGGATGGAATGGGT
CGTGAGAAGGgtaaagaaagagaggggggtgACAGCCGGAGTGGGGCCCG
TCGTCGAcaagagggcgaggaggaggtggcccaGGAGGGGCTTCTGACCA
GCTTTCAGAAGGAGCAACGGGCTCGGCGGAAGGAAATTGCCGAGCTGGAG
CGGGAACTGCTCTCGGAGCGGCCCTGGGAGCTCCgtggggaggtgaaggc
gaCGGAGCGACCGGAGAACTCCTTGCtggaggcagtggtggacgtggagc
tgGCCCGACGGCCCGAGGTCTTAATGACGGTGGAACGGAGCCAGTcgttg
gaggagatgatcAAGGCGAGGGTAGCAGAAGGACGGTGGGACGACGTGGT
GCCCCAGGcgttgggagaggaggtgatgaTGAACAGGCGGGggcacaagg
aggagcttcCCGAGGTCTCacaggagaaggcgggcgagggtCTGGGCGAG
GTCTACGAGAAGGAGTATCTACGCCTGGCgatggggcaggaaggggagac
gaaggagagcaaggagaaggcggagctTGCAGCCCTCTTTCGAAAGCTCT
CTGCGAAGCTGGACGCTTTGTCGAACTTCAACTTCACGCCCAAGGCGGCC
CATGTGGAGGTGAGCGTCCAGAGCAACGTCCCCGCCAtcgccatggagga
ggtgttgcCGATGGCGGTCGGGCAAGGGAGCACGTTGGCGCCCGAGGAAG
TGCACgggaagaagcgagggagggaaggggtggtgcGGGAATCTGCGGAA
ATGGACCAAGGCGACCGACGACGCCTGCGCCGGGGCAAGAAAGCAGCCCG
ACGCAAGGCGCGACGGCAGAAGACGGCGGAGGACAGACTGGTGCACCGCC
TGAATCCAGGCTTGGGCAACAAATACGCCAAGGAGAAGCTCCAGTCGGAA
ATTAGGTCGAGTGGGAAGGTGGTGTTGGGAACGAAGGACTCGGGGAGCCA
GAAGGGAGCCTATAGCACGTCAGGAAAATTCTTCGCAGGCctccaggagg
aggtaagcAAGCATGGAGGGGCGTACGCGAAGCAACGCTCCACCGGTTTG
GAGAGTGAAAAGAAGAAGTtcaagggggggaacgcATTGAAGCTTTGAGT
GGACGCGGTCCCCACCCGACGGGCTCGGGTGGAAAGTACACAATGTAGAT
GCCGCGGGTGACAAAGAACCAAGCAATTTTTGTCGTTAGTG
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Coding sequence (CDS) from alignment at CM002457.1:398884..400224+

>rna1344 ID=rna1344|Name=rna1344|organism=Nannochloropsis gaditana|type=CDS|length=1248bp|location=Sequence derived from alignment at CM002457.1:398884..400224+ (Nannochloropsis gaditana)
TTCTTCGGGGACAGGGACGaagcggagggcgagaagggggaagaggagga
ggacgaggaggaggaagaggaggaggaagaggaggaggaggaggaggggg
ttgaggaggaggaggaaggaaacgatcTAGAGAGGTTGGATGGAATGGGT
CGTGAGAAGGgtaaagaaagagaggggggtgACAGCCGGAGTGGGGCCCG
TCGTCGAcaagagggcgaggaggaggtggcccaGGAGGGGCTTCTGACCA
GCTTTCAGAAGGAGCAACGGGCTCGGCGGAAGGAAATTGCCGAGCTGGAG
CGGGAACTGCTCTCGGAGCGGCCCTGGGAGCTCCgtggggaggtgaaggc
gaCGGAGCGACCGGAGAACTCCTTGCtggaggcagtggtggacgtggagc
tgGCCCGACGGCCCGAGGTCTTAATGACGGTGGAACGGAGCCAGTcgttg
gaggagatgatcAAGGCGAGGGTAGCAGAAGGACGGTGGGACGACGTGGT
GCCCCAGGcgttgggagaggaggtgatgaTGAACAGGCGGGggcacaagg
aggagcttcCCGAGGTCTCacaggagaaggcgggcgagggtCTGGGCGAG
GTCTACGAGAAGGAGTATCTACGCCTGGCgatggggcaggaaggggagac
gaaggagagcaaggagaaggcggagctTGCAGCCCTCTTTCGAAAGCTCT
CTGCGAAGCTGGACGCTTTGTCGAACTTCAACTTCACGCCCAAGGCGGCC
CATGTGGAGGTGAGCGTCCAGAGCAACGTCCCCGCCAtcgccatggagga
ggtgttgcCGATGGCGGTCGGGCAAGGGAGCACGTTGGCGCCCGAGGAAG
TGCACgggaagaagcgagggagggaaggggtggtgcGGGAATCTGCGGAA
ATGGACCAAGGCGACCGACGACGCCTGCGCCGGGGCAAGAAAGCAGCCCG
ACGCAAGGCGCGACGGCAGAAGACGGCGGAGGACAGACTGGTGCACCGCC
TGAATCCAGGCTTGGGCAACAAATACGCCAAGGAGAAGCTCCAGTCGGAA
ATTAGGTCGAGTGGGAAGGTGGTGTTGGGAACGAAGGACTCGGGGAGCCA
GAAGGGAGCCTATAGCACGTCAGGAAAATTCTTCGCAGGCctccaggagg
aggtaagcAAGCATGGAGGGGCGTACGCGAAGCAACGCTCCACCGGTTTG
GAGAGTGAAAAGAAGAAGTtcaagggggggaacgcATTGAAGCTTTGA
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Synonyms
Publications