EWM29332.1, cds1341 (CDS) Nannochloropsis gaditana

Overview
NameEWM29332.1
Unique Namecds1341
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:397986..398207 +
Alignment locationCM002457.1:398413..398778 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29332.1
Productu3 small nucleolar ribonucleoprotein mpp10
Orig transcript idgnl|cribi|Naga_100205g1.2984.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:397986..398207 +
CM002457.1supercontigCM002457.1:398413..398778 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0034457Mpp10 complex
GO:0005732small nucleolar ribonucleoprotein complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012173snoRNP_Mpp10
Homology
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|585111859|gb|EWM29332.1| (u3 small nucleolar ribonucleoprotein mpp10 [Nannochloropsis gaditana])

HSP 1 Score: 387.111 bits (993), Expect = 6.443e-136
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MPRKKRNQAKRGSDSNDGPEGDVLAKPSHGFNATLSPPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR 195
            MPRKKRNQAKRGSDSNDGPEGDVLAKPSHGFNATLSPPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR
Sbjct:    1 MPRKKRNQAKRGSDSNDGPEGDVLAKPSHGFNATLSPPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR 195          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1051216166|ref|XP_017691413.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Lepidothrix coronata])

HSP 1 Score: 71.2478 bits (173), Expect = 4.343e-11
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 0
Query:   39 GPDLAIPTC--FQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSK-VTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEE 181
            GP   IP     Q  L+   A    PE F+     LA     + K L+D  +G   +  GPL+EL ++ FD E IW+QL+LRN AV  F  K +TR    K + L L  ++EE+  +AE   + EEE ED+  E   E+ +V  ++
Sbjct:    4 GPVPGIPGIQGIQTGLRVTGAAAARPERFLSVQEGLAANFRALTKTLYDLNKGNHIVPGGPLKELVIENFDEEQIWQQLELRNSAVLDFFRKSITRDA--KDDNLCLLSDQEEDGSDAEP--SSEEELEDNVMEAEAEQKDVYTKD 145          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|959053251|ref|XP_014729433.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Sturnus vulgaris])

HSP 1 Score: 70.8626 bits (172), Expect = 7.142e-11
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 0
Query:   38 PGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR 195
            PG  L I TC    L+   A    PE F+     LA     + K L+D  +G+  ++ GPL+EL ++ FD E IW+QL+L+N AV  F  K   K  E  E+L L  + EE+  +AE   + +EE ED+  E   EE  V  +++++ +   +E++ +
Sbjct:    5 PGV-LGIQTC----LRVAGAAAARPECFLSVQDGLAADFRAMTKTLYDLNKGSNIVRGGPLKELVIENFDEEQIWQQLELQNNAVLDFFKKSIAKDAE-DEDLCLLSDREEDGSDAET--SSDEEFEDNVMEAETEEMNVYTKDKDKHKPKAKEKQSK 154          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1183422533|gb|ORY46862.1| (Mpp10 protein, partial [Rhizoclosmatium globosum])

HSP 1 Score: 70.4774 bits (171), Expect = 9.776e-11
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 0
Query:   58 LTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEK-----GEELVLCEEEE 147
            + + PE F++P   L+  L    K +FD A+ ++P ++ PL EL  DGFD + IWEQ+QLRN  +  +V+     ++ +     G+E V   EEE
Sbjct:   97 IISHPEKFLVPDVTLSNTLLDAAKWMFDLAKHSEPFEMSPLAELLTDGFDLDQIWEQMQLRNRPMVKYVTATASDVISRDQQGEGDEDVFDSEEE 191          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|768936223|ref|XP_011608443.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X2 [Takifugu rubripes])

HSP 1 Score: 68.1662 bits (165), Expect = 5.399e-10
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0
Query:   39 GPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQP--IKLGPLRELAVDGFDAETIWEQLQLRNPAV-RHFVSKVTRKLLEKGEELVLCEEEEEEV 150
            GP   + T  +D LK+++A T  P  F+    E+A   T + K L+D  +  +P   K  PL EL V+ FD E IW++L+L+N AV RHF S +   L +  E L L  + +EE+
Sbjct:    8 GP---LVTVLEDCLKKINANTAQPVNFLSLQDEVATDFTSLTKTLYDLHKAEEPGHYKGSPLTELLVENFDEEQIWQELELQNKAVLRHFNSAIEEGLFD--EPLTLLIKHQEEI 117          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|768936221|ref|XP_003969979.2| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Takifugu rubripes])

HSP 1 Score: 68.1662 bits (165), Expect = 5.505e-10
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0
Query:   39 GPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQP--IKLGPLRELAVDGFDAETIWEQLQLRNPAV-RHFVSKVTRKLLEKGEELVLCEEEEEEV 150
            GP   + T  +D LK+++A T  P  F+    E+A   T + K L+D  +  +P   K  PL EL V+ FD E IW++L+L+N AV RHF S +   L +  E L L  + +EE+
Sbjct:    8 GP---LVTVLEDCLKKINANTAQPVNFLSLQDEVATDFTSLTKTLYDLHKAEEPGHYKGSPLTELLVENFDEEQIWQELELQNKAVLRHFNSAIEEGLFD--EPLTLLIKHQEEI 117          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1108923915|ref|XP_010729505.2| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Larimichthys crocea])

HSP 1 Score: 67.3958 bits (163), Expect = 9.113e-10
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 0
Query:   44 IPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQP--IKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAE 154
            + +  ++ +K+++A+T  PE F+     +A   T + K L+D  +  QP   K  PL +L V+ FD E IW++L+L+N AV       T K L      +L EEE  + EE E
Sbjct:    6 VWSVLEECVKKINAITAQPENFLSLQDGVAADFTSLTKTLYDLHKAQQPAGYKGSPLAQLVVENFDEEQIWQELELQNDAVLEHFKNATNKALTDKTLTLLAEEEVSDGEEVE 118          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|543354633|ref|XP_005521802.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Pseudopodoces humilis])

HSP 1 Score: 66.6254 bits (161), Expect = 1.893e-9
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 0
Query:   37 PPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDD 166
            P  P +      Q  L+   A    PE F+     LA     + K L+D  +G+  ++ GPL+EL ++ FD E IW+QL+L+N AV  F  K   +  E  E+L L  ++EE+  +AE   + ++E ED+
Sbjct:    5 PGAPGVQAIQRIQTCLRVAGAAAARPECFLSVQDGLAADFRAMTKTLYDLNKGSNIVRGGPLKELVIENFDEEQIWQQLELQNNAVLDFFKKSIARDAE-DEDLCLLSDQEEDGSDAET--SSDKELEDN 131          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1176276931|ref|XP_020640393.1| (U3 small nucleolar ribonucleoprotein protein MPP10 [Pogona vitticeps])

HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-9
Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 0
Query:   43 AIPTCFQDA-LKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDY--ARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVR-HFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKR 194
            A P+   DA L  L + T+ PE F+     LA     + K L+D+  A GT  +   PL+EL V+GFD E IW+QL+L+N AV   F   + R + E+G++L L  EEEEE EE +   A   + + D E+E  EE ++  +  EEE + KE+ +R
Sbjct:    8 AGPSGRLDAWLAVLSSATSRPERFLSIQDGLACDFISLTKTLYDFHKAHGTDVVSGSPLKELVVEGFDEEQIWQQLELQNDAVLGDFQRAIARNVEEEGQDLCLLPEEEEEEEEEDESVAGNSQDQLDLEDETGEEADLSPDHLEEESKRKEKTRR 163          
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1183361095|gb|ORX88418.1| (Mpp10 protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 65.4698 bits (158), Expect = 3.765e-9
Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 0
Query:   52 LKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFV 126
            L  +  + + PE F+    E+A  +T V+K L+D A+  +P+ LGP+ EL  +GFD E IWE++QL+N  +  +V
Sbjct:   14 LSFVKEVVDKPEIFISQNPEVASKVTVVVKNLYDTAKKHEPLPLGPIPELLTEGFDYEQIWEEIQLQNQPLLEYV 88          
The following BLAST results are available for this feature:
BLAST of EWM29332.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111859|gb|EWM29332.1|6.443e-136100.00u3 small nucleolar ribonucleoprotein mpp10 [Nannoc... [more]
gi|1051216166|ref|XP_017691413.1|4.343e-1135.62PREDICTED: U3 small nucleolar ribonucleoprotein pr... [more]
gi|959053251|ref|XP_014729433.1|7.142e-1133.54PREDICTED: U3 small nucleolar ribonucleoprotein pr... [more]
gi|1183422533|gb|ORY46862.1|9.776e-1135.79Mpp10 protein, partial [Rhizoclosmatium globosum][more]
gi|768936223|ref|XP_011608443.1|5.399e-1037.39PREDICTED: U3 small nucleolar ribonucleoprotein pr... [more]
gi|768936221|ref|XP_003969979.2|5.505e-1037.39PREDICTED: U3 small nucleolar ribonucleoprotein pr... [more]
gi|1108923915|ref|XP_010729505.2|9.113e-1033.63PREDICTED: U3 small nucleolar ribonucleoprotein pr... [more]
gi|543354633|ref|XP_005521802.1|1.893e-933.08PREDICTED: U3 small nucleolar ribonucleoprotein pr... [more]
gi|1176276931|ref|XP_020640393.1|1.918e-938.46U3 small nucleolar ribonucleoprotein protein MPP10... [more]
gi|1183361095|gb|ORX88418.1|3.765e-938.67Mpp10 protein [Basidiobolus meristosporus CBS 931.... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1343rna1343Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications