EWM29332.1, cds1341 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|585111859|gb|EWM29332.1| (u3 small nucleolar ribonucleoprotein mpp10 [Nannochloropsis gaditana]) HSP 1 Score: 387.111 bits (993), Expect = 6.443e-136 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query: 1 MPRKKRNQAKRGSDSNDGPEGDVLAKPSHGFNATLSPPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR 195
MPRKKRNQAKRGSDSNDGPEGDVLAKPSHGFNATLSPPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR
Sbjct: 1 MPRKKRNQAKRGSDSNDGPEGDVLAKPSHGFNATLSPPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR 195
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1051216166|ref|XP_017691413.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Lepidothrix coronata]) HSP 1 Score: 71.2478 bits (173), Expect = 4.343e-11 Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 0
Query: 39 GPDLAIPTC--FQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSK-VTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEE 181
GP IP Q L+ A PE F+ LA + K L+D +G + GPL+EL ++ FD E IW+QL+LRN AV F K +TR K + L L ++EE+ +AE + EEE ED+ E E+ +V ++
Sbjct: 4 GPVPGIPGIQGIQTGLRVTGAAAARPERFLSVQEGLAANFRALTKTLYDLNKGNHIVPGGPLKELVIENFDEEQIWQQLELRNSAVLDFFRKSITRDA--KDDNLCLLSDQEEDGSDAEP--SSEEELEDNVMEAEAEQKDVYTKD 145
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|959053251|ref|XP_014729433.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Sturnus vulgaris]) HSP 1 Score: 70.8626 bits (172), Expect = 7.142e-11 Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 0
Query: 38 PGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKRR 195
PG L I TC L+ A PE F+ LA + K L+D +G+ ++ GPL+EL ++ FD E IW+QL+L+N AV F K K E E+L L + EE+ +AE + +EE ED+ E EE V +++++ + +E++ +
Sbjct: 5 PGV-LGIQTC----LRVAGAAAARPECFLSVQDGLAADFRAMTKTLYDLNKGSNIVRGGPLKELVIENFDEEQIWQQLELQNNAVLDFFKKSIAKDAE-DEDLCLLSDREEDGSDAET--SSDEEFEDNVMEAETEEMNVYTKDKDKHKPKAKEKQSK 154
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1183422533|gb|ORY46862.1| (Mpp10 protein, partial [Rhizoclosmatium globosum]) HSP 1 Score: 70.4774 bits (171), Expect = 9.776e-11 Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 0
Query: 58 LTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEK-----GEELVLCEEEE 147
+ + PE F++P L+ L K +FD A+ ++P ++ PL EL DGFD + IWEQ+QLRN + +V+ ++ + G+E V EEE
Sbjct: 97 IISHPEKFLVPDVTLSNTLLDAAKWMFDLAKHSEPFEMSPLAELLTDGFDLDQIWEQMQLRNRPMVKYVTATASDVISRDQQGEGDEDVFDSEEE 191
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|768936223|ref|XP_011608443.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X2 [Takifugu rubripes]) HSP 1 Score: 68.1662 bits (165), Expect = 5.399e-10 Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0
Query: 39 GPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQP--IKLGPLRELAVDGFDAETIWEQLQLRNPAV-RHFVSKVTRKLLEKGEELVLCEEEEEEV 150
GP + T +D LK+++A T P F+ E+A T + K L+D + +P K PL EL V+ FD E IW++L+L+N AV RHF S + L + E L L + +EE+
Sbjct: 8 GP---LVTVLEDCLKKINANTAQPVNFLSLQDEVATDFTSLTKTLYDLHKAEEPGHYKGSPLTELLVENFDEEQIWQELELQNKAVLRHFNSAIEEGLFD--EPLTLLIKHQEEI 117
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|768936221|ref|XP_003969979.2| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Takifugu rubripes]) HSP 1 Score: 68.1662 bits (165), Expect = 5.505e-10 Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0
Query: 39 GPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQP--IKLGPLRELAVDGFDAETIWEQLQLRNPAV-RHFVSKVTRKLLEKGEELVLCEEEEEEV 150
GP + T +D LK+++A T P F+ E+A T + K L+D + +P K PL EL V+ FD E IW++L+L+N AV RHF S + L + E L L + +EE+
Sbjct: 8 GP---LVTVLEDCLKKINANTAQPVNFLSLQDEVATDFTSLTKTLYDLHKAEEPGHYKGSPLTELLVENFDEEQIWQELELQNKAVLRHFNSAIEEGLFD--EPLTLLIKHQEEI 117
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1108923915|ref|XP_010729505.2| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Larimichthys crocea]) HSP 1 Score: 67.3958 bits (163), Expect = 9.113e-10 Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 0
Query: 44 IPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQP--IKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAE 154
+ + ++ +K+++A+T PE F+ +A T + K L+D + QP K PL +L V+ FD E IW++L+L+N AV T K L +L EEE + EE E
Sbjct: 6 VWSVLEECVKKINAITAQPENFLSLQDGVAADFTSLTKTLYDLHKAQQPAGYKGSPLAQLVVENFDEEQIWQELELQNDAVLEHFKNATNKALTDKTLTLLAEEEVSDGEEVE 118
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|543354633|ref|XP_005521802.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Pseudopodoces humilis]) HSP 1 Score: 66.6254 bits (161), Expect = 1.893e-9 Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 0
Query: 37 PPGPDLAIPTCFQDALKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDD 166
P P + Q L+ A PE F+ LA + K L+D +G+ ++ GPL+EL ++ FD E IW+QL+L+N AV F K + E E+L L ++EE+ +AE + ++E ED+
Sbjct: 5 PGAPGVQAIQRIQTCLRVAGAAAARPECFLSVQDGLAADFRAMTKTLYDLNKGSNIVRGGPLKELVIENFDEEQIWQQLELQNNAVLDFFKKSIARDAE-DEDLCLLSDQEEDGSDAET--SSDKELEDN 131
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1176276931|ref|XP_020640393.1| (U3 small nucleolar ribonucleoprotein protein MPP10 [Pogona vitticeps]) HSP 1 Score: 66.6254 bits (161), Expect = 1.918e-9 Identity = 60/156 (38.46%), Postives = 88/156 (56.41%), Query Frame = 0
Query: 43 AIPTCFQDA-LKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDY--ARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVR-HFVSKVTRKLLEKGEELVLCEEEEEEVEEAEHEEAEEEEAEDDGEEERFEEDEVVVEEEEEEEEGKEERKR 194
A P+ DA L L + T+ PE F+ LA + K L+D+ A GT + PL+EL V+GFD E IW+QL+L+N AV F + R + E+G++L L EEEEE EE + A + + D E+E EE ++ + EEE + KE+ +R
Sbjct: 8 AGPSGRLDAWLAVLSSATSRPERFLSIQDGLACDFISLTKTLYDFHKAHGTDVVSGSPLKELVVEGFDEEQIWQQLELQNDAVLGDFQRAIARNVEEEGQDLCLLPEEEEEEEEEDESVAGNSQDQLDLEDETGEEADLSPDHLEEESKRKEKTRR 163
BLAST of EWM29332.1 vs. NCBI_GenBank
Match: gi|1183361095|gb|ORX88418.1| (Mpp10 protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 65.4698 bits (158), Expect = 3.765e-9 Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 0
Query: 52 LKRLHALTNAPETFVMPPSELAEMLTQVLKMLFDYARGTQPIKLGPLRELAVDGFDAETIWEQLQLRNPAVRHFV 126
L + + + PE F+ E+A +T V+K L+D A+ +P+ LGP+ EL +GFD E IWE++QL+N + +V
Sbjct: 14 LSFVKEVVDKPEIFISQNPEVASKVTVVVKNLYDTAKKHEPLPLGPIPELLTEGFDYEQIWEEIQLQNQPLLEYV 88 The following BLAST results are available for this feature:
BLAST of EWM29332.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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