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Properties
| Property Name | Value |
|---|
| Product | u3 small nucleolar ribonucleoprotein mpp10 |
| Orig transcript id | gnl|cribi|Naga_100205g1.2984.mrna |
| Orig protein id | gnl|cribi|Naga_100205g1.2984 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:397973..398778 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1343 ID=rna1343|Name=rna1343|organism=Nannochloropsis gaditana|type=mRNA|length=2022bp
TTTCCACAGCTCAGGAAGGGGAACGCCAGCGGCGAAGACACACCGCGAGA
GACGGATCAAATCAAGCGAGCATTCAGTCTTTTTAAGCGCATACGGCCCC
GTGGCAATCAAGGTATCCACTTACAGTGCCCCTTCTCGTCCAAACACAGG
ACCTTCGTCGGTGCCAATTGAAAGTGATGAAGCGCGCCCGGGAGCCGGAA
GACAATAACGGCACTGTCCATGGAAGTCGCGATCGGGCCTCTACGTCCTC
AGTGGCACCGAAAGCATCCTCTCTACGACCGAAATGTCCCTATTTGGACA
CCGTCAACAGGACTTACCTGGACTTTGACTTCGAAAAGCTTTGCTCCGTC
TCTCTTTCAAACATGAACATCTACGTATGCTTGGTCTGCGGCAAATTTTT
CCAGGGCCGAGGCCCTCGCACGCACGCCCATACCCACTCACTTCACGACT
TCCACCACGTCTTTATGAACCTGCACACGGCTCGTATTTTTTGCTTACCC
GACAACTACGAGGTCCTGGACTCCTCCTTGGACGACATCAAGCGCGCCCT
TTTTCCCTCCTTCACCCCTGCTGCCATCGCGCAGCTTGACACGAACACGA
CCCTCGTCCGGGACGTGCACGGCGTTTCCTACCTCCCGGGCTTTGTGGGC
CTCAACAACTTGAAGAGCACGGACTATGTGAACGTCGTCCTACAGGCTCT
GGGTCATGTGACCCCTCTCCGGAACTACTTCTTGCAGCCCTCCTTGTACG
AAGCTGGGGCGAAGAACCAGTTGGTGTTGCGCTTTGGGGAAGTGATGCGT
AAATTGTGGAGCCAAGACAATTTCAAAAGCACTGTCTCGCCCCACGATTT
TCTGCAAGAAGTGGTGAGCGCGAGCGGGAAGCGGTTCGCGATCGGGAAGC
CGGGGGAGGCGGTGGATTTCTTGTCCTGGCTCCTGCACCAGCTGCACGTG
GGGCTGGGGGGAACGATGCCGATGGTGGGCTGCAAGGGTGGGGAGGGAGG
GAAGAAGAAGAAGGCGGGGAGGAGGAGCGTGGTTCTGGACTGCTTTCAAG
GGGAAATCCGTGTCCGGACTCTGACTAAGGCGCGGAAGGATTGGACGGTG
GGGGGGCGGGGGGAGGAGGAAGGGGATGAGGACGACGGCACCGGGAGGGG
TAACGGGGCGCAGGAAGAGAAGGAGGGGGAGCCGGCGGGGGAATGGGCCG
TGAGCGAGACGCGGTCGCCCTTTTTGTTCCTGACGGTGGATATCCCCCAG
ACGCCCCTCTTCAAGGACTCACAGGGGGGGGTCATCATCCCTCACATACC
GCTCTACAGCGTGCTGGACAAGTTCAACGGCGTCAAAGTGGTGGACGCGG
TCAAGGCGGGCGTGCACACGCGGAAGCAGTATTGGATCACGCGCCTCCCT
CAGTACCTGATTCTCTCCCTGGCCCGGCTCACGCGCAACCATTTCTTCGT
GGAGAAGAACCCGACCATCGTCAACTTCCCCGTGAAGAATTTGGAGCTCA
GGGATTATTTCTTGCCGGAGGCTGGCCTGCCCACAGAGGAAGGCCTGAAG
ACGATGACCGTGGGGGAATTGAAAGGCTTCGTACAGGCGCATGGGGGGGG
CGACGCGAAGGAGGCCGTGGAGCGGGAGGATCTGGAGGAGCAAGCGCGTG
CGGTGCTCAACGAGGTGGCGGGGACCAAGTACGACCTGGTGGCCAACGTA
GTGCACGACTCGCCCCCCGGGCAGGAGAAGAAGGAAGCGGCGCGGGGGGA
GGCCACGCCGCCAGGCACCTACCGGGTGCACGTGTTTAACCGGGCCTCGG
ACCAGTGGTACGAGATCCAGGACTTGCACGTCCAGGAGACCCTCCCGCAA
CTCATCACCATCAGTGAGAGTTGTGTGTTGATATACGAGAAGAAAGGGGT
GGAACGAGCGCGAGGCTGCGGAAGGGGCCACTGAGGGAACAGGAAGAAGG
GCCGCGCCCGATAGGGTGTGGGGCGTAAGGAAGGGAGAGAAGCAACAAGT
AGTCTAGAGTATGACTATCTCC back to topprotein sequence of rna1343 >rna1343-protein ID=rna1343-protein|Name=rna1343|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MPRKKRNQAKRGSDSNDGPEGDVLAKPSHGFNATLSPPGPDLAIPTCFQD
ALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRE
LAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEV
EEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR back to topmRNA from alignment at CM002457.1:397973..398778+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1343 ID=rna1343|Name=rna1343|organism=Nannochloropsis gaditana|type=mRNA|length=806bp|location=Sequence derived from alignment at CM002457.1:397973..398778+ (Nannochloropsis gaditana)
CAGGGAGCAGGCAATGCCAAGAAAAAAACGAAATCAAGCCAAGAGAGGCA
GCGACAGCAATGATGGACCGGAAGGCGATGTCTTGGCCAAGCCCTCCCAC
GGCTTCAACGCCACCCTCAGCCCGCCTGGGCCTGATCTCGCAATCCCTAC
CTGCTTTCAAGACGCTTTGAAGCGCCTTCACGCGCTGACAAATGCCCCTG
AGACCTTCGTTATGCCCCCATCAGAGCTTGCTGAGGTATGTTGAGAAATT
TACACTTCCCTAGGAACATATTGTAGCGCCCTTGcaggcgaagaggacga
gccCGTTCCCTCAGACACGCCGGTACCTGCCTTCATACGTGCGCTTGTGT
ACCCGCTACGTTGAATGAAGGATTGCATACTCTTTTTACTTAAGTATCTT
TGTATCTATCATCCTCTCTTGAACGGCGCTCATCCTGCAGATGTTGACGC
AGGTGCTGAAAATGCTGTTCGATTACGCACGCGGGACTCAGCCCATAAAA
CTGGGGCCGTTGCGGGAATTGGCCGTGGACGGATTCGACGCGGAGACAAT
TTGGGAGCAGTTGCAACTACGAAATCCCGCTGTGCGTCATTTCGTTTCGA
AGGTTACCAGAAAGCTgctggagaaaggggaggaattGGTCTtgtgtgag
gaggaagaggaggaagtggaggaagcggagcatgaggaggccgaagagga
ggaagcggaggacgacggggaggaggagaggtttgaagaagacgaagtgg
tggtggaggaggaggaggaggaggaggaggggaaggaggagaggaagagg
agatga back to topCoding sequence (CDS) from alignment at CM002457.1:397973..398778+ >rna1343 ID=rna1343|Name=rna1343|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at CM002457.1:397973..398778+ (Nannochloropsis gaditana)
ATGCCAAGAAAAAAACGAAATCAAGCCAAGAGAGGCAGCGACAGCAATGA
TGGACCGGAAGGCGATGTCTTGGCCAAGCCCTCCCACGGCTTCAACGCCA
CCCTCAGCCCGCCTGGGCCTGATCTCGCAATCCCTACCTGCTTTCAAGAC
GCTTTGAAGCGCCTTCACGCGCTGACAAATGCCCCTGAGACCTTCGTTAT
GCCCCCATCAGAGCTTGCTGAGATGTTGACGCAGGTGCTGAAAATGCTGT
TCGATTACGCACGCGGGACTCAGCCCATAAAACTGGGGCCGTTGCGGGAA
TTGGCCGTGGACGGATTCGACGCGGAGACAATTTGGGAGCAGTTGCAACT
ACGAAATCCCGCTGTGCGTCATTTCGTTTCGAAGGTTACCAGAAAGCTgc
tggagaaaggggaggaattGGTCTtgtgtgaggaggaagaggaggaagtg
gaggaagcggagcatgaggaggccgaagaggaggaagcggaggacgacgg
ggaggaggagaggtttgaagaagacgaagtggtggtggaggaggaggagg
aggaggaggaggggaaggaggagaggaagaggagatgaATGCCAAGAAAA
AAACGAAATCAAGCCAAGAGAGGCAGCGACAGCAATGATGGACCGGAAGG
CGATGTCTTGGCCAAGCCCTCCCACGGCTTCAACGCCACCCTCAGCCCGC
CTGGGCCTGATCTCGCAATCCCTACCTGCTTTCAAGACGCTTTGAAGCGC
CTTCACGCGCTGACAAATGCCCCTGAGACCTTCGTTATGCCCCCATCAGA
GCTTGCTGAGATGTTGACGCAGGTGCTGAAAATGCTGTTCGATTACGCAC
GCGGGACTCAGCCCATAAAACTGGGGCCGTTGCGGGAATTGGCCGTGGAC
GGATTCGACGCGGAGACAATTTGGGAGCAGTTGCAACTACGAAATCCCGC
TGTGCGTCATTTCGTTTCGAAGGTTACCAGAAAGCTgctggagaaagggg
aggaattGGTCTtgtgtgaggaggaagaggaggaagtggaggaagcggag
catgaggaggccgaagaggaggaagcggaggacgacggggaggaggagag
gtttgaagaagacgaagtggtggtggaggaggaggaggaggaggaggagg
ggaaggaggagaggaagaggagatga back to top
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