rna1340, rna1340 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1340
Unique Name	rna1340
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	402
Alignment location	CM002457.1:389390..392425 -

Link to JBrowse

Properties


Property Name	Value
Product	indole-3-glycerol phosphate synthase
Orig transcript id	gnl\|cribi\|Naga_100205g4.2985.mrna
Orig protein id	gnl\|cribi\|Naga_100205g4.2985
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:389390..392425 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100205g4	gene1294	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29333.1	cds1338	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1340	rna1340-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:389390..392425-
coding sequence from alignment at CM002457.1:389390..392425-

mRNA sequence

>rna1340 ID=rna1340|Name=rna1340|organism=Nannochloropsis gaditana|type=mRNA|length=402bp
ATGCAGGGCACGGCGACCCCGTCCACGGAAATCCTCCACGGCGGGTGCCA
CTGCGGGCAAGTTCGCTTTTCCTGCGTAGTACCCGTCGATACCTCACTCC
TGAACTGTACTTGCAGTCGATGCGCACAGCTTGGGTTCCTTCATCTTCGA
GTTCCTGCGGCTGCGGATTTCCAGCTCGAATGTATGGCTGAGACAGCACT
GACAGAGTATAGATTCAATACACGCACCGCGGCTCATTTTTTCTGCAAAA
TTTGCGGCGTGCAATCCTTCTACCGTCCTCGCTCCCATCCGGAAGGGATC
AGCGTGAATGCGAGGTGCTTAGACGGAGGAGTGCCTGGACATCGACGCGT
GCAAGAATTCGACGGGAGGGAGTGGGAGGCTCATATTGCGGAGATTAGGT
AA

protein sequence of rna1340

>rna1340-protein ID=rna1340-protein|Name=rna1340|organism=Nannochloropsis gaditana|type=polypeptide|length=1011bp
MKLSAWRANLQHSQHRQSLLFCLIATLTGVLVQAFVPHGNTVTAPIFPGP
PPSPHRPSCRRARPLFMIDNFFRMHEKNRQLNWDDYFGKARYDHPHAFGS
AAQVLTESLSVREAVDESLQQALYQLPACASIDLAIVAVHSSDTSEIDAV
LTHLAQALPGHTRVLGWAGQSLGEAVRPAFEGLGARLVGEDGLPFISVTL
ASIPSVAGRGFYIGEEELRLWKAQGAAEASGQEVPVGGQDQGGTDEENVG
EVSSAAAANSFLGPDKKWEQRVGVTVNEAYKDPPVILLLGSLEDASLAQA
ALQGLDRTYPGTARIGGLSDGVVLFSREGGPGSPQGARIFQEEGNGLLGL
ALLGDIRALTFVNQRVKRVPNTSTYRVESVSEDGKTIMEVSTPGGVRQTP
VEAGLQAVLEGEEARALGLGDVDEEADMSAAESPGGARQGADRWSLVSVR
GSQEPAAMLPAGWVFGSDGSLRLAGRVARKGQFLSIYVQDTGSTHEGEMG
LVGALRREVDDEWGKAELGVTKFRPAGVLLAKDAAYPSQGIGQDFGEALG
DTLAGTPIAGLVMDTAQFAPLVMTRSSALYHESLVVHVLACKAKRRDLRE
IRFRDRGLPGAGASNTKPSPLDMPFDPQRPVMDEATGEVAVNRQAALIGT
DVRVDNMAWNVREESVYPRSLFESMVWTKERELYFVREDAPLMNLMRTVM
MMIKNPDAAVQAKARGLDVTEALKAQTVEGDKWAVLGDISRGTPFHGVLA
PLYDPEQAARATIAGGQAGAVAVRVDQTYYGGKYQHVREVKDALREARVP
VVADDLVLYPYQLYLAKLFGADGVKMGQLSILSDEDLQYQVKICQTLSLT
PIISVASLSQLRRAAALPLNQTSVLTIDDRNWATMGSNSGSKHRAVEWLQ
DPVVQASLQARREGAGAGGAPLILVEGRSNLSDAEKEELKRLGVGGEVFA
FADLPSSVRVEAGREKNGMGSQNGGPSGLGMGGTSMGGGKSIESLKELLR
AQAAASSSTPP

mRNA from alignment at CM002457.1:389390..392425-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1340 ID=rna1340|Name=rna1340|organism=Nannochloropsis gaditana|type=mRNA|length=3036bp|location=Sequence derived from alignment at CM002457.1:389390..392425- (Nannochloropsis gaditana)
ATGAAGCTCTCGGCGTGGCGGGCAAACCTACAACATTCGCAGCACAGGCA
ATCCTTACTCTTCTGCCTGATTGCGACATTGACGGGCGTCCTAGTGCAGG
CGTTTGTTCCCCATGGAAATACCGTCACGGCACCCATTTTTCCAGGACCT
CCTCCCAGTCCTCATCGCCCTAGCTGTAGACGTGCGAGGCCTCTATTTAT
GATCGACAATTTTTTCCGAATGCATGAGAAGAATCGACAATTGAACTGGG
ACGATTACTTTGGCAAGGCACGCTACGATCATCCCCATGCATTCGGCTCC
GCTGCGCAGGTTTTGACTGAGTCACTTTCTGTGCGGGAGGCTGTGGACGA
AAGCCTCCAGCAGGCTCTGTATCAACTCCCAGCGTGCGCTTCCATAGACC
TCGCCATTGTCGCTGTCCACTCGTCAGATACATCCGAGATCGATGCAGTT
CTCACGCACCTGGCGCAGGCCTTACCGGGCCACACGCGTGTACTTGGGTG
GGCCGGTCAATCACTGGGAGAGGCCGTAAGGCCTGCATTCGAGGGTCTTG
GCGCCCGCCTGGTCGGAGAGGATGGCCTGCCCTTCATCAGCGTGACGTTG
GCGTCCATTCCCTCTGTCGCAGGCCGCGGCTTCTACATCGGCGAGGAAGA
GTTGCGTTTGTGGAAAGCGCAGGGTGCGGCGGAGGCGAGCGGCCAGGAGG
TTCCCGTAGGAGGCCAGGACCAGGGCGGCACCGACGAGGAAAATGTAGGA
GAAGTCTCCTCCGCGGCTGCTGCCAACAGTTTTCTGGGCCCAGACAAGAA
GTGGGAGCAACGTGTGGGGGTGACGGTGAACGAGGCGTATAAAGACCCGC
CGGTCATTTTGCTCCTCGGGAGCCTGGAGGACGCCTCCCTCGCCCAAGCT
GCCTTGCAAGGCCTGGACCGGACCTACCCCGGCACCGCCCGCATTGGTGG
ATTGTCCGACGGCGTTGTCTTGTTCAGTCGCGAAGGCGGGCCCGGGTCCC
CTCAGGGCGCACGGATCTTCCAAGAAGAAGGGAACGGGCTGTTGGGCCTG
GCCCTGCTCGGTGACATCCGCGCCTTAACCTTCGTCAATCAAAGGGTAAA
GCGCGTGCCCAACACATCCACGTACCGGGTCGAGTCTGTGAGCGAAGACG
GGAAGACGATCATGGAAGTGTCGACTCCCGGAGGCGTCCGGCAGACTCCT
GTGGAAGCGGGTTTGCAGGCGGTGCTGGAAGGGGAAGAGGCCAGGGCGTT
GGGTCTGGGCGATGTGGACGAGGAGGCGGACATGTCGGCAGCTGAGAGTC
CGGGCGGCGCTCGACAGGGTGCAGACCGCTGGAGTTTGGTGAGTGTGCGT
GGCAGTCAGGAGCCAGCGGCCATGCTGCCGGCGGGATGGGTATTTGGCAG
CGATGGTAGCTTGAGGCTGGCAGGTCGCGTCGCCCGGAAAGGACAATTCT
TGAGCATCTATGTGCAAGACACGGGCAGCACGCATGAAGGAGAGATGGGC
CTGGTGGGGGCGTTGCGGAGAGAGGTGGACGACGAATGGGGCAAGGCGGA
GTTGGGCGTGACGAAATTCCGGCCCGCGGGTGTGCTCCTCGCCAAAGACG
CGGCCTACCCCAGCCAGGGGATCGGCCAGGACTTCGGAGAGGCGCTTGGT
GATACCCTGGCGGGTACTCCCATAGCCGGACTTGTCATGGATACGGCCCA
ATTCGCCCCTCTGGTGATGACGAGAAGCTCGGCGCTTTACCATGAGTCTT
TGGTGGTGCATGTGTTGGCTTGCAAGGCCAAGCGCCGGGACCTGCGGGAG
ATCCGCTTTCGCGACCGGGGTCTCCCTGGCGCAGGAGCCTCGAACACGAA
GCCCAGTCCGTTGGACATGCCCTTTGACCCGCAGCGACCGGTGATGGATG
AGGCGACGGGAGAGGTGGCCGTAAACCGACAGGCGGCCCTGATTGGGACC
GACGTCCGCGTCGACAACATGGCTTGGAACGTGAGGGAGGAAAGCGTCTA
CCCCCGAAGCTTGTTCGAAAGTATGGTGTGGACCAAGGAGCGGGAGCTTT
ACTTCGTCCGGGAGGACGCCCCTCTCATGAACTTGATGCGGACCGTGATG
ATGATGATCAAGAACCCAGACGCCGCCGTGCAGGCCAAGGCGCGGGGGTT
GGACGTGACCGAGGCCCTCAAAGCACAAACGGTGGAGGGAGACAAGTGGG
CGGTCCTGGGGGACATCTCGCGGGGCACGCCTTTCCATGGAGTCCTGGCT
CCCTTGTACGACCCAGAGCAAGCGGCGCGGGCCACCATTGCAGGAGGCCA
AGCGGGGGCCGTGGCCGTCCGGGTGGATCAGACCTATTACGGAGGGAAGT
ACCAGCACGTGCGAGAGGTAAAAGATGCCCTTCGAGAGGCCCGGGTGCCT
GTCGTGGCGGATGATTTAGTCCTATATCCGTACCAACTCTATCTGGCCAA
GCTGTTTGGGGCGGACGGGGTCAAAATGGGCCAACTAAGCATCCTTTCGG
ACGAGGACTTGCAGTACCAGGTCAAAATATGTCAGACCCTAAGCCTTACC
CCCATCATCTCCGTCGCCTCCCTCTCCCAGCTCCGTCGTGCGGCGGCGCT
GCCCCTGAATCAAACGTCGGTCCTAACGATTGATGACCGCAACTGGGCCA
CCATGGGCAGCAACTCAGGATCGAAGCATCGGGCGGTAGAATGGCTTCAA
GACCCCGTCGTGCAGGCAAGTTTACAAGCGCGGCGGGAGGGGGCAGGGGC
TGGCGGTGCACCCTTGATCCTCGTGGAAGGTCGAAGCAATCTGAGCGATG
CGGAAAAGGAGGAGCTGAAAAGGCTGGGCGTGGGTGGCGAGGTATTCGCC
TTCGCAGACCTACCGAGCAGCGTTCGAGTCGAGGCAGGCAGGGAAAAAAA
TGGAATGGGGAGTCAAAATGGAGGCCCTTCTGGCCTGGGGATGGGTGGAA
CAAGCATGGGGGGGGGCAAAAGCATAGAGAGCCTGAAGGAGCTTCTTCGC
GCACAGGCTGCAGCGTCATCGTCGACGCCTCCATAG

Coding sequence (CDS) from alignment at CM002457.1:389390..392425-

>rna1340 ID=rna1340|Name=rna1340|organism=Nannochloropsis gaditana|type=CDS|length=3036bp|location=Sequence derived from alignment at CM002457.1:389390..392425- (Nannochloropsis gaditana)
ATGAAGCTCTCGGCGTGGCGGGCAAACCTACAACATTCGCAGCACAGGCA
ATCCTTACTCTTCTGCCTGATTGCGACATTGACGGGCGTCCTAGTGCAGG
CGTTTGTTCCCCATGGAAATACCGTCACGGCACCCATTTTTCCAGGACCT
CCTCCCAGTCCTCATCGCCCTAGCTGTAGACGTGCGAGGCCTCTATTTAT
GATCGACAATTTTTTCCGAATGCATGAGAAGAATCGACAATTGAACTGGG
ACGATTACTTTGGCAAGGCACGCTACGATCATCCCCATGCATTCGGCTCC
GCTGCGCAGGTTTTGACTGAGTCACTTTCTGTGCGGGAGGCTGTGGACGA
AAGCCTCCAGCAGGCTCTGTATCAACTCCCAGCGTGCGCTTCCATAGACC
TCGCCATTGTCGCTGTCCACTCGTCAGATACATCCGAGATCGATGCAGTT
CTCACGCACCTGGCGCAGGCCTTACCGGGCCACACGCGTGTACTTGGGTG
GGCCGGTCAATCACTGGGAGAGGCCGTAAGGCCTGCATTCGAGGGTCTTG
GCGCCCGCCTGGTCGGAGAGGATGGCCTGCCCTTCATCAGCGTGACGTTG
GCGTCCATTCCCTCTGTCGCAGGCCGCGGCTTCTACATCGGCGAGGAAGA
GTTGCGTTTGTGGAAAGCGCAGGGTGCGGCGGAGGCGAGCGGCCAGGAGG
TTCCCGTAGGAGGCCAGGACCAGGGCGGCACCGACGAGGAAAATGTAGGA
GAAGTCTCCTCCGCGGCTGCTGCCAACAGTTTTCTGGGCCCAGACAAGAA
GTGGGAGCAACGTGTGGGGGTGACGGTGAACGAGGCGTATAAAGACCCGC
CGGTCATTTTGCTCCTCGGGAGCCTGGAGGACGCCTCCCTCGCCCAAGCT
GCCTTGCAAGGCCTGGACCGGACCTACCCCGGCACCGCCCGCATTGGTGG
ATTGTCCGACGGCGTTGTCTTGTTCAGTCGCGAAGGCGGGCCCGGGTCCC
CTCAGGGCGCACGGATCTTCCAAGAAGAAGGGAACGGGCTGTTGGGCCTG
GCCCTGCTCGGTGACATCCGCGCCTTAACCTTCGTCAATCAAAGGGTAAA
GCGCGTGCCCAACACATCCACGTACCGGGTCGAGTCTGTGAGCGAAGACG
GGAAGACGATCATGGAAGTGTCGACTCCCGGAGGCGTCCGGCAGACTCCT
GTGGAAGCGGGTTTGCAGGCGGTGCTGGAAGGGGAAGAGGCCAGGGCGTT
GGGTCTGGGCGATGTGGACGAGGAGGCGGACATGTCGGCAGCTGAGAGTC
CGGGCGGCGCTCGACAGGGTGCAGACCGCTGGAGTTTGGTGAGTGTGCGT
GGCAGTCAGGAGCCAGCGGCCATGCTGCCGGCGGGATGGGTATTTGGCAG
CGATGGTAGCTTGAGGCTGGCAGGTCGCGTCGCCCGGAAAGGACAATTCT
TGAGCATCTATGTGCAAGACACGGGCAGCACGCATGAAGGAGAGATGGGC
CTGGTGGGGGCGTTGCGGAGAGAGGTGGACGACGAATGGGGCAAGGCGGA
GTTGGGCGTGACGAAATTCCGGCCCGCGGGTGTGCTCCTCGCCAAAGACG
CGGCCTACCCCAGCCAGGGGATCGGCCAGGACTTCGGAGAGGCGCTTGGT
GATACCCTGGCGGGTACTCCCATAGCCGGACTTGTCATGGATACGGCCCA
ATTCGCCCCTCTGGTGATGACGAGAAGCTCGGCGCTTTACCATGAGTCTT
TGGTGGTGCATGTGTTGGCTTGCAAGGCCAAGCGCCGGGACCTGCGGGAG
ATCCGCTTTCGCGACCGGGGTCTCCCTGGCGCAGGAGCCTCGAACACGAA
GCCCAGTCCGTTGGACATGCCCTTTGACCCGCAGCGACCGGTGATGGATG
AGGCGACGGGAGAGGTGGCCGTAAACCGACAGGCGGCCCTGATTGGGACC
GACGTCCGCGTCGACAACATGGCTTGGAACGTGAGGGAGGAAAGCGTCTA
CCCCCGAAGCTTGTTCGAAAGTATGGTGTGGACCAAGGAGCGGGAGCTTT
ACTTCGTCCGGGAGGACGCCCCTCTCATGAACTTGATGCGGACCGTGATG
ATGATGATCAAGAACCCAGACGCCGCCGTGCAGGCCAAGGCGCGGGGGTT
GGACGTGACCGAGGCCCTCAAAGCACAAACGGTGGAGGGAGACAAGTGGG
CGGTCCTGGGGGACATCTCGCGGGGCACGCCTTTCCATGGAGTCCTGGCT
CCCTTGTACGACCCAGAGCAAGCGGCGCGGGCCACCATTGCAGGAGGCCA
AGCGGGGGCCGTGGCCGTCCGGGTGGATCAGACCTATTACGGAGGGAAGT
ACCAGCACGTGCGAGAGGTAAAAGATGCCCTTCGAGAGGCCCGGGTGCCT
GTCGTGGCGGATGATTTAGTCCTATATCCGTACCAACTCTATCTGGCCAA
GCTGTTTGGGGCGGACGGGGTCAAAATGGGCCAACTAAGCATCCTTTCGG
ACGAGGACTTGCAGTACCAGGTCAAAATATGTCAGACCCTAAGCCTTACC
CCCATCATCTCCGTCGCCTCCCTCTCCCAGCTCCGTCGTGCGGCGGCGCT
GCCCCTGAATCAAACGTCGGTCCTAACGATTGATGACCGCAACTGGGCCA
CCATGGGCAGCAACTCAGGATCGAAGCATCGGGCGGTAGAATGGCTTCAA
GACCCCGTCGTGCAGGCAAGTTTACAAGCGCGGCGGGAGGGGGCAGGGGC
TGGCGGTGCACCCTTGATCCTCGTGGAAGGTCGAAGCAATCTGAGCGATG
CGGAAAAGGAGGAGCTGAAAAGGCTGGGCGTGGGTGGCGAGGTATTCGCC
TTCGCAGACCTACCGAGCAGCGTTCGAGTCGAGGCAGGCAGGGAAAAAAA
TGGAATGGGGAGTCAAAATGGAGGCCCTTCTGGCCTGGGGATGGGTGGAA
CAAGCATGGGGGGGGGCAAAAGCATAGAGAGCCTGAAGGAGCTTCTTCGC
GCACAGGCTGCAGCGTCATCGTCGACGCCTCCATAG

Synonyms

Publications